Rorug07G0046100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012922
Physical Location & Seq
Reverse (-)
3366870 .. 3367288
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0046100.1

Sequence Viewer

Length: 381 bp
ATGAAGCTGACCCCTGTGCGCTTATTTTACAGGCAAGCCACTGAGAACTTTGCAGGATCTTCTCCGGCTGTACAATCTTCCTCCAGGCCTGTTTCCCCGAAACATAAAATGCTACGAGTTCGACGAATCAAAGGGGAAGCTCATTGTGTACTTGACCTCTGCCTGTACGCAGTTCGAGTCAAGGCAACATTGACAAGGGGAAAGCTGGATGTAATAGAAGGAATGAAGACAAAGGTTATGCTGGTTTATATCAAAGTCACTAGTGTAGCTGTAGAAGGCTACAAGTCTGATAAAGTTTGGTTCACTGCTGGGTTGAAGAGATCAAGACCCAAAGATGCCTACGAAATGCCTCGTGATGCCTTCAGTGTTGATGAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

126

Amino Acids

14.28

Weight (kDa)

10.01

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 54 - 115 4.9e-11 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012922)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G63430 AT1G63430 AT1G63430
fragaria_vesca FvH4_5g02060
malus_domestica MD06G1079300.v1.1 MD14G1101900.v1.1
prunus_persica Prupe.5G097500_v2.0.a1
pyrus_communis pycom06g07640 pycom14g09870
rosa_chinensis RchiOBHm_Chr7g0198241
rosa_laevigata RLG00000003881
rosa_multiflora Rmu_sc0001250.1_g000046
rosa_roxburghii Rroxscaffold_3G00257900
rosa_rugosa Rorug07G0046100
rosa_samantha Rh7BG172900 Rh7CG179400 Rh7DG172200
rosa_wichuraiana Rw7G014840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 1 cut(s) 374
AcuI CTGAAG 1 cut(s) 346
AfaI GTAC 3 cut(s) 72, 150, 167
AgsI TTSAA 1 cut(s) 316
AhlI ACTAGT 1 cut(s) 260
AjnI CCWGG 1 cut(s) 83
AluBI AGCT 4 cut(s) 7, 140, 205, 269
AluI AGCT 4 cut(s) 7, 140, 205, 269
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 86
ApoI RAATTY 1 cut(s) 374
AspLEI GCGC 1 cut(s) 21
BauI CACGAG 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 85
BcuI ACTAGT 1 cut(s) 260
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 85
BmrFI CCNGG 1 cut(s) 85
BmsI GCATC 2 cut(s) 325, 346
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 85
BseGI GGATG 1 cut(s) 214
BseMII CTCAG 1 cut(s) 33
BseYI CCCAGC 1 cut(s) 308
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 65
BsnI GGCC 1 cut(s) 88
Bsp1407I TGTACA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 56, 320
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 70
BssMI GATC 2 cut(s) 56, 320
BssSI CACGAG 1 cut(s) 351
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 42
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 2 cut(s) 59, 323
BstMBI GATC 2 cut(s) 56, 320
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 270
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 1 cut(s) 88
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 3 cut(s) 39, 303, 370
Cac8I GCNNGC 1 cut(s) 36
CfoI GCGC 1 cut(s) 21
Csp6I GTAC 3 cut(s) 71, 149, 166
CviJI RGCY 8 cut(s) 7, 38, 68, 88, 140, 205, 269, 279
CviKI_1 RGCY 8 cut(s) 7, 38, 68, 88, 140, 205, 269, 279
CviQI GTAC 3 cut(s) 71, 149, 166
DdeI CTNAG 1 cut(s) 42
DpnI GATC 2 cut(s) 58, 322
DpnII GATC 2 cut(s) 56, 320
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco147I AGGCCT 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 346
EcoRII CCWGG 1 cut(s) 83
FaiI YATR 3 cut(s) 105, 239, 249
FokI GGATG 1 cut(s) 221
FspBI CTAG 1 cut(s) 261
GlaI GCGC 1 cut(s) 20
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 65
HhaI GCGC 1 cut(s) 21
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HinfI GANTC 2 cut(s) 126, 177
HpaII CCGG 1 cut(s) 65
Hpy166II GTNNAC 2 cut(s) 149, 303
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 324, 353
Hpy8I GTNNAC 2 cut(s) 149, 303
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 3 cut(s) 212, 269, 370
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 42
HspAI GCGC 1 cut(s) 19
Kzo9I GATC 2 cut(s) 56, 320
LweI GCATC 2 cut(s) 325, 346
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 58, 322
MboI GATC 2 cut(s) 56, 320
MboII GAAGA 4 cut(s) 51, 69, 238, 328
MflI RGATCY 1 cut(s) 56
MluCI AATT 1 cut(s) 374
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 3 cut(s) 91, 167, 360
MseI TTAA 1 cut(s) 379
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeII GATC 2 cut(s) 56, 320
NmuCI GTSAC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 121
PfeI GAWTC 1 cut(s) 126
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 1 cut(s) 83
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 3 cut(s) 72, 150, 167
RsaNI GTAC 3 cut(s) 71, 149, 166
SaqAI TTAA 1 cut(s) 379
Sau3AI GATC 2 cut(s) 56, 320
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 85
SetI ASST 6 cut(s) 9, 142, 159, 207, 237, 271
SfaNI GCATC 2 cut(s) 325, 346
SfcI CTRYAG 1 cut(s) 270
SpeI ACTAGT 1 cut(s) 260
Sse9I AATT 1 cut(s) 374
SseBI AGGCCT 1 cut(s) 88
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 121, 175
TasI AATT 1 cut(s) 374
TatI WGTACW 2 cut(s) 70, 148
TfiI GAWTC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TscAI CASTG 3 cut(s) 46, 310, 370
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 2 cut(s) 17, 239
TspRI CASTG 3 cut(s) 46, 310, 370
XapI RAATTY 1 cut(s) 374
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.