Rorug06G0417600

structural constituent of cytoskeleton

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
55694472 .. 55695886
1415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0417600.1

Sequence Viewer

Length: 417 bp
ATGGATATTGTGATACCCATCTTGTTCTTCTCTCACTCCGACTCCGACTCAAATCTTCTCCTACTCGTACCCATCGACTCCGACTCCGACTCCGACTCAGATCTTCTCCTCTGCTCCTATTGCCTTCTCCAATGCTCCTATTTTAAAGGATTAGCTGGAGAAGACGAAGAAGGATCGACAAATAAACGATTGGCTTTTCGTATTTCTGGATCTGATGGTGATGTGCAAGTGAGGAAGAAGCTTTATGTGCCGCAAGTGGAGGACAAGAATAGTCACATGAGAATGCTCAACATCTCTTGTGTTGATGATCTGGTTGTGAATTCGATGGATATTTTAAAAGCGGCTGCGGTGGATGCTGATGGAAATGAATGCGAAGACGGTAGTGTTTCACTTACTTCTTACAAGCCTTATCAGTGA
Functional Annotation

Protein Analysis

138

Amino Acids

15.18

Weight (kDa)

4.23

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018276)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17280
malus_domestica MD06G1226500.v1.1 MD14G1235900.v1.1
prunus_persica Prupe.5G232700_v2.0.a1
pyrus_communis pycom06g20280
rosa_chinensis RchiOBHm_Chr7g0178491
rosa_laevigata RLG00000005442
rosa_multiflora Rmu_sc0010235.1_g000002
rosa_rugosa Rorug06G0417600
rosa_wichuraiana Rw7G001270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 251, 341, 347
AclWI GGATC 2 cut(s) 181, 217
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 69
AluBI AGCT 2 cut(s) 155, 241
AluI AGCT 2 cut(s) 155, 241
AlwI GGATC 2 cut(s) 181, 217
ApeKI GCWGC 1 cut(s) 344
ApoI RAATTY 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 230
BbsI GAAGAC 2 cut(s) 168, 381
BbvI GCAGC 1 cut(s) 331
BccI CCATC 5 cut(s) 26, 80, 209, 319, 353
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 251, 342, 345
BlsI GCNGC 3 cut(s) 252, 343, 346
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 2 cut(s) 168, 381
BpmI CTGGAG 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 17
BsaXI ACNNNNNCTCC 6 cut(s) 26, 56, 68, 74, 98, 104
Bse8I GATNNNNATC 1 cut(s) 17
BseGI GGATG 1 cut(s) 358
BseJI GATNNNNATC 1 cut(s) 17
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 331
BsmI GAATGC 2 cut(s) 288, 374
Bsp143I GATC 4 cut(s) 100, 173, 209, 307
BspACI CCGC 3 cut(s) 251, 341, 347
BspCNI CTCAG 1 cut(s) 110
BspPI GGATC 2 cut(s) 181, 217
BssMI GATC 4 cut(s) 100, 173, 209, 307
Bst4CI ACNGT 1 cut(s) 380
BstDEI CTNAG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 358
BstKTI GATC 4 cut(s) 103, 176, 212, 310
BstMBI GATC 4 cut(s) 100, 173, 209, 307
BstMWI GCNNNNNNNGC 3 cut(s) 120, 247, 353
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 2 cut(s) 168, 381
BstX2I RGATCY 2 cut(s) 100, 209
BstYI RGATCY 2 cut(s) 100, 209
BtsCI GGATG 1 cut(s) 358
Csp6I GTAC 1 cut(s) 68
CviAII CATG 1 cut(s) 277
CviJI RGCY 5 cut(s) 155, 194, 241, 344, 406
CviKI_1 RGCY 5 cut(s) 155, 194, 241, 344, 406
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 97
DpnI GATC 4 cut(s) 102, 175, 211, 309
DpnII GATC 4 cut(s) 100, 173, 209, 307
DraI TTTAAA 2 cut(s) 145, 336
EcoRI GAATTC 1 cut(s) 319
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 246, 278
FatI CATG 1 cut(s) 276
Fnu4HI GCNGC 3 cut(s) 251, 342, 345
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 251, 342, 345
GluI GCNGC 3 cut(s) 251, 342, 345
GsuI CTGGAG 1 cut(s) 177
Hin1II CATG 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 6 cut(s) 41, 47, 77, 83, 89, 95
HphI GGTGA 1 cut(s) 230
Hpy188I TCNGA 7 cut(s) 40, 46, 82, 88, 94, 100, 214
Hpy188III TCNNGA 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 134, 164
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 247, 353
HpyF3I CTNAG 1 cut(s) 97
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 4 cut(s) 100, 173, 209, 307
LmnI GCTCC 2 cut(s) 119, 140
LpnPI CCDG 3 cut(s) 141, 192, 296
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 272
MalI GATC 4 cut(s) 102, 175, 211, 309
MboI GATC 4 cut(s) 100, 173, 209, 307
MboII GAAGA 7 cut(s) 19, 47, 95, 173, 179, 247, 386
MflI RGATCY 2 cut(s) 100, 209
MluCI AATT 1 cut(s) 319
MlyI GAGTC 6 cut(s) 35, 41, 71, 77, 83, 89
MmeI TCCRAC 5 cut(s) 63, 69, 105, 111, 117
MnlI CCTC 3 cut(s) 119, 225, 253
MseI TTAA 2 cut(s) 144, 335
MslI CAYNNNNRTG 1 cut(s) 281
Mva1269I GAATGC 2 cut(s) 288, 374
MwoI GCNNNNNNNGC 3 cut(s) 120, 247, 353
NdeII GATC 4 cut(s) 100, 173, 209, 307
NlaIII CATG 1 cut(s) 280
NmuCI GTSAC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 288, 374
PkrI GCNGC 3 cut(s) 252, 343, 346
PleI GAGTC 6 cut(s) 35, 41, 71, 77, 83, 89
PpsI GAGTC 6 cut(s) 35, 41, 71, 77, 83, 89
PsuI RGATCY 2 cut(s) 100, 209
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 144, 335
SatI GCNGC 3 cut(s) 251, 342, 345
Sau3AI GATC 4 cut(s) 100, 173, 209, 307
SchI GAGTC 6 cut(s) 35, 41, 71, 77, 83, 89
SetI ASST 2 cut(s) 157, 243
SfaNI GCATC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 1 cut(s) 319
SsiI CCGC 3 cut(s) 251, 341, 347
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 3 cut(s) 75, 176, 323
TasI AATT 1 cut(s) 319
TauI GCSGC 2 cut(s) 253, 344
Tru1I TTAA 2 cut(s) 144, 335
Tru9I TTAA 2 cut(s) 144, 335
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 344
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 381
XapI RAATTY 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.