Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007336

Physical Location & Seq

Genomic Coordinates Reverse (-)

57948788 .. 57950101

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0449600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCATGGTTGCCCAACTTTAGGAAATCCAAGGCCTTGCAAGGCTCTGACTCCTCATCTTGTGAGACTTTATGATACCCTTAGAAATGAAGGCAAAGATCTTGAGATTATTTTTGTCTCCTTCGATCGCGATGAGGACAAATTCAATGCGCACTTCAAGTGCATGCCATGGCTGGCAGTCCCATTCGATGTAAACCTGCATAAAAGATTGAGTAACATATACCATGTTGATCGAATCCCATCACTCGTTCCGTTCAGTTCAGATGGGATATCAATTGAGGAAGATTTGATTGGACTTATTGAAGACTATGGTGCTGAGGCATTTCCTTTAACTAGGAAGAGAAGAGAGGAATTAAGGGCAATAGATGATGCAAAGCGTGATGGTGGAAAACTTGAAGAGCTTCTGGCACATCAAGGAAGAAACTATCTCATGTCTAGGGATGATATCAGTATCCGAACTTGTTGGCAAGACCGCAAGACCATAGGCCTTTACTTTGGTGCACACTGGAGTCCTCCTTGCCGTGCTTTCACTTCCAAGCTCATAGAAGCGTACAGTGAGCTTCTGACATCCAACGATGAATTCTTTGAAATCATTTTCGTCTCCACAGATCGAGACCTCAAAGAATTCGAACTAAACATATGCACCATGCCATGGCCTGCCATCCCCTACCGTGATAAAACAAGACAAGACCTTTGCCGAATCTTTAACATTAAAGAGATTCCGGCTTTGGTTTTAATTGGACCGGATGGGAAGGCTGTTAGCACAAAGGGGAGGGCTTTGATCTCTTTGCATGGCGCAAAAGCTTTCCCATTTACAGAGTTGAGGATCAAAGAGGTCGAAGCAGCCTTGGGAAAAGAAGGAGAGGCATTGCCTCCTCAAGCGAAGGATATAAAGCGTGAGCATATGTATGTGATTTTTGCAGGAAGCAAGCGAGGTTCTGGGCATTTTCGTCTGATGTTTGTTACTATGACCTTCATCCAACGTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0043167 GO:0043169 GO:0046872

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 ko04070 ko04072 ko05231 map00561 map00564 map01100 map01110 map04070 map04072 map05231

Pfam Domains

Protein Families

C1_1 DAGK_acc DAGK_cat

Protein Analysis

329

Amino Acids

37.67

Weight (kDa)

