Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0015633

Physical Location & Seq

Genomic Coordinates Reverse (-)

10545215 .. 10554742

Gene Structure 9528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3930 bp

ATGGAAGTGAATTTAGTAGCAAGTGGAATTCAAGAAGAAGATGCTTTTGGAGTTAACGAGAATTATCACAATGACAATCCTGTTTTGGAGGGCGAAAATGAAACGTGTGGGATTTGCATGGATACCATTATCGATAGGGGTGTTCTGGATTGCTGCCACCACTGGTTTTGTTTTGCATGCATCGACAATTGGGCCACTATTACAAATCTTTGCCCGCTTTGCCAGAACGAATTTCAAGTGATCACATGTGTTCCGGTATATGATACTGTTGGGAGCAACAAAGTGGATGATGATCCATCTTCCAGAGATGATGATTGGAGTGTTGAAGGGATGAATAACACTGTCTCATTTCCATCATACTATATTGATGAAAACTCAGTTATCTGCTTGGATGGAGATGGTTGCAAGGTTCGAAGTGGATCAGCAAAGATGGAGGAGGATTCCAGTCTTGATACATCAATTGCCTGTGATTCATGCGACTTATGGTACCATGCTTTCTGTGTGGGGTTTGATCCTGAAAGCACATCTGAGAATACATGGTTATGCCCCAGATGTGTAGTCGGTGAAATGCCACAAAACTCAGATGTAGGTTCAATACAGAGGTCTAACGGCCAGTATGATCTTGAAAATAGTGATTCTTTGACTGAGGATACTTTTTCAAGAAAGGTGTCTGTATCTTCTGTTGATACTGGTGACACAGCTGTTGTAGTCTCAATGGTTGGAGATTCAGGTCAGAGCATTTTGCCAAACGTTGAAGTTGGCAAGGGCTTTGAAACTGAATCACTGGTATCAGCTTCTGAAGATCGCCACGAGTCGGAAATACCTTCAGGGGTGAAAACTATTAAATTGGAAGCACAGGAATTAGAACTGTCCCTATCCTGTGATACCTCCTTCAGTTTACCTTCAAATGCTTTAGCACATAAGCAGGTTAAGTCGAGTACTGGTGAATCAATGAATGACCTCTGTAGCTTTGATGGCCTCAAAAGTTCTTCGGGGAAGCTTAATGAATCACATATTAGTAAAAAACTATCTGACAGCCAATCCAATATGGGTCTAAATCTTGGGTTATGTGGGGGTTCGTTTTTGTCAGTTGACACGAAAAGTACCGGAACTGAACACCACGACACTAAAGATCTGAAGCAGCATAATCCTTCAGAAGAATATTTGCCAAAAGCTGACAGGATTGTACCGGATGCTAGTTCAGATGCTCCTGCCATGACTGGTGGAAAGAGAAAACGCACAGATTGCAGTGATGGCGTTAGTGCTGATGATAGAGATACAAACCCTAAGCTTAAGAACAAAGTTGCTGTAAAGAAAATCAGAGATGGGGAGAAGATTCAACAGATTGCTTCCAAGGACCAAGCCAAAGCATGTCTTTCAGACTCTGGAAATGGCTCCAGCCTGACTGTAGTTCCCAAAGATAGCGAGTTAAAATGTCATCCTGTACTGAACCCTACTTCTGAAATATTGAGCATTGTTCGAACCACAAACCGTAAGTCTTCCAAGGGGCTTGCGGGCCCTAAATCTGTCAAATCATCAGAAGAACAAGATTCAATGGCTAGTTTGAGAGTTAAAAAGATAATGAGGAGAGATGCTGAGGACAAGGAATCATCTATGGTTGTTCAGAGACTAAGAAAGGAAATAAGAGAAGCTGTCCGCAACAAATCTTCAAAAGATATTGGTGAAAACCAGTTTGATCCAAAGCTTCTTGATGCCTTTAGGGCAGCTCTAGCAGGATCTAAAACTGAACCTGTAAAGAAGCTATCACAGTTAGCACTGAAGGCAAGGAAGTCAATGTTGGAGAAGGGAAAAGTACGCGAGAATTTAACAAAGAAAATCTATGGAACATCCAATGGAAGACGAAAACGTGCATGGGACCGGGACTGTCAAATTGAATTTTGGAAGCATCGTTGCATTGGAGAGCCTGAAAAGATTGAGACTTTAAAGTCAGTTCTTGGCCTTCTCAATGGGAGTTCACAGGGTTCAGATACAAAGCATGAGTCTGATACGCAGTCCACAAGTCCAATTCTTTCCAGGTTGTATTTAGCAGATACGTCTGTATTTCCAAGGAAAGATAATATTAAGCCTCTTCTAGCTCTTAAAGCTGCTGGTAATTCTGAGCAGAATGATAAACAACTCACCACAATGGAACTGTGTTCAAAGCCTTCTCTTGATAATGTCACTTCGACTTCCTCAGAAACGACTAAGGTTTCATCAAAAGTTGGGGTTCCTTTATTAGAAACTAATGGGAATAAAAACGATTCTCCAAGCTCAGACAATAGTGCTGCTTCTAACAAAGGACATGAAGATAGACACTCAGAAGGGTCCTTGGTTTCTTCATCTGGTGGTTCTAAATTGAAAACCAAGAAGGATGTAGTTGATAAAACTGGTGATATAAAAGTTGATAAAAGGAAATGGGCTCTGGAGGTTCTTGCCCGGAAAATGAGTGGTACAGGCAGGAACACAACAAACGAAAAACAAGAAGGCAACTCTGTGCTCAAAGGAAATTACCCTTTGCTAGCTCAGTTACCAGTAGACATGAAACCAGTTTTGTCGCCCAGTCATCACAATAAAGTTCCAATGTCAGTGAGGCAGACGCAGCTATACCGTCTGACAGAGCACTTGCTGAGGAAAGCTAATCTGCCGGTGATTCGTAGAACTGCGAACACGGAGTTAGCTGTTGCAGATGCAATTAATATAGAAAAGGAGATTGCGGATAGGTCAAACAGCAAGCTAGTGTATCTGAATCTATGTTCCCAGGAGATTTTGCATCTTTCAAAAGGTAACAAAGCTAGTGGAACCCCAGTTCTTAGTTCCTCCCCATCTTCAGTCCATGCTGATAGATCAGGGGAAGCTGTGCATGAACCTTCAACTGATCCTGTAACTGAAGAAGCACTGAGAAATGCTGGTCTTCTGTCCGATTCTCCTCCAAACAGTCCACGTTCCAATATGGAAGTTCCTGCTGAAGAAGATGATCCCTCATTAGATATCAGAGAGGAGGGGCCTGATAATGTATTTGAAATGGATGAAAATCCAGATCTGGACATCTATGGTGATTTTGAGTATAATTTGGAAGATGAAGACTATATTGGTGCCACTGCTACAAAAGTCTCTAATGTACAACCAGAGGAAGGGGCATCAAAAATTAGAGTTGTTTTCTCTACTTTTCAGCCTGAAACAACTAATCATACTTTAGATCTTGGCAGTACTGAGAAGGTGGTTGAAGTACAAAAAGATTCTTCCTGCATGCTCGAGAATGATACTCATTCAGGTCTGGAAAATTCAACCAGGGAGTGTGAGACTGACAAGTCTTGTGTTCCATTGGAATCCATATTTGGTAAAGAAGGTGAAGAGCTTTCTGTTGCAGAATGTGAAGAATTATATGGACCAGATAAAGAACCACTGATCAAGGAATTTCCAGGAGCATCAGAAATTCTATATGCATCAATAGATGCAGGTTTGGTTAAAGACAACTATCCAAAAGAGAATGAAAGTTGTGGACCAAAGCCAACCGAAGAAATAACATCTCCATCTGGTAATGAGAACCATGGAAAAAATATATCAGTTGCTAGTCTTGGTTGCACTTCCTCTGGTGGAGAAGATTCAACAAACCATTCCCAACCAGATGGAAGTGGTGAAAGGAAGAAGAAATCTAATACGGATTCAAAAGATCAGTCCAACAGCATCAATTCTATATCCAAGAAGGTTGAAGCCTACATCAAAGAGCATATCAGACCACTATGCAAGAGCGGTGTGATTACAACTGAACAATATAAGTGGGCTGTGGCGAAAACAACTGAGAAAGTCATGAAATACCATTCTAAAGCCAAGAGCGCAAGTTTCCTAATCAAAGAAGGGGAGAAGGTGAAGAAACTTGCAGAGCAGTATGTTGAGACGTCCCAAAAGAAGGAGAAAGGTGACCCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0002376 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009814 GO:0009987 GO:0012501 GO:0016020 GO:0019897 GO:0019898 GO:0023052 GO:0033554 GO:0034050 GO:0036094 GO:0043207 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045087 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071944 GO:0097159 GO:0098542 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

