Rorug07G0024700
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0007776
Physical Location & Seq
Reverse (-)
1784250 .. 1788112
3863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0024700.1

Sequence Viewer

Length: 921 bp
ATGGGGCAAATATACAACCTGCATCCGGCGGAGGCCGAACACCTGTTTACCTATCTCGAAATCCTCGGGGTGAGGATCCATCTTAACGTTTCTGATCAGGAAAAGGCTATCACTGCTACCGACTCCTTCTTCAAAACATTCATCGTTTGGCGTCAGCCTAGGATAATCGGTTCGATCGCCTTTGCAATCCTGAATGAACTCCTTCAATCTAAGGAGATAAACGAGGAGATTATTGAAAAAGTTATTCAGTTCTACCCGAACGTCCCGGGCGAGGCGGCGGAGGAGAAGAAGAAAAAGGAGGAGGATGAAGACGACAAGTTGACGGCGATGTTAGGGCCGGAGGCCGAGGAGGAGGAGGAGGAGACAGAGGAGATGGAGGATCTTCCAGATCCCGAGTGTGATGATTTAGATTTTCATGTAAAGTACCTGAAGAAGTGGGCCATGGAGAGGGCCCAGCAGAAGGTAAAGGAGTTAGAACCGACAGAACAAGACAGGATGGAGTTGTTGAAACATTGCACGGAAATCGGATGCAGTTTGAAACAAGACCAAGCCCAGAAGATCCTCAATATGATGATTTCTTTCTTAAGCAATTCTGAGTTTTTTACACGATTCTCACCTTACAAAACTGATAGGAGAATCTGCATCAAAAGTTTCATGGAAAAGGTCCGAGCCTATCTCGAGCGTTCTTGCATCCTGAACGACTTGGGGACGGTGTACCGCGCCATTGAGACTGTCAAGTCAATAGAAGGAGAAGAAGATTTGAAAATGGAGCGGCAGCGTGTCAGCAGGATGTTAAAGAAGAATATCGTACCAACGAAAGAAGAAGGGATTGCTACCCCCATGTGCCTCTTAAAACTAGAAGAGAAAAGAGAATATCTGGAACTTGACGAATCCAGAGAAGGAAAATATGTGGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

306

Amino Acids

35.88

Weight (kDa)

