Rorug06G0205300

Histone acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012235
Physical Location & Seq
Forward (+)
32719159 .. 32720327
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0205300.1

Sequence Viewer

Length: 1071 bp
ATGGATCTTGAATTAGGACTCAAGATCACCAAAAATGCAGATGATCATACTTCCTCTTCTGATTTTCGGATTGCGAAGGACAAATCTGGTCCTGTTTTCATATCCACCGAAACAGAAAGCGCGTACATCCTCACTGCCCATCTTAAAGGTCATAGAAAAGAGCATGTTGATATTGACATAAATGAAGACGAGACTCAGCTAGGCATTGCTGTGGAGAAGCCAGTTCAAGAGAAGGTGATGTCAGGATGGTCAATGAACAAGAAAGAAGGGGAGACAAGGGGATTCAGAAAAGTCTTTCGGATCCCAGATGGAGTGGTTTTGAGTCGAATCAAGGCCAAGATTAATGAACAAGACTCGACTCTCAGAATCTTCATGCCAAAAGTGGTGAAAGGATTTGTTGGTGCTGGGGTTGAGGAACTGAAAGAAGAAGAGGTGATCATAGGGAAACCACAGATGACAGAAGCTGCAAGTGATGAGGTTCCTGAAAAAATCAGTGAGAAAATGAAAATGGATAAGAACCCTCAGGCTAAAGGAAAAGAGGTAGATAAAGAAGAGTACACGAAAGAAGTTGTATTAGATGATCAAGATTTGCAGACCAATGATCGAAGAGAAACTAAAGGTGGAGGGATGGCGTCAGAAGAAAGTGAAGAACGAAAGAATATTGCAAAGACTAAACAAGCTGATAGAATTGAGAAAGAGAGAGAGGATGCTAAAAAAAGAATCAAGGAAAAAACACATGGAGGAGTCAAGAATGATAAGAGCACTGAAGCAATAACTCATCAAGTTGCTAAACCATCACAAGAAATTGAAGAAATCGAACCAGAATCGAGACCCCCCAACGCGAACGAAATGCCAAAAGCAACGCCAGAGAAGAAGGAAGTACTTGACAAGGGTGAATCTTCTGAAATGCGGAAAGGAAAAGATGTGCGTGAGAAATCAACTCCAGAGAAGAAGCCTGCTGCGTCAGAAAAGTCCAAGTTGCTGTCCACTCCTTTGATCATTGCAGGTTCAGCCCTTCTCGTCACTATTGTACTGCTAGCAATTCACAGGATTAGGAAAAGAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000123 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009987 GO:0010015 GO:0010321 GO:0010468 GO:0010484 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031248 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0061733 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1902493 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990234 GO:2000026 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04330 ko04919 ko05166 ko05203 map04330 map04919 map05166 map05203
Pfam Domains
Protein Families
Acetyltransf_1 Bromodomain

Protein Analysis

356

Amino Acids

39.97

Weight (kDa)