1309

Amino Acids

142.9

Weight (kDa)

5.21

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	33 - 79	3.8e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	35 - 75	1.6e-06	Ring finger domain
PHD	PF00628	150 - 185	5.4e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015633)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23430 FvH4_5g23430 FvH4_5g23430
malus_domestica	MD06G1024300.v1.1
prunus_persica	Prupe.5G025300_v2.0.a1 Prupe.5G025300_v2.0.a1
pyrus_communis	pycom06g01970
rosa_chinensis	RchiOBHm_Chr7g0212491
rosa_multiflora	Rmu_sc0007576.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246750
rosa_rugosa	Rorug07G0134600 Rorug07G0134800
rosa_samantha	Rh7BG261400 Rh7CG284200 Rh7DG274100
rosa_wichuraiana	Rw7G022880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3928
AasI	GACNNNNNNGTC	2 cut(s)	1945, 3307
AatII	GACGTC	1 cut(s)	3899
Acc36I	ACCTGC	2 cut(s)	916, 3446
Acc65I	GGTACC	1 cut(s)	486
AccB1I	GGYRCC	2 cut(s)	486, 3092
AccBSI	CCGCTC	1 cut(s)	3750
AccI	GTMKAC	1 cut(s)	2535
AccII	CGCG	1 cut(s)	1818
AciI	CCGC	5 cut(s)	215, 1514, 1657, 2714, 3750
AclI	AACGTT	1 cut(s)	750
AclWI	GGATC	7 cut(s)	287, 427, 506, 1691, 1744, 2870, 2969
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	8 cut(s)	10, 27, 230, 1822, 1895, 3280, 3413, 3432
AcuI	CTGAAG	9 cut(s)	810, 819, 877, 1137, 1157, 1799, 2811, 2907, 2985
AcyI	GRCGYC	1 cut(s)	3896
AfiI	CCNNNNNNNGG	3 cut(s)	814, 3131, 3907
AflII	CTTAAG	1 cut(s)	1292
AflIII	ACRYGT	2 cut(s)	104, 245
AjnI	CCWGG	4 cut(s)	2033, 2757, 3287, 3418
AjuI	GAANNNNNNNTTGG	8 cut(s)	30, 62, 1781, 1813, 3072, 3104, 3318, 3350
AloI	GAACNNNNNNTCC	2 cut(s)	2790, 2822
Alw21I	GWGCWC	2 cut(s)	2499, 2622
Alw26I	GTCTC	7 cut(s)	349, 715, 1621, 1931, 3115, 3293, 3887
AlwI	GGATC	7 cut(s)	287, 427, 506, 1691, 1744, 2870, 2969
AlwNI	CAGNNNCTG	2 cut(s)	797, 1385
Ama87I	CYCGRG	1 cut(s)	3251
