Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0016171

Physical Location & Seq

Genomic Coordinates Forward (+)

5237767 .. 5240022

Gene Structure 2256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTCACTTCAAGGAAGAAGATCCACAAGGATAAGGATGCTGAACCTACTGAGTTTGAGGAGTCTGTTGCACAGTCAATCTTTGATTTGGAGAACACAAACCAAGAGCTGAAAAGTGACTTGAAGGACTTGTACATTAACTCTGCAGCTCTCGTTGATGTTGCTGGAAATCGGAAGGCTGTTGTTATCCATGTTCCTTATAGACTGAGGAAGGCTTACCGCAAGATCCATGTTAGGCTTGTGAGGGAGCTTGAGAAGAAGTTCAGTGGAAAGGATGTGATTCTGATTGCCACACGTAGGATTGTGAGGCCTCCAAAGAAAGGCTCTGCTGCTCAACGTCCGCGCACTCGCACCCTGACTGCTGTTCATGAGGCAATATTGGAGGATGTTGTTTTACCTGCTGAAATTGTTGGCAAGCGTACCAGATATCGCCTTGATGGTTCCAAGATCATGAAGGTTTTCCTTGACCCGAAAGAGCGAAACAACACCGAGTATAAGCTGGAGAGCTTTTCTGCAGTTTACCGTAAGCTTTCAGGAAAAGATGTTGTTTTTGAATACCCCATTACCGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009553 GO:0009570 GO:0009791 GO:0009908 GO:0009987 GO:0010109 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019222 GO:0019538 GO:0019752 GO:0022414 GO:0031323 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0090567 GO:0099402 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

191

Amino Acids

22.01

Weight (kDa)

9.8

Isoelectric Point (pI)

