Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0011341

Physical Location & Seq

Genomic Coordinates Reverse (-)

47777741 .. 47781239

Gene Structure 3499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0325900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGCAGACAAGCCAAGCCGAGCTCTGGTTCTGTACGGAGATGGGTTGGCGCGTTTCGTCAATCCATCACACACCCATCTCCATTCTCTGGCTTCCAAAGCTTCCTGTAGCTTCTTGAGCCTCCCCAATGCTCCTCCCTCAGTCCTTTCCAGCATTGGGATTTACTTGGATTTAGTTGCAGAAAGCGAGGATGGGAGAATAGTTAGAGAGTTTGCAGTACTGGTGGATGCATATGAAGCCTACACTAATACAAGTGGAAGTACCACCAAAGAAGAAGGTGGGGAGAAAGCCACCATTTCCGAAAGATTCATGGGGATGAAAGCTGCTATAGTTACAAACAATTCAAATTTGAAGTCTTTTGGTACCAAACTTGGTTTCAGCGTGTTGCCAAATGATGGTTTTATCAAAAGCAGTGAGGCCCAAGCTGACCTGCCAGTTGATACTGTGGCATCTGAATTGCTGAAGTTGCTTGGATTTCAAGAAGGAAAGACACTGGAGTCGAGCCGGTATGATTTAGTGTTTGTGCATGTTGGGGCTGGTGAGGTGAATGTTAAGAATGACAAGGCTATTGCAGATGATGTGGAATATCCCAATGCTTTGATTGGTGCTATAATTAATATAGGCAAACCTGGAACTGAAATCAGTCTCCGTTTGCACTTGTCTGTTGTAATGAGCTATGGGGGTACCTCAGAGAAAGATGATCCCGACTTGTCGTTTTCAATCAGTAAAGATAAATCCAATCTTTCAAAGCTCATTCCTCACCAAAGTTATACCATGAAAGGAGAGGTTCCGCAGAAGGATGTCAGGCACCATTCCCCAATGTTACTGGCTCAGTGGCAATATGCTGTGACCAGGAAGGACATGGCAGAGACATTCTCTTTTAAAGATTTCAAGGAGCTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005886 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0016020 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032991 GO:0044183 GO:0044424 GO:0044425 GO:0044444 GO:0044445 GO:0044459 GO:0044464 GO:0046658 GO:0051082 GO:0061077 GO:0071944 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

301

Amino Acids

32.77

Weight (kDa)

5.65

Isoelectric Point (pI)