AoxI	GGCC	6 cut(s)	192, 610, 976, 1516, 1957, 3002
ApaI	GGGCCC	1 cut(s)	1520
ApeKI	GCWGC	6 cut(s)	153, 1141, 1724, 2105, 2285, 2599
ApoI	RAATTY	8 cut(s)	10, 27, 230, 1822, 1895, 3280, 3413, 3432
ArsI	GACNNNNNNTTYG	6 cut(s)	1481, 1513, 1985, 2017, 3659, 3691
AseI	ATTAAT	1 cut(s)	2694
Asp718I	GGTACC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	3836
AspS9I	GGNCC	9 cut(s)	192, 1357, 1516, 1517, 1876, 2325, 3002, 3386, 3500
AsuC2I	CCSGG	2 cut(s)	1880, 2437
AsuII	TTCGAA	2 cut(s)	412, 1480
AsuNHI	GCTAGC	1 cut(s)	2518
AvaI	CYCGRG	1 cut(s)	3251
AvaII	GGWCC	5 cut(s)	1357, 1876, 2325, 3386, 3500
BaeGI	GKGCMC	1 cut(s)	1520
BaeI	ACNNNNGTAYC	2 cut(s)	2043, 2076
BanI	GGYRCC	2 cut(s)	486, 3092
BanII	GRGCYC	2 cut(s)	1520, 2422
BauI	CACGAG	1 cut(s)	809
BbsI	GAAGAC	4 cut(s)	1491, 1864, 2903, 3087
Bbv12I	GWGCWC	2 cut(s)	2499, 2622
BbvCI	CCTCAGC	2 cut(s)	1596, 2627
BbvI	GCAGC	6 cut(s)	140, 1153, 1736, 2092, 2272, 2611
BceAI	ACGGC	1 cut(s)	625
BciT130I	CCWGG	4 cut(s)	2035, 2759, 3289, 3420
BciVI	GTATCC	2 cut(s)	115, 643
BclI	TGATCA	2 cut(s)	240, 3405
BcnI	CCSGG	2 cut(s)	1880, 2437
BcoDI	GTCTC	7 cut(s)	349, 715, 1621, 1931, 3115, 3293, 3887
BfaI	CTAG	8 cut(s)	1197, 1560, 1730, 2093, 2519, 2735, 2793, 3570
BfmI	CTRYAG	2 cut(s)	964, 1407
BfrI	CTTAAG	1 cut(s)	1292
BfuAI	ACCTGC	2 cut(s)	916, 3446
BfuI	GTATCC	2 cut(s)	115, 643
BglI	GCCNNNNNGGC	1 cut(s)	1721
BglII	AGATCT	3 cut(s)	1132, 3037, 3196
BisI	GCNGC	6 cut(s)	154, 1142, 1725, 2106, 2286, 2600
BlsI	GCNGC	6 cut(s)	155, 1143, 1726, 2107, 2287, 2601
BmcAI	AGTACT	2 cut(s)	940, 3208
Bme1390I	CCNGG	6 cut(s)	1880, 2035, 2437, 2759, 3289, 3420
Bme18I	GGWCC	5 cut(s)	1357, 1876, 2325, 3386, 3500
BmeT110I	CYCGRG	1 cut(s)	3251
BmgT120I	GGNCC	9 cut(s)	192, 1357, 1516, 1517, 1876, 2325, 3002, 3386, 3500
BmiI	GGNNCC	9 cut(s)	488, 1396, 1518, 1877, 2229, 2326, 2800, 3003, 3094
BmrFI	CCNGG	6 cut(s)	1880, 2035, 2437, 2759, 3289, 3420
BmrI	ACTGGG	2 cut(s)	2553, 2798
BmtI	GCTAGC	1 cut(s)	2522
BmuI	ACTGGG	2 cut(s)	2553, 2798
BpiI	GAAGAC	4 cut(s)	1491, 1864, 2903, 3087
BpmI	CTGGAG	2 cut(s)	1381, 2444
Bpu10I	CCTNAGC	3 cut(s)	1287, 1596, 2627
Bpu14I	TTCGAA	2 cut(s)	412, 1480