4.84

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 736
Acc36I ACCTGC 1 cut(s) 27
AccBSI CCGCTC 1 cut(s) 772
AccII CGCG 1 cut(s) 720
AciI CCGC 5 cut(s) 29, 275, 278, 718, 772
AclI AACGTT 1 cut(s) 87
AclWI GGATC 5 cut(s) 70, 83, 383, 387, 553
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 3 cut(s) 425, 716, 810
AfiI CCNNNNNNNGG 4 cut(s) 25, 271, 447, 460
AflII CTTAAG 1 cut(s) 583
AgsI TTSAA 6 cut(s) 133, 206, 236, 508, 538, 763
AloI GAACNNNNNNTCC 2 cut(s) 154, 186
Alw26I GTCTC 2 cut(s) 356, 722
AlwI GGATC 5 cut(s) 70, 83, 383, 387, 553
Ama87I CYCGRG 4 cut(s) 65, 265, 392, 677
AoxI GGCC 5 cut(s) 33, 335, 342, 438, 450
ApaI GGGCCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 775
Asp700I GAANNNNTTC 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 158
AspLEI GCGC 1 cut(s) 722
AspS9I GGNCC 5 cut(s) 335, 438, 450, 451, 664
AsuC2I CCSGG 2 cut(s) 266, 267
AsuHPI GGTGA 2 cut(s) 82, 606
AvaI CYCGRG 4 cut(s) 65, 265, 392, 677
AvaII GGWCC 1 cut(s) 664
AvrII CCTAGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 454
BamHI GGATCC 1 cut(s) 75
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 787
BccI CCATC 3 cut(s) 87, 367, 490
BceAI ACGGC 1 cut(s) 339
BcgI CGANNNNNNTGC 2 cut(s) 505, 539
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 2 cut(s) 266, 267
BcoDI GTCTC 2 cut(s) 356, 722
BfaI CTAG 2 cut(s) 159, 857
BfrI CTTAAG 1 cut(s) 583
BfuAI ACCTGC 1 cut(s) 27
BisI GCNGC 3 cut(s) 276, 773, 776
BlnI CCTAGG 1 cut(s) 158
BlsI GCNGC 3 cut(s) 277, 774, 777
Bme1390I CCNGG 2 cut(s) 266, 267
Bme18I GGWCC 1 cut(s) 664
BmeT110I CYCGRG 4 cut(s) 65, 265, 392, 677
BmgT120I GGNCC 5 cut(s) 335, 438, 450, 451, 664
BmiI GGNNCC 2 cut(s) 77, 452
BmrFI CCNGG 2 cut(s) 266, 267
BmsI GCATC 4 cut(s) 31, 518, 651, 699
BpiI GAAGAC 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 660, 692
BpuMI CCSGG 2 cut(s) 266, 267
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 5 cut(s) 64, 158, 265, 345, 441
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 271, 447, 460
Bse3DI GCAATG 1 cut(s) 511
BseDI CCNNGG 5 cut(s) 64, 158, 265, 345, 441
BseGI GGATG 6 cut(s) 22, 310, 501, 533, 690, 795
BseLI CCNNNNNNNGG 4 cut(s) 25, 271, 447, 460
BseMI GCAATG 1 cut(s) 511
BseMII CTCAG 1 cut(s) 585
BseRI GAGGAG 9 cut(s) 239, 296, 314, 362, 365, 368, 371, 374, 383
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 1 cut(s) 787
BseYI CCCAGC 1 cut(s) 453
Bsh1236I CGCG 1 cut(s) 720
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 5 cut(s) 35, 337, 344, 440, 452
BsiEI CGRYCG 1 cut(s) 177
BsiHKCI CYCGRG 4 cut(s) 65, 265, 392, 677
BsiSI CCGG 3 cut(s) 26, 266, 338
BslFI GGGAC 2 cut(s) 248, 721
BslI CCNNNNNNNGG 4 cut(s) 25, 271, 447, 460
BsmAI GTCTC 2 cut(s) 356, 722
BsmFI GGGAC 2 cut(s) 248, 721
BsnI GGCC 5 cut(s) 35, 337, 344, 440, 452
BsoBI CYCGRG 4 cut(s) 65, 265, 392, 677
Bsp120I GGGCCC 1 cut(s) 450
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 6 cut(s) 75, 94, 174, 379, 388, 558
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 5 cut(s) 29, 275, 278, 718, 772
BspANI GGCC 5 cut(s) 35, 337, 344, 440, 452
BspCNI CTCAG 1 cut(s) 586
BspFNI CGCG 1 cut(s) 720
BspLI GGNNCC 2 cut(s) 77, 452