7.1

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012235)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54610
fragaria_vesca FvH4_2g22590 FvH4_2g22590 FvH4_2g22590 FvH4_2g22590 FvH4_2g22590
malus_domestica MD10G1193500.v1.1
prunus_persica Prupe.8G232900_v2.0.a1
pyrus_communis pycom10g16730
rosa_chinensis RchiOBHm_Chr6g0289651
rosa_laevigata RLG00000012285
rosa_multiflora Rmu_sc0005376.1_g000013
rosa_roxburghii Rroxscaffold_7G00177770
rosa_rugosa Rorug06G0205300 Rorug06G0205400
rosa_samantha Rh6BG323600 Rh6CG330200 Rh6DG315400
rosa_wichuraiana Rw6G027340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 995
AccII CGCG 2 cut(s) 122, 842
AciI CCGC 1 cut(s) 910
AclWI GGATC 3 cut(s) 12, 295, 308
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 1 cut(s) 632
AfaI GTAC 4 cut(s) 125, 557, 882, 1032
AgsI TTSAA 3 cut(s) 11, 227, 809
AluBI AGCT 3 cut(s) 199, 464, 680
AluI AGCT 3 cut(s) 199, 464, 680
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 3 cut(s) 185, 266, 823
AlwI GGATC 3 cut(s) 12, 295, 308
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 464, 959
AseI ATTAAT 1 cut(s) 342
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 1 cut(s) 89
AsuHPI GGTGA 5 cut(s) 19, 247, 397, 445, 905
AsuNHI GCTAGC 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 89
AxyI CCTNAGG 1 cut(s) 522
BamHI GGATCC 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 764
BbvI GCAGC 2 cut(s) 451, 946
BccI CCATC 5 cut(s) 147, 240, 302, 622, 802
BcgI CGANNNNNNTGC 2 cut(s) 832, 866
BclI TGATCA 4 cut(s) 43, 435, 580, 996
BcoDI GTCTC 3 cut(s) 185, 266, 823
BfaI CTAG 2 cut(s) 200, 1037
BfuAI ACCTGC 1 cut(s) 995
BisI GCNGC 2 cut(s) 465, 960
BlsI GCNGC 2 cut(s) 466, 961
BmcAI AGTACT 1 cut(s) 882
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 302, 480
BmsI GCATC 1 cut(s) 697
BmtI GCTAGC 1 cut(s) 1040
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 5
BsaHI GRCGYC 1 cut(s) 632
BsaI GGTCTC 1 cut(s) 823
Bse1I ACTGG 1 cut(s) 221
Bse21I CCTNAGG 1 cut(s) 522
Bse3DI GCAATG 2 cut(s) 204, 999
BseGI GGATG 4 cut(s) 126, 251, 633, 712
BseMI GCAATG 2 cut(s) 204, 999
BseMII CTCAG 3 cut(s) 209, 376, 536
BseNI ACTGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 756
BseXI GCAGC 2 cut(s) 451, 946
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 2 cut(s) 122, 842
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 764
BsmAI GTCTC 3 cut(s) 185, 266, 823
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 764
Bsp143I GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
BspACI CCGC 1 cut(s) 910
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 208, 375, 535
BspFNI CGCG 2 cut(s) 122, 842
BspLI GGNNCC 2 cut(s) 302, 480
BspMI ACCTGC 1 cut(s) 995
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 3 cut(s) 12, 295, 308
BspTNI GGTCTC 1 cut(s) 823
BsrDI GCAATG 2 cut(s) 204, 999
BsrI ACTGG 1 cut(s) 221
BssMI GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
BssNI GRCGYC 1 cut(s) 632
Bst6I CTCTTC 4 cut(s) 61, 423, 546, 601
BstACI GRCGYC 1 cut(s) 632
BstC8I GCNNGC 2 cut(s) 957, 1038
BstDEI CTNAG 3 cut(s) 195, 362, 522
BstF5I GGATG 4 cut(s) 126, 251, 633, 712
BstFNI CGCG 2 cut(s) 122, 842
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 8 cut(s) 7, 27, 46, 303, 438, 583, 604, 999
BstMAI GTCTC 3 cut(s) 185, 266, 823
BstMBI GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
BstMWI GCNNNNNNNGC 1 cut(s) 1010
BstNSI RCATGY 1 cut(s) 167
BstUI CGCG 2 cut(s) 122, 842
BstV1I GCAGC 2 cut(s) 451, 946
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 2 cut(s) 4, 300
BstYI RGATCY 2 cut(s) 4, 300
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 4 cut(s) 126, 251, 633, 712
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 3 cut(s) 132, 499, 762
BveI ACCTGC 1 cut(s) 995
Cac8I GCNNGC 2 cut(s) 957, 1038
CaiI CAGNNNCTG 1 cut(s) 464
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 2 cut(s) 621, 951
Csp6I GTAC 4 cut(s) 124, 556, 881, 1031