BpuMI	CCSGG	2 cut(s)	1880, 2437
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	2 cut(s)	291, 3030
BsaHI	GRCGYC	1 cut(s)	3896
BsaJI	CCNNGG	7 cut(s)	1353, 1503, 2066, 2328, 2757, 3288, 3547
BsaWI	WCCGGW	3 cut(s)	253, 1106, 1189
Bsc4I	CCNNNNNNNGG	3 cut(s)	814, 3131, 3907
Bse118I	RCCGGY	1 cut(s)	2644
Bse8I	GATNNNNATC	2 cut(s)	291, 3030
BseBI	CCWGG	4 cut(s)	2035, 2759, 3289, 3420
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	7 cut(s)	1353, 1503, 2066, 2328, 2757, 3288, 3547
BseGI	GGATG	8 cut(s)	292, 336, 397, 1198, 1438, 1847, 2377, 3031
BseJI	GATNNNNATC	2 cut(s)	291, 3030
BseLI	CCNNNNNNNGG	3 cut(s)	814, 3131, 3907
BseRI	GAGGAG	4 cut(s)	449, 1600, 2916, 3011
BseSI	GKGCMC	1 cut(s)	1520
BseXI	GCAGC	6 cut(s)	140, 1153, 1736, 2092, 2272, 2611
Bsh1236I	CGCG	1 cut(s)	1818
BshFI	GGCC	6 cut(s)	194, 612, 978, 1518, 1959, 3004
BshNI	GGYRCC	2 cut(s)	486, 3092
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	2499, 2622
BsiHKCI	CYCGRG	1 cut(s)	3251
BsiSI	CCGG	6 cut(s)	254, 1107, 1190, 1879, 2437, 2645
BslFI	GGGAC	4 cut(s)	856, 1889, 1895, 3883
BslI	CCNNNNNNNGG	3 cut(s)	814, 3131, 3907
BsmAI	GTCTC	7 cut(s)	349, 715, 1621, 1931, 3115, 3293, 3887
BsmBI	CGTCTC	1 cut(s)	3887
BsmFI	GGGAC	4 cut(s)	856, 1889, 1895, 3883
BsnI	GGCC	6 cut(s)	194, 612, 978, 1518, 1959, 3004
BsoBI	CYCGRG	1 cut(s)	3251
Bsp119I	TTCGAA	2 cut(s)	412, 1480
Bsp120I	GGGCCC	1 cut(s)	1516
Bsp1286I	GDGCHC	4 cut(s)	1520, 2422, 2499, 2622
Bsp1407I	TGTACA	1 cut(s)	3118
Bsp19I	CCATGG	1 cut(s)	3547
BspACI	CCGC	5 cut(s)	215, 1514, 1657, 2714, 3750
BspANI	GGCC	6 cut(s)	194, 612, 978, 1518, 1959, 3004
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	1818
BspHI	TCATGA	1 cut(s)	3807
BspLI	GGNNCC	9 cut(s)	488, 1396, 1518, 1877, 2229, 2326, 2800, 3003, 3094
BspMI	ACCTGC	2 cut(s)	916, 3446
BspOI	GCTAGC	1 cut(s)	2522
BspPI	GGATC	7 cut(s)	287, 427, 506, 1691, 1744, 2870, 2969
BspQI	GCTCTTC	1 cut(s)	3345
BspT104I	TTCGAA	2 cut(s)	412, 1480
BspT107I	GGYRCC	2 cut(s)	486, 3092
BspTI	CTTAAG	1 cut(s)	1292
BsrBI	CCGCTC	1 cut(s)	3750
BsrFI	RCCGGY	1 cut(s)	2644
BsrGI	TGTACA	1 cut(s)	3118
BssAI	RCCGGY	1 cut(s)	2644
BssECI	CCNNGG	7 cut(s)	1353, 1503, 2066, 2328, 2757, 3288, 3547