27.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S7e	PF01251	7 - 186	1.1e-78	Ribosomal protein S7e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52520
fragaria_vesca	FvH4_5g00340 FvH4_5g00340
prunus_persica	Prupe.5G076000_v2.0.a1
pyrus_communis	pycom04g07460
rosa_chinensis	RchiOBHm_Chr7g0202211
rosa_laevigata	RLG00000003616
rosa_multiflora	Rmu_sc0005017.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254740
rosa_rugosa	Rorug07G0069000
rosa_samantha	Rh7AG196400 Rh7BG197600 Rh7CG207500 Rh7DG203000
rosa_wichuraiana	Rw7G017190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	406
AccII	CGCG	1 cut(s)	343
AciI	CCGC	2 cut(s)	220, 341
AclWI	GGATC	2 cut(s)	16, 220
AfaI	GTAC	2 cut(s)	134, 421
AfiI	CCNNNNNNNGG	2 cut(s)	297, 320
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	3 cut(s)	12, 124, 554
AluBI	AGCT	6 cut(s)	109, 149, 250, 499, 507, 529
AluI	AGCT	6 cut(s)	109, 149, 250, 499, 507, 529
AlwI	GGATC	2 cut(s)	16, 220
AoxI	GGCC	2 cut(s)	308, 570
ApeKI	GCWGC	2 cut(s)	146, 329
Asp700I	GAANNNNTTC	2 cut(s)	260, 458
AspLEI	GCGC	1 cut(s)	345
BarI	GAAGNNNNNNTAC	2 cut(s)	116, 148
BbvI	GCAGC	2 cut(s)	158, 316
BccI	CCATC	1 cut(s)	431
BfaI	CTAG	1 cut(s)	574
BfmI	CTRYAG	2 cut(s)	144, 513
BfuAI	ACCTGC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	147, 330
BlsI	GCNGC	2 cut(s)	148, 331
BmiI	GGNNCC	1 cut(s)	442
BmsI	GCATC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	2 cut(s)	297, 320
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	43, 280, 391
BseLI	CCNNNNNNNGG	2 cut(s)	297, 320
BseMII	CTCAG	2 cut(s)	42, 197
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	158, 316
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	310, 572
BslI	CCNNNNNNNGG	2 cut(s)	297, 320
BsnI	GGCC	2 cut(s)	310, 572
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	21, 225, 447
BspACI	CCGC	2 cut(s)	220, 341
BspANI	GGCC	2 cut(s)	310, 572
BspCNI	CTCAG	2 cut(s)	43, 198
BspFNI	CGCG	1 cut(s)	343
BspHI	TCATGA	2 cut(s)	367, 450
BspLI	GGNNCC	1 cut(s)	442
BspMAI	CTGCAG	2 cut(s)	148, 517
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	2 cut(s)	16, 220
BsrGI	TGTACA	1 cut(s)	132
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	3 cut(s)	21, 225, 447
Bst4CI	ACNGT	2 cut(s)	75, 524
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	416
BstDEI	CTNAG	2 cut(s)	51, 206
BstF5I	GGATG	3 cut(s)	43, 280, 391
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	3 cut(s)	24, 228, 450
BstMBI	GATC	3 cut(s)	21, 225, 447
BstSFI	CTRYAG	2 cut(s)	144, 513
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	2 cut(s)	158, 316
BstX2I	RGATCY	2 cut(s)	21, 225
BstYI	RGATCY	2 cut(s)	21, 225
BsuRI	GGCC	2 cut(s)	310, 572
BtsCI	GGATG	3 cut(s)	43, 280, 391
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	2 cut(s)	367, 450
CfoI	GCGC	1 cut(s)	345
Csp6I	GTAC	2 cut(s)	133, 420
CviAII	CATG	4 cut(s)	191, 230, 368, 451
CviQI	GTAC	2 cut(s)	133, 420
DdeI	CTNAG	2 cut(s)	51, 206
DpnI	GATC	3 cut(s)	23, 227, 449
DpnII	GATC	3 cut(s)	21, 225, 447
Eco147I	AGGCCT	2 cut(s)	310, 572
Eco32I	GATATC	1 cut(s)	428
EcoRV	GATATC	1 cut(s)	428
FaeI	CATG	4 cut(s)	194, 233, 371, 454
FaiI	YATR	6 cut(s)	192, 201, 231, 369, 452, 495
FatI	CATG	4 cut(s)	190, 229, 367, 450
Fnu4HI	GCNGC	2 cut(s)	147, 330
FokI	GGATG	3 cut(s)	50, 287, 398
Fsp4HI	GCNGC	2 cut(s)	147, 330
FspBI	CTAG	1 cut(s)	574
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	2 cut(s)	147, 330
GsuI	CTGGAG	1 cut(s)	521
HaeIII	GGCC	2 cut(s)	310, 572
HhaI	GCGC	1 cut(s)	345
Hin1II	CATG	4 cut(s)	194, 233, 371, 454
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HindIII	AAGCTT	1 cut(s)	527
HinfI	GANTC	2 cut(s)	62, 280
Hpy166II	GTNNAC	2 cut(s)	6, 520
Hpy188I	TCNGA	2 cut(s)	174, 285
Hpy188III	TCNNGA	3 cut(s)	368, 451, 534
Hpy8I	GTNNAC	2 cut(s)	6, 520
HpyAV	CCTTC	4 cut(s)	118, 169, 205, 448
HpyCH4III	ACNGT	2 cut(s)	75, 524
HpyCH4IV	ACGT	2 cut(s)	295, 337
HpyCH4V	TGCA	3 cut(s)	71, 146, 515
HpyF3I	CTNAG	2 cut(s)	51, 206
HpySE526I	ACGT	2 cut(s)	295, 337
Hsp92II	CATG	4 cut(s)	194, 233, 371, 454
HspAI	GCGC	1 cut(s)	343
Kzo9I	GATC	3 cut(s)	21, 225, 447
LmnI	GCTCC	1 cut(s)	247
LpnPI	CCDG	6 cut(s)	150, 368, 411, 436, 485, 519
Lsp1109I	GCAGC	2 cut(s)	158, 316
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	574
MaeII	ACGT	2 cut(s)	295, 337
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	23, 227, 449
MboI	GATC	3 cut(s)	21, 225, 447
MboII	GAAGA	3 cut(s)	28, 31, 268
MflI	RGATCY	2 cut(s)	21, 225
MluCI	AATT	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	8 cut(s)	52, 201, 237, 300, 321, 364, 376, 562
MroXI	GAANNNNTTC	2 cut(s)	260, 458
MseI	TTAA	1 cut(s)	138
MvnI	CGCG	1 cut(s)	343
NdeII	GATC	3 cut(s)	21, 225, 447
NlaIII	CATG	4 cut(s)	194, 233, 371, 454
NlaIV	GGNNCC	1 cut(s)	442
NmuCI	GTSAC	1 cut(s)	116
PagI	TCATGA	2 cut(s)	367, 450
PceI	AGGCCT	2 cut(s)	310, 572
PdmI	GAANNNNTTC	2 cut(s)	260, 458
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	148, 331
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	442
PstI	CTGCAG	2 cut(s)	148, 517
PsuI	RGATCY	2 cut(s)	21, 225
RsaI	GTAC	2 cut(s)	134, 421
RsaNI	GTAC	2 cut(s)	133, 420
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	2 cut(s)	147, 330
Sau3AI	GATC	3 cut(s)	21, 225, 447
SchI	GAGTC	1 cut(s)	71
SfaNI	GCATC	1 cut(s)	28
SfcI	CTRYAG	2 cut(s)	144, 513
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	1 cut(s)	405
SseBI	AGGCCT	2 cut(s)	310, 572
SsiI	CCGC	2 cut(s)	220, 341
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	1 cut(s)	574
StuI	AGGCCT	2 cut(s)	310, 572
TaaI	ACNGT	2 cut(s)	75, 524
TaiI	ACGT	2 cut(s)	298, 340
TasI	AATT	1 cut(s)	405
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	2 cut(s)	146, 329
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	2 cut(s)	356, 467
TspRI	CASTG	1 cut(s)	271
XmnI	GAANNNNTTC	2 cut(s)	260, 458
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.