7.14

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thioredoxin_8	PF13905	10 - 89	1.3e-15	Thioredoxin-like
Thioredoxin_8	PF13905	159 - 251	8.6e-24	Thioredoxin-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07920 AT5G07920 AT5G07920
fragaria_vesca	FvH4_5g14210 FvH4_5g14210 FvH4_5g14210 FvH4_5g14210 FvH4_5g14210 FvH4_5g14210
malus_domestica	MD14G1209800.v1.1
prunus_persica	Prupe.5G203000_v2.0.a1 Prupe.5G221300_v2.0.a1
pyrus_communis	pycom06g17690 pycom14g17330
rosa_chinensis	RchiOBHm_Chr7g0182721
rosa_laevigata	RLG00000005106
rosa_multiflora	Rmu_sc0000014.1_g000036
rosa_roxburghii	Rroxscaffold_3G00271040
rosa_rugosa	Rorug06G0449500 Rorug06G0449600
rosa_samantha	Rh7AG053300 Rh7BG052900 Rh7CG054500 Rh7DG052700
rosa_wichuraiana	Rw7G004340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	204
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	1 cut(s)	833
AcsI	RAATTY	3 cut(s)	140, 578, 623
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	20, 651
AgsI	TTSAA	5 cut(s)	145, 157, 302, 395, 587
AjuI	GAANNNNNNNTTGG	4 cut(s)	273, 305, 563, 595
AluBI	AGCT	4 cut(s)	400, 538, 559, 803
AluI	AGCT	4 cut(s)	400, 538, 559, 803
Alw21I	GWGCWC	1 cut(s)	502
Alw26I	GTCTC	4 cut(s)	58, 121, 604, 606
Alw44I	GTGCAC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	833
AoxI	GGCC	3 cut(s)	32, 484, 653
ApaLI	GTGCAC	1 cut(s)	498
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	3 cut(s)	140, 578, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	675, 707
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	2 cut(s)	151, 797
AspS9I	GGNCC	1 cut(s)	740
AsuII	TTCGAA	1 cut(s)	627
AvaII	GGWCC	1 cut(s)	740
BaeGI	GKGCMC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	502
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	5 cut(s)	247, 257, 374, 668, 740
BceAI	ACGGC	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	461
BcoDI	GTCTC	4 cut(s)	58, 121, 604, 606
BfaI	CTAG	2 cut(s)	333, 435
BfuAI	ACCTGC	1 cut(s)	204
BfuI	GTATCC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	97
BisI	GCNGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	844
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	740
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	1 cut(s)	309
BpmI	CTGGAG	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	627
BpuEI	CTTGAG	2 cut(s)	122, 861
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	4 cut(s)	29, 167, 650, 846
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 651
Bse1I	ACTGG	1 cut(s)	509
Bse3DI	GCAATG	1 cut(s)	866
BseDI	CCNNGG	4 cut(s)	29, 167, 650, 846
BseGI	GGATG	5 cut(s)	445, 566, 660, 751, 975
BseLI	CCNNNNNNNGG	2 cut(s)	20, 651
BseMI	GCAATG	1 cut(s)	866
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	1 cut(s)	509
BseRI	GAGGAG	2 cut(s)	42, 864
BseSI	GKGCMC	1 cut(s)	502
BseXI	GCAGC	1 cut(s)	854
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	3 cut(s)	34, 486, 655
BsiEI	CGRYCG	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	502
BsiSI	CCGG	2 cut(s)	722, 743
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	20, 651
BsmAI	GTCTC	4 cut(s)	58, 121, 604, 606
BsmBI	CGTCTC	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	34, 486, 655
Bso31I	GGTCTC	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	627
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp143I	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
Bsp19I	CCATGG	2 cut(s)	167, 650
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	3 cut(s)	34, 486, 655
BspCNI	CTCAG	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	833
BspQI	GCTCTTC	1 cut(s)	390
BspT104I	TTCGAA	1 cut(s)	627
BspTNI	GGTCTC	1 cut(s)	606
BsrDI	GCAATG	1 cut(s)	866
BsrI	ACTGG	1 cut(s)	509
BssECI	CCNNGG	4 cut(s)	29, 167, 650, 846
BssMI	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
BssT1I	CCWWGG	4 cut(s)	29, 167, 650, 846
Bst4CI	ACNGT	2 cut(s)	554, 671
Bst6I	CTCTTC	3 cut(s)	332, 337, 390
BstBI	TTCGAA	1 cut(s)	627
BstC8I	GCNNGC	4 cut(s)	164, 174, 657, 929
BstDEI	CTNAG	2 cut(s)	80, 315
BstDSI	CCRYGG	2 cut(s)	167, 650
BstF5I	GGATG	5 cut(s)	445, 566, 660, 751, 975
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	151, 797
BstKTI	GATC	6 cut(s)	100, 127, 232, 610, 783, 828
BstMAI	GTCTC	4 cut(s)	58, 121, 604, 606
BstMBI	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
BstMCI	CGRYCG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	166
BstSLI	GKGCMC	1 cut(s)	502
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	3 cut(s)	34, 486, 655
BtgI	CCRYGG	2 cut(s)	167, 650
BtgZI	GCGATG	1 cut(s)	144
BtsCI	GGATG	5 cut(s)	445, 566, 660, 751, 975
BtsIMutI	CAGTG	2 cut(s)	502, 559
BtuMI	TCGCGA	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	204
Cac8I	GCNNGC	4 cut(s)	164, 174, 657, 929
CfoI	GCGC	2 cut(s)	151, 797
Cfr13I	GGNCC	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	550
CviAII	CATG	8 cut(s)	5, 163, 168, 224, 430, 646, 651, 791