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 5 cut(s) 70, 83, 383, 387, 553
BspTI CTTAAG 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 772
BsrDI GCAATG 1 cut(s) 511
BssECI CCNNGG 5 cut(s) 64, 158, 265, 345, 441
BssMI GATC 6 cut(s) 75, 94, 174, 379, 388, 558
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 158, 441
Bst4CI ACNGT 2 cut(s) 712, 733
Bst6I CTCTTC 1 cut(s) 855
BstACI GRCGYC 1 cut(s) 151
BstAFI CTTAAG 1 cut(s) 583
BstDEI CTNAG 2 cut(s) 210, 594
BstDSI CCRYGG 1 cut(s) 441
BstF5I GGATG 6 cut(s) 22, 310, 501, 533, 690, 795
BstFNI CGCG 1 cut(s) 720
BstHHI GCGC 1 cut(s) 722
BstKTI GATC 6 cut(s) 78, 97, 177, 382, 391, 561
BstMAI GTCTC 2 cut(s) 356, 722
BstMBI GATC 6 cut(s) 75, 94, 174, 379, 388, 558
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 264, 265
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 720
BstV1I GCAGC 1 cut(s) 787
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 4 cut(s) 75, 379, 388, 558
BstYI RGATCY 4 cut(s) 75, 379, 388, 558
BsuRI GGCC 5 cut(s) 35, 337, 344, 440, 452
BtgI CCRYGG 1 cut(s) 441
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 6 cut(s) 22, 310, 501, 533, 690, 795
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 722
Cfr13I GGNCC 5 cut(s) 335, 438, 450, 451, 664
Cfr9I CCCGGG 1 cut(s) 265
CseI GACGC 1 cut(s) 140
Csp6I GTAC 3 cut(s) 424, 715, 809
CviAII CATG 4 cut(s) 416, 442, 655, 841
CviJI RGCY 9 cut(s) 35, 107, 157, 337, 344, 440, 452, 551, 671
CviKI_1 RGCY 9 cut(s) 35, 107, 157, 337, 344, 440, 452, 551, 671
CviQI GTAC 3 cut(s) 424, 715, 809
DdeI CTNAG 2 cut(s) 210, 594
DpnI GATC 6 cut(s) 77, 96, 176, 381, 390, 560
DpnII GATC 6 cut(s) 75, 94, 174, 379, 388, 558
DrdI GACNNNNNNGTC 1 cut(s) 736
DseDI GACNNNNNNGTC 1 cut(s) 736
Eam1104I CTCTTC 1 cut(s) 855
EarI CTCTTC 1 cut(s) 855
EciI GGCGGA 2 cut(s) 44, 293
Eco130I CCWWGG 2 cut(s) 158, 441
Eco24I GRGCYC 1 cut(s) 454
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 4 cut(s) 65, 265, 392, 677
EcoO109I RGGNCCY 1 cut(s) 450
EcoT14I CCWWGG 2 cut(s) 158, 441
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 2 cut(s) 158, 441
FaeI CATG 4 cut(s) 419, 445, 658, 844
FaiI YATR 7 cut(s) 13, 417, 443, 569, 656, 842, 909
FaqI GGGAC 2 cut(s) 248, 721
FatI CATG 4 cut(s) 415, 441, 654, 840
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 3 cut(s) 276, 773, 776
FokI GGATG 6 cut(s) 9, 317, 508, 540, 677, 802
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 3 cut(s) 276, 773, 776
FspBI CTAG 2 cut(s) 159, 857
GlaI GCGC 1 cut(s) 721
GluI GCNGC 3 cut(s) 276, 773, 776
GsaI CCCAGC 1 cut(s) 457
HaeIII GGCC 5 cut(s) 35, 337, 344, 440, 452
HapII CCGG 3 cut(s) 26, 266, 338
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 722
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 4 cut(s) 419, 445, 658, 844
Hin6I GCGC 1 cut(s) 720
HinP1I GCGC 1 cut(s) 720
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 4 cut(s) 122, 609, 636, 890
HpaII CCGG 3 cut(s) 26, 266, 338
HphI GGTGA 2 cut(s) 82, 606
Hpy166II GTNNAC 3 cut(s) 48, 321, 715
Hpy188I TCNGA 4 cut(s) 94, 527, 595, 668
Hpy188III TCNNGA 9 cut(s) 56, 98, 190, 386, 392, 677, 694, 878, 894
Hpy8I GTNNAC 3 cut(s) 48, 321, 715