25.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20890
fragaria_vesca	FvH4_2g37790 FvH4_2g37790 FvH4_2g37790
malus_domestica	MD08G1005100.v1.1 MD15G1004500.v1.1
prunus_persica	Prupe.1G357200_v2.0.a1
pyrus_communis	pycom08g00400 pycom15g00340
rosa_chinensis	RchiOBHm_Chr6g0303921
rosa_laevigata	RLG00000011034
rosa_multiflora	Rmu_sc0004644.1_g000010
rosa_roxburghii	Rroxscaffold_7G00164260
rosa_rugosa	Rorug06G0325900 Rorug06G0326000
rosa_samantha	Rh6AG440200 Rh6BG462800 Rh6CG452500 Rh6DG439500
rosa_wichuraiana	Rw6G038120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	496
Acc36I	ACCTGC	1 cut(s)	438
Acc65I	GGTACC	2 cut(s)	362, 683
AccB1I	GGYRCC	3 cut(s)	362, 683, 807
AccB7I	CCANNNNNTGG	2 cut(s)	88, 395
AccII	CGCG	1 cut(s)	52
AciI	CCGC	1 cut(s)	791
AclWI	GGATC	1 cut(s)	695
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	482
AfaI	GTAC	5 cut(s)	35, 219, 262, 364, 685
AfiI	CCNNNNNNNGG	4 cut(s)	25, 88, 156, 395
AgsI	TTSAA	6 cut(s)	345, 352, 479, 720, 747, 892
AjnI	CCWGG	2 cut(s)	628, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	8 cut(s)	23, 101, 111, 323, 425, 675, 751, 898
AluI	AGCT	8 cut(s)	23, 101, 111, 323, 425, 675, 751, 898
Alw21I	GWGCWC	2 cut(s)	25, 900
Alw26I	GTCTC	2 cut(s)	650, 863
AlwI	GGATC	1 cut(s)	695
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	346
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AseI	ATTAAT	1 cut(s)	615
Asp718I	GGTACC	2 cut(s)	362, 683
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	418
AsuHPI	GGTGA	3 cut(s)	551, 556, 752
BanI	GGYRCC	3 cut(s)	362, 683, 807
BanII	GRGCYC	2 cut(s)	25, 900
Bbv12I	GWGCWC	2 cut(s)	25, 900
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	5 cut(s)	35, 73, 84, 185, 389
BciT130I	CCWGG	2 cut(s)	630, 853
BcoDI	GTCTC	2 cut(s)	650, 863
BfaI	CTAG	1 cut(s)	904
BfmI	CTRYAG	2 cut(s)	106, 327
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	630, 853
BmgT120I	GGNCC	1 cut(s)	418
BmiI	GGNNCC	4 cut(s)	364, 685, 789, 809
BmrFI	CCNGG	2 cut(s)	630, 853
BmsI	GCATC	2 cut(s)	217, 458
BplI	GAGNNNNNCTC	2 cut(s)	860, 892
BpmI	CTGGAG	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 88, 156, 395
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	4 cut(s)	225, 434, 498, 831
BseBI	CCWGG	2 cut(s)	630, 853
BseGI	GGATG	4 cut(s)	196, 232, 321, 805
BseLI	CCNNNNNNNGG	4 cut(s)	25, 88, 156, 395
BseMII	CTCAG	3 cut(s)	153, 702, 845
BseNI	ACTGG	4 cut(s)	225, 434, 498, 831
BseRI	GAGGAG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	3 cut(s)	362, 683, 807
BsiHKAI	GWGCWC	2 cut(s)	25, 900
BsiSI	CCGG	1 cut(s)	505
BslI	CCNNNNNNNGG	4 cut(s)	25, 88, 156, 395
BsmAI	GTCTC	2 cut(s)	650, 863
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	2 cut(s)	25, 900
Bsp143I	GATC	1 cut(s)	700
BspACI	CCGC	1 cut(s)	791
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	3 cut(s)	152, 701, 844
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	4 cut(s)	364, 685, 789, 809
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	1 cut(s)	695
BspT107I	GGYRCC	3 cut(s)	362, 683, 807
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	4 cut(s)	225, 434, 498, 831
BssAI	RCCGGY	1 cut(s)	504
BssMI	GATC	1 cut(s)	700
Bst2UI	CCWGG	2 cut(s)	630, 853
Bst4CI	ACNGT	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	139, 688, 831
BstF5I	GGATG	4 cut(s)	196, 232, 321, 805
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	703
BstMAI	GTCTC	2 cut(s)	650, 863
BstMBI	GATC	1 cut(s)	700
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 117, 236, 466
BstNI	CCWGG	2 cut(s)	630, 853
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	628, 851
BstSFI	CTRYAG	2 cut(s)	106, 327
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	4 cut(s)	196, 232, 321, 805
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	3 cut(s)	418, 491, 839
BveI	ACCTGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	52
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	418
Csp6I	GTAC	5 cut(s)	34, 218, 261, 363, 684