BssNI	GRCGYC	1 cut(s)	3896
BssSI	CACGAG	1 cut(s)	809
BssT1I	CCWWGG	5 cut(s)	1353, 1503, 2066, 2328, 3547
Bst2BI	CACGAG	1 cut(s)	809
Bst2UI	CCWGG	4 cut(s)	2035, 2759, 3289, 3420
Bst6I	CTCTTC	2 cut(s)	2094, 3345
BstACI	GRCGYC	1 cut(s)	3896
BstAFI	CTTAAG	1 cut(s)	1292
BstAPI	GCANNNNNTGC	1 cut(s)	1245
BstAUI	TGTACA	1 cut(s)	3118
BstBI	TTCGAA	2 cut(s)	412, 1480
BstC8I	GCNNGC	7 cut(s)	178, 215, 1512, 1516, 2520, 2732, 3248
BstDSI	CCRYGG	1 cut(s)	3547
BstEII	GGTNACC	1 cut(s)	3917
BstF5I	GGATG	8 cut(s)	292, 336, 397, 1198, 1438, 1847, 2377, 3031
BstFNI	CGCG	1 cut(s)	1818
BstHHI	GCGC	1 cut(s)	3836
BstMAI	GTCTC	7 cut(s)	349, 715, 1621, 1931, 3115, 3293, 3887
BstNI	CCWGG	4 cut(s)	2035, 2759, 3289, 3420
BstNSI	RCATGY	4 cut(s)	180, 249, 1374, 3250
BstPI	GGTNACC	1 cut(s)	3917
BstSCI	CCNGG	6 cut(s)	1878, 2033, 2435, 2757, 3287, 3418
BstSFI	CTRYAG	2 cut(s)	964, 1407
BstSLI	GKGCMC	1 cut(s)	1520
BstUI	CGCG	1 cut(s)	1818
BstV1I	GCAGC	6 cut(s)	140, 1153, 1736, 2092, 2272, 2611
BstV2I	GAAGAC	4 cut(s)	1491, 1864, 2903, 3087
BstX2I	RGATCY	4 cut(s)	1132, 1736, 3037, 3196
BstXI	CCANNNNNNTGG	1 cut(s)	3626
BstYI	RGATCY	4 cut(s)	1132, 1736, 3037, 3196
Bsu15I	ATCGAT	1 cut(s)	132
BsuI	GTATCC	2 cut(s)	115, 643
BsuRI	GGCC	6 cut(s)	194, 612, 978, 1518, 1959, 3004
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	3547
BtsCI	GGATG	8 cut(s)	292, 336, 397, 1198, 1438, 1847, 2377, 3031
BtsI	GCAGTG	2 cut(s)	1255, 3096
BtsIMutI	CAGTG	9 cut(s)	160, 339, 782, 1255, 1775, 2592, 2894, 3096, 3401
BveI	ACCTGC	2 cut(s)	916, 3446
Cac8I	GCNNGC	7 cut(s)	178, 215, 1512, 1516, 2520, 2732, 3248
CaiI	CAGNNNCTG	2 cut(s)	797, 1385
CciI	TCATGA	1 cut(s)	3807
CfoI	GCGC	1 cut(s)	3836
Cfr10I	RCCGGY	1 cut(s)	2644
Cfr13I	GGNCC	9 cut(s)	192, 1357, 1516, 1517, 1876, 2325, 3002, 3386, 3500
ClaI	ATCGAT	1 cut(s)	132
CseI	GACGC	1 cut(s)	2605
CspCI	CAANNNNNGTGG	6 cut(s)	149, 184, 2776, 2811, 3758, 3793
DraI	TTTAAA	1 cut(s)	1944
DrdI	GACNNNNNNGTC	2 cut(s)	1945, 3307
DseDI	GACNNNNNNGTC	2 cut(s)	1945, 3307
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	2 cut(s)	2094, 3345
EarI	CTCTTC	2 cut(s)	2094, 3345
Eco130I	CCWWGG	5 cut(s)	1353, 1503, 2066, 2328, 3547