CviAII CATG 3 cut(s) 164, 373, 737
CviJI RGCY 8 cut(s) 199, 220, 335, 464, 527, 680, 955, 1013
CviKI_1 RGCY 8 cut(s) 199, 220, 335, 464, 527, 680, 955, 1013
CviQI GTAC 4 cut(s) 124, 556, 881, 1031
DdeI CTNAG 3 cut(s) 195, 362, 522
DpnI GATC 8 cut(s) 6, 26, 45, 302, 437, 582, 603, 998
DpnII GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
Eam1104I CTCTTC 4 cut(s) 61, 423, 546, 601
EarI CTCTTC 4 cut(s) 61, 423, 546, 601
Eco31I GGTCTC 1 cut(s) 823
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 522
FaeI CATG 3 cut(s) 167, 376, 740
FaiI YATR 8 cut(s) 48, 101, 153, 165, 179, 374, 440, 738
FatI CATG 3 cut(s) 163, 372, 736
FbaI TGATCA 4 cut(s) 43, 435, 580, 996
Fnu4HI GCNGC 2 cut(s) 465, 960
FokI GGATG 4 cut(s) 113, 258, 640, 719
Fsp4HI GCNGC 2 cut(s) 465, 960
FspBI CTAG 2 cut(s) 200, 1037
GlaI GCGC 1 cut(s) 121
GluI GCNGC 2 cut(s) 465, 960
GsaI CCCAGC 1 cut(s) 408
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 2 cut(s) 621, 951
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 632
Hin1II CATG 3 cut(s) 167, 376, 740
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HphI GGTGA 5 cut(s) 19, 247, 397, 445, 905
Hpy166II GTNNAC 2 cut(s) 558, 987
Hpy188I TCNGA 8 cut(s) 61, 69, 287, 300, 365, 637, 904, 967
Hpy188III TCNNGA 9 cut(s) 8, 22, 227, 243, 482, 584, 748, 828, 944
Hpy8I GTNNAC 2 cut(s) 558, 987
HpyAV CCTTC 5 cut(s) 70, 226, 260, 868, 1025
HpyCH4V TGCA 5 cut(s) 38, 467, 592, 665, 1004
HpyF10VI GCNNNNNNNGC 1 cut(s) 1010
HpyF3I CTNAG 3 cut(s) 195, 362, 522
Hsp92I GRCGYC 1 cut(s) 632
Hsp92II CATG 3 cut(s) 167, 376, 740
HspAI GCGC 1 cut(s) 120
Ksp22I TGATCA 4 cut(s) 43, 435, 580, 996
Kzo9I GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
Lsp1109I GCAGC 2 cut(s) 451, 946
LweI GCATC 1 cut(s) 697
MaeI CTAG 2 cut(s) 200, 1037
MaeIII GTNAC 1 cut(s) 1021
MalI GATC 8 cut(s) 6, 26, 45, 302, 437, 582, 603, 998
MboI GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
MflI RGATCY 2 cut(s) 4, 300
MhlI GDGCHC 1 cut(s) 764
MluCI AATT 4 cut(s) 11, 687, 804, 1041
MlyI GAGTC 6 cut(s) 12, 187, 331, 347, 352, 753
MseI TTAA 2 cut(s) 144, 342
MslI CAYNNNNRTG 1 cut(s) 209
MvnI CGCG 2 cut(s) 122, 842
MwoI GCNNNNNNNGC 1 cut(s) 1010
NdeII GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
NheI GCTAGC 1 cut(s) 1036
NlaIII CATG 3 cut(s) 167, 376, 740
NlaIV GGNNCC 2 cut(s) 302, 480
NmuCI GTSAC 1 cut(s) 1021
NspI RCATGY 1 cut(s) 167
PfeI GAWTC 6 cut(s) 282, 327, 366, 720, 824, 896
PkrI GCNGC 2 cut(s) 466, 961
PleI GAGTC 6 cut(s) 12, 187, 330, 347, 352, 752
PpsI GAGTC 6 cut(s) 12, 187, 330, 347, 352, 752
PshBI ATTAAT 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 302, 480
PspPI GGNCC 1 cut(s) 89
PstNI CAGNNNCTG 1 cut(s) 464
PsuI RGATCY 2 cut(s) 4, 300
RsaI GTAC 4 cut(s) 125, 557, 882, 1032
RsaNI GTAC 4 cut(s) 124, 556, 881, 1031
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 2 cut(s) 144, 342
SatI GCNGC 2 cut(s) 465, 960
Sau3AI GATC 8 cut(s) 4, 24, 43, 300, 435, 580, 601, 996
Sau96I GGNCC 1 cut(s) 89
ScaI AGTACT 1 cut(s) 882
SchI GAGTC 6 cut(s) 12, 187, 331, 347, 352, 753
SduI GDGCHC 1 cut(s) 764
SfaNI GCATC 1 cut(s) 697
SinI GGWCC 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 4 cut(s) 11, 687, 804, 1041
SsiI CCGC 1 cut(s) 910
SspI AATATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 200, 1037
TaqI TCGA 5 cut(s) 325, 356, 604, 816, 827
TasI AATT 4 cut(s) 11, 687, 804, 1041
TatI WGTACW 3 cut(s) 555, 880, 1030
TfiI GAWTC 6 cut(s) 282, 327, 366, 720, 824, 896
Tru1I TTAA 2 cut(s) 144, 342
Tru9I TTAA 2 cut(s) 144, 342
TscAI CASTG 3 cut(s) 139, 499, 769
TseFI GTSAC 1 cut(s) 1021
TseI GCWGC 2 cut(s) 464, 959
Tsp45I GTSAC 1 cut(s) 1021
TspDTI ATGAA 6 cut(s) 88, 198, 269, 360, 361, 518
TspRI CASTG 3 cut(s) 139, 499, 769
VpaK11BI GGWCC 1 cut(s) 89
VspI ATTAAT 1 cut(s) 342
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 200, 1037
ZrmI AGTACT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.