Rh5AG124900

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000147
Physical Location & Seq
Forward (+)
11743641 .. 11743964
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG124900.1

Sequence Viewer

Length: 324 bp
ATGGGGTGGCTCTCCTCACCCTACCTGGCGTTCAACTTTATTTGTTATCAACATCTGCAAGACCTTAACTATCAGGGACCTCCTTCTACTTGGTTTTGTTATCAACATGGTCGATTACTAATGAAGGAGAGGCTTGACAGATGTCTGGGCAATTCAGAGTGGAACTTAGTTTTTCCCAAGTCTCAAGTTTTTCATCTTCACCGGATTGGGTCTGATCATAGACCTATATCACTGGATTCTCATCCTTCAGAGCTGCATTCTCCTCGTCCTTTTCGATTTGAACAGATGTGGGTTACTAAGACTGGATGTGCTAATGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

107

Amino Acids

12.65

Weight (kDa)

8.44

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 231
AgsI TTSAA 2 cut(s) 34, 281
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 186
ApeKI GCWGC 1 cut(s) 253
AspS9I GGNCC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 9, 191
AvaII GGWCC 1 cut(s) 77
BbvI GCAGC 1 cut(s) 240
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 26
BclI TGATCA 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 186
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 77
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 26
BoxI GACNNNNGTC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 240
BsaWI WCCGGW 1 cut(s) 201
Bse1I ACTGG 2 cut(s) 237, 307
Bse8I GATNNNNATC 1 cut(s) 240
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 241, 311
BseJI GATNNNNATC 1 cut(s) 240
BseNI ACTGG 2 cut(s) 237, 307
BseRI GAGGAG 2 cut(s) 4, 252
BseXI GCAGC 1 cut(s) 240
BsiSI CCGG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 1 cut(s) 186
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 256
Bsp143I GATC 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 78
BsrI ACTGG 2 cut(s) 237, 307
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 166, 297
BstF5I GGATG 2 cut(s) 241, 311
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 186
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 26
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 240
BtsCI GGATG 2 cut(s) 241, 311
BtsIMutI CAGTG 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 77
CviAII CATG 1 cut(s) 107
CviJI RGCY 3 cut(s) 10, 133, 253
CviKI_1 RGCY 3 cut(s) 10, 133, 253
DdeI CTNAG 2 cut(s) 166, 297
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 231
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 108, 219, 227
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 2 cut(s) 228, 318
Fsp4HI GCNGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 254
HapII CCGG 1 cut(s) 202
Hin1II CATG 1 cut(s) 110
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 202
HphI GGTGA 2 cut(s) 9, 191
Hpy188I TCNGA 3 cut(s) 157, 214, 250
HpyAV CCTTC 3 cut(s) 93, 118, 255
HpyCH4V TGCA 2 cut(s) 58, 256
HpyF3I CTNAG 2 cut(s) 166, 297
Hsp92II CATG 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 11, 38, 59, 131, 215, 218, 288
Lsp1109I GCAGC 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 1 cut(s) 188
MluCI AATT 1 cut(s) 151
MnlI CCTC 4 cut(s) 25, 90, 123, 273
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 1 cut(s) 26
NdeII GATC 1 cut(s) 214
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 271
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 77
PshAI GACNNNNGTC 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 77
PspPPI RGGWCCY 1 cut(s) 77
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 26
SetI ASST 5 cut(s) 27, 66, 82, 226, 255
SinI GGWCC 1 cut(s) 77
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 24
TaqI TCGA 2 cut(s) 112, 274
TasI AATT 1 cut(s) 151
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 2 cut(s) 137, 182
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.