CviAII	CATG	4 cut(s)	310, 527, 775, 862
CviQI	GTAC	5 cut(s)	34, 218, 261, 363, 684
DdeI	CTNAG	3 cut(s)	139, 688, 831
DpnI	GATC	1 cut(s)	702
DpnII	GATC	1 cut(s)	700
DraI	TTTAAA	1 cut(s)	883
DrdI	GACNNNNNNGTC	1 cut(s)	496
DseDI	GACNNNNNNGTC	1 cut(s)	496
Ecl136II	GAGCTC	2 cut(s)	23, 898
Eco24I	GRGCYC	2 cut(s)	25, 900
Eco53kI	GAGCTC	2 cut(s)	23, 898
Eco57I	CTGAAG	1 cut(s)	482
EcoICRI	GAGCTC	2 cut(s)	23, 898
EcoRII	CCWGG	2 cut(s)	628, 851
EcoT22I	ATGCAT	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	25, 900
FaeI	CATG	4 cut(s)	313, 530, 778, 865
FalI	AAGNNNNNCTT	1 cut(s)	884
FatI	CATG	4 cut(s)	309, 526, 774, 861
FauNDI	CATATG	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	324
FokI	GGATG	4 cut(s)	203, 239, 328, 812
FriOI	GRGCYC	2 cut(s)	25, 900
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	904
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	505
HhaI	GCGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	313, 530, 778, 865
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	99
HinfI	GANTC	2 cut(s)	306, 497
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	3 cut(s)	551, 556, 752
Hpy188I	TCNGA	3 cut(s)	301, 454, 691
Hpy188III	TCNNGA	3 cut(s)	115, 479, 704
HpyAV	CCTTC	4 cut(s)	269, 476, 790, 850
HpyCH4III	ACNGT	1 cut(s)	445
HpyCH4V	TGCA	6 cut(s)	179, 215, 230, 526, 572, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 117, 236, 466
HpyF3I	CTNAG	3 cut(s)	139, 688, 831
Hsp92II	CATG	4 cut(s)	313, 530, 778, 865
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	2 cut(s)	366, 687
Kzo9I	GATC	1 cut(s)	700
LmnI	GCTCC	2 cut(s)	136, 895
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	217, 458
MaeI	CTAG	1 cut(s)	904
MaeIII	GTNAC	3 cut(s)	331, 822, 847
MalI	GATC	1 cut(s)	702
MboI	GATC	1 cut(s)	700
MboII	GAAGA	2 cut(s)	284, 892
MhlI	GDGCHC	2 cut(s)	25, 900
MluCI	AATT	4 cut(s)	340, 346, 455, 612
MlyI	GAGTC	1 cut(s)	506
MnlI	CCTC	9 cut(s)	131, 144, 148, 181, 409, 535, 697, 768, 778
Mph1103I	ATGCAT	1 cut(s)	232
MseI	TTAA	3 cut(s)	552, 615, 882
MslI	CAYNNNNRTG	1 cut(s)	314
MspI	CCGG	1 cut(s)	505
MspR9I	CCNGG	2 cut(s)	630, 853
MvaI	CCWGG	2 cut(s)	630, 853
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	4 cut(s)	98, 117, 236, 466
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	1 cut(s)	700
NlaIII	CATG	4 cut(s)	313, 530, 778, 865
NlaIV	GGNNCC	4 cut(s)	364, 685, 789, 809
NmeAIII	GCCGAG	1 cut(s)	44
NmuCI	GTSAC	1 cut(s)	847
NsiI	ATGCAT	1 cut(s)	232
NspI	RCATGY	1 cut(s)	530
PfeI	GAWTC	1 cut(s)	306
PflMI	CCANNNNNTGG	2 cut(s)	88, 395
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	2 cut(s)	25, 900
Psp6I	CCWGG	2 cut(s)	628, 851
PspGI	CCWGG	2 cut(s)	628, 851
PspN4I	GGNNCC	4 cut(s)	364, 685, 789, 809
PspPI	GGNCC	1 cut(s)	418
RsaI	GTAC	5 cut(s)	35, 219, 262, 364, 685
RsaNI	GTAC	5 cut(s)	34, 218, 261, 363, 684
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	2 cut(s)	25, 900
SaqAI	TTAA	3 cut(s)	552, 615, 882
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	700
Sau96I	GGNCC	1 cut(s)	418
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	630, 853
SduI	GDGCHC	2 cut(s)	25, 900
SfaNI	GCATC	2 cut(s)	217, 458
SfcI	CTRYAG	2 cut(s)	106, 327
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	4 cut(s)	340, 346, 455, 612
SsiI	CCGC	1 cut(s)	791
SspMI	CTAG	1 cut(s)	904
SstI	GAGCTC	2 cut(s)	25, 900
StyD4I	CCNGG	2 cut(s)	628, 851
TaaI	ACNGT	1 cut(s)	445
TaqI	TCGA	1 cut(s)	500
TasI	AATT	4 cut(s)	340, 346, 455, 612
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	552, 615, 882
Tru9I	TTAA	3 cut(s)	552, 615, 882
TscAI	CASTG	3 cut(s)	418, 498, 839
TseFI	GTSAC	1 cut(s)	847
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	847
TspDTI	ATGAA	4 cut(s)	249, 298, 332, 791
TspGWI	ACGGA	2 cut(s)	51, 638
TspRI	CASTG	3 cut(s)	418, 498, 839
Van91I	CCANNNNNTGG	2 cut(s)	88, 395
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XspI	CTAG	1 cut(s)	904
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.