HpyAV CCTTC 6 cut(s) 136, 212, 454, 740, 818, 893
HpyCH4III ACNGT 2 cut(s) 712, 733
HpyCH4IV ACGT 2 cut(s) 87, 261
HpyCH4V TGCA 6 cut(s) 22, 185, 516, 531, 642, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 210, 594
HpySE526I ACGT 2 cut(s) 87, 261
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 4 cut(s) 419, 445, 658, 844
HspAI GCGC 1 cut(s) 720
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 6 cut(s) 75, 94, 174, 379, 388, 558
LmnI GCTCC 1 cut(s) 769
Lsp1109I GCAGC 1 cut(s) 787
LweI GCATC 4 cut(s) 31, 518, 651, 699
MaeI CTAG 2 cut(s) 159, 857
MaeII ACGT 2 cut(s) 87, 261
MalI GATC 6 cut(s) 77, 96, 176, 381, 390, 560
MbiI CCGCTC 1 cut(s) 772
MboI GATC 6 cut(s) 75, 94, 174, 379, 388, 558
MflI RGATCY 4 cut(s) 75, 379, 388, 558
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 1 cut(s) 589
MlyI GAGTC 1 cut(s) 116
MroXI GAANNNNTTC 1 cut(s) 201
MseI TTAA 5 cut(s) 84, 584, 794, 851, 919
MspCI CTTAAG 1 cut(s) 583
MspI CCGG 3 cut(s) 26, 266, 338
MspR9I CCNGG 2 cut(s) 266, 267
MvnI CGCG 1 cut(s) 720
MwoI GCNNNNNNNGC 1 cut(s) 113
NciI CCSGG 2 cut(s) 266, 267
NcoI CCATGG 1 cut(s) 441
NdeII GATC 6 cut(s) 75, 94, 174, 379, 388, 558
NlaIII CATG 4 cut(s) 419, 445, 658, 844
NlaIV GGNNCC 2 cut(s) 77, 452
NmeAIII GCCGAG 1 cut(s) 370
PaeR7I CTCGAG 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 3 cut(s) 609, 636, 890
PkrI GCNGC 3 cut(s) 277, 774, 777
Ple19I CGATCG 1 cut(s) 177
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 87
PspFI CCCAGC 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 77, 452
PspOMI GGGCCC 1 cut(s) 450
PspPI GGNCC 5 cut(s) 335, 438, 450, 451, 664
PsuI RGATCY 4 cut(s) 75, 379, 388, 558
PvuI CGATCG 1 cut(s) 177
RsaI GTAC 3 cut(s) 425, 716, 810
RsaNI GTAC 3 cut(s) 424, 715, 809
SaqAI TTAA 5 cut(s) 84, 584, 794, 851, 919
SatI GCNGC 3 cut(s) 276, 773, 776
Sau3AI GATC 6 cut(s) 75, 94, 174, 379, 388, 558
Sau96I GGNCC 5 cut(s) 335, 438, 450, 451, 664
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 266, 267
SduI GDGCHC 1 cut(s) 454
SetI ASST 9 cut(s) 21, 45, 53, 90, 264, 429, 465, 619, 666
SfaNI GCATC 4 cut(s) 31, 518, 651, 699
Sfr274I CTCGAG 1 cut(s) 677
SinI GGWCC 1 cut(s) 664
SlaI CTCGAG 1 cut(s) 677
SmaI CCCGGG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 583, 677
SmoI CTYRAG 2 cut(s) 583, 677
Sse9I AATT 1 cut(s) 589
SsiI CCGC 5 cut(s) 29, 275, 278, 718, 772
SspMI CTAG 2 cut(s) 159, 857
StyD4I CCNGG 2 cut(s) 264, 265
StyI CCWWGG 2 cut(s) 158, 441
TaaI ACNGT 2 cut(s) 712, 733
TaiI ACGT 2 cut(s) 90, 264
TaqI TCGA 3 cut(s) 57, 173, 678
TasI AATT 1 cut(s) 589
TauI GCSGC 2 cut(s) 278, 775
TfiI GAWTC 3 cut(s) 609, 636, 890
Tru1I TTAA 5 cut(s) 84, 584, 794, 851, 919
Tru9I TTAA 5 cut(s) 84, 584, 794, 851, 919
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 775
TspDTI ATGAA 5 cut(s) 130, 210, 321, 404, 643
TspGWI ACGGA 1 cut(s) 533
TspMI CCCGGG 1 cut(s) 265
TspRI CASTG 1 cut(s) 118
Vha464I CTTAAG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 677
XmaI CCCGGG 1 cut(s) 265
XmaJI CCTAGG 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 201
XspI CTAG 2 cut(s) 159, 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.