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	80, 315
DpnI	GATC	6 cut(s)	99, 126, 231, 609, 782, 827
DpnII	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
Eam1104I	CTCTTC	3 cut(s)	332, 337, 390
EarI	CTCTTC	3 cut(s)	332, 337, 390
Eco130I	CCWWGG	4 cut(s)	29, 167, 650, 846
Eco147I	AGGCCT	2 cut(s)	34, 486
Eco31I	GGTCTC	1 cut(s)	606
Eco32I	GATATC	2 cut(s)	270, 445
Eco47I	GGWCC	1 cut(s)	740
EcoRI	GAATTC	2 cut(s)	578, 623
EcoRV	GATATC	2 cut(s)	270, 445
EcoT14I	CCWWGG	4 cut(s)	29, 167, 650, 846
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	4 cut(s)	29, 167, 650, 846
Esp3I	CGTCTC	1 cut(s)	604
FaeI	CATG	8 cut(s)	8, 166, 171, 227, 433, 649, 654, 794
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	8 cut(s)	4, 162, 167, 223, 429, 645, 650, 790
FauNDI	CATATG	2 cut(s)	638, 903
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	5 cut(s)	452, 553, 647, 758, 962
Fsp4HI	GCNGC	1 cut(s)	843
FspAI	RTGCGCAY	1 cut(s)	150
FspBI	CTAG	2 cut(s)	333, 435
FspI	TGCGCA	1 cut(s)	150
GlaI	GCGC	2 cut(s)	150, 796
GluI	GCNGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	34, 486, 655
HapII	CCGG	2 cut(s)	722, 743
HhaI	GCGC	2 cut(s)	151, 797
Hin1II	CATG	8 cut(s)	8, 166, 171, 227, 433, 649, 654, 794
Hin6I	GCGC	2 cut(s)	149, 795
HinP1I	GCGC	2 cut(s)	149, 795
HindIII	AAGCTT	1 cut(s)	801
HinfI	GANTC	5 cut(s)	49, 234, 508, 699, 718
HpaII	CCGG	2 cut(s)	722, 743
Hpy166II	GTNNAC	2 cut(s)	193, 500
Hpy188I	TCNGA	5 cut(s)	48, 262, 455, 564, 954
Hpy188III	TCNNGA	3 cut(s)	101, 128, 611
Hpy8I	GTNNAC	2 cut(s)	193, 500
HpyAV	CCTTC	6 cut(s)	83, 130, 745, 851, 877, 982
HpyCH4III	ACNGT	2 cut(s)	554, 671
HpyCH4IV	ACGT	1 cut(s)	982
HpyCH4V	TGCA	9 cut(s)	4, 39, 162, 199, 371, 500, 642, 790, 920
HpyF3I	CTNAG	2 cut(s)	80, 315
HpySE526I	ACGT	1 cut(s)	982
Hsp92II	CATG	8 cut(s)	8, 166, 171, 227, 433, 649, 654, 794
HspAI	GCGC	2 cut(s)	149, 795
Kzo9I	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
LguI	GCTCTTC	1 cut(s)	390
LpnPI	CCDG	9 cut(s)	158, 209, 389, 490, 669, 735, 756, 906, 924
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	333, 435
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	2 cut(s)	212, 961
MalI	GATC	6 cut(s)	99, 126, 231, 609, 782, 827
MboI	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
MboII	GAAGA	6 cut(s)	293, 314, 349, 354, 407, 429
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	6 cut(s)	140, 273, 350, 578, 623, 735
MlyI	GAGTC	2 cut(s)	43, 517
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	5 cut(s)	329, 353, 705, 711, 734
MslI	CAYNNNNRTG	1 cut(s)	906
MspI	CCGG	2 cut(s)	722, 743
MunI	CAATTG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	129
NcoI	CCATGG	2 cut(s)	167, 650
NdeI	CATATG	2 cut(s)	638, 903
NdeII	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
NlaIII	CATG	8 cut(s)	8, 166, 171, 227, 433, 649, 654, 794
NruI	TCGCGA	1 cut(s)	129
NsbI	TGCGCA	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	166
NspV	TTCGAA	1 cut(s)	627
PaeI	GCATGC	1 cut(s)	166
PceI	AGGCCT	2 cut(s)	34, 486
PciSI	GCTCTTC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	234, 699, 718
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	1 cut(s)	844
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	2 cut(s)	43, 516
PpsI	GAGTC	2 cut(s)	43, 516
PspPI	GGNCC	1 cut(s)	740
PsuI	RGATCY	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	127
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	906
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	5 cut(s)	329, 353, 705, 711, 734
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	6 cut(s)	97, 124, 229, 607, 780, 825
Sau96I	GGNCC	1 cut(s)	740
SchI	GAGTC	2 cut(s)	43, 517
SduI	GDGCHC	1 cut(s)	502
SfaNI	GCATC	1 cut(s)	358
SfuI	TTCGAA	1 cut(s)	627
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	906
SmlI	CTYRAG	2 cut(s)	101, 876
SmoI	CTYRAG	2 cut(s)	101, 876
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	6 cut(s)	140, 273, 350, 578, 623, 735
SseBI	AGGCCT	2 cut(s)	34, 486
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	2 cut(s)	333, 435
StuI	AGGCCT	2 cut(s)	34, 486
StyI	CCWWGG	4 cut(s)	29, 167, 650, 846
TaaI	ACNGT	2 cut(s)	554, 671
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	6 cut(s)	123, 186, 232, 610, 627, 837
TasI	AATT	6 cut(s)	140, 273, 350, 578, 623, 735
TfiI	GAWTC	3 cut(s)	234, 699, 718
Tru1I	TTAA	5 cut(s)	329, 353, 705, 711, 734
Tru9I	TTAA	5 cut(s)	329, 353, 705, 711, 734
TscAI	CASTG	2 cut(s)	509, 559
TseI	GCWGC	1 cut(s)	842
TspDTI	ATGAA	3 cut(s)	102, 591, 964
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	509, 559
Van91I	CCANNNNNTGG	1 cut(s)	651
VneI	GTGCAC	1 cut(s)	498
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	3 cut(s)	140, 578, 623
XceI	RCATGY	1 cut(s)	166
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	2 cut(s)	333, 435
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.