Eco24I	GRGCYC	2 cut(s)	1520, 2422
Eco32I	GATATC	1 cut(s)	2989
Eco47I	GGWCC	5 cut(s)	1357, 1876, 2325, 3386, 3500
Eco57I	CTGAAG	9 cut(s)	810, 819, 877, 1137, 1157, 1799, 2811, 2907, 2985
Eco88I	CYCGRG	1 cut(s)	3251
Eco91I	GGTNACC	1 cut(s)	3917
EcoO109I	RGGNCCY	3 cut(s)	1517, 2325, 3002
EcoO65I	GGTNACC	1 cut(s)	3917
EcoRI	GAATTC	1 cut(s)	27
EcoRII	CCWGG	4 cut(s)	2033, 2757, 3287, 3418
EcoRV	GATATC	1 cut(s)	2989
EcoT14I	CCWWGG	5 cut(s)	1353, 1503, 2066, 2328, 3547
EcoT22I	ATGCAT	2 cut(s)	182, 3445
EcoT38I	GRGCYC	2 cut(s)	1520, 2422
ErhI	CCWWGG	5 cut(s)	1353, 1503, 2066, 2328, 3547
Esp3I	CGTCTC	1 cut(s)	3887
FalI	AAGNNNNNCTT	2 cut(s)	1359, 1391
FaqI	GGGAC	4 cut(s)	856, 1889, 1895, 3883
FauI	CCCGC	2 cut(s)	222, 1507
FbaI	TGATCA	2 cut(s)	240, 3405
FblI	GTMKAC	1 cut(s)	2535
Fnu4HI	GCNGC	6 cut(s)	154, 1142, 1725, 2106, 2286, 2600
FokI	GGATG	8 cut(s)	299, 343, 404, 1205, 1425, 1834, 2384, 3038
FriOI	GRGCYC	2 cut(s)	1520, 2422
Fsp4HI	GCNGC	6 cut(s)	154, 1142, 1725, 2106, 2286, 2600
FspBI	CTAG	8 cut(s)	1197, 1560, 1730, 2093, 2519, 2735, 2793, 3570
GlaI	GCGC	1 cut(s)	3835
GluI	GCNGC	6 cut(s)	154, 1142, 1725, 2106, 2286, 2600
GsuI	CTGGAG	2 cut(s)	1381, 2444
HaeIII	GGCC	6 cut(s)	194, 612, 978, 1518, 1959, 3004
HapII	CCGG	6 cut(s)	254, 1107, 1190, 1879, 2437, 2645
HgaI	GACGC	1 cut(s)	2605
HhaI	GCGC	1 cut(s)	3836
Hin1I	GRCGYC	1 cut(s)	3896
Hin6I	GCGC	1 cut(s)	3834
HinP1I	GCGC	1 cut(s)	3834
HincII	GTYRAC	2 cut(s)	55, 1093
HindII	GTYRAC	2 cut(s)	55, 1093
HindIII	AAGCTT	3 cut(s)	998, 1289, 1703
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	6 cut(s)	254, 1107, 1190, 1879, 2437, 2645
Hpy166II	GTNNAC	8 cut(s)	55, 899, 1093, 1976, 2016, 2536, 2939, 3500
Hpy8I	GTNNAC	8 cut(s)	55, 899, 1093, 1976, 2016, 2536, 2939, 3500
HpyCH4IV	ACGT	6 cut(s)	104, 750, 1867, 2054, 2941, 3896
HpySE526I	ACGT	6 cut(s)	104, 750, 1867, 2054, 2941, 3896
Hsp92I	GRCGYC	1 cut(s)	3896
HspAI	GCGC	1 cut(s)	3834
KpnI	GGTACC	1 cut(s)	490
Ksp22I	TGATCA	2 cut(s)	240, 3405
KspAI	GTTAAC	1 cut(s)	55
LguI	GCTCTTC	1 cut(s)	3345
LmnI	GCTCC	4 cut(s)	273, 1213, 1400, 3422
Lsp1109I	GCAGC	6 cut(s)	140, 1153, 1736, 2092, 2272, 2611
MaeI	CTAG	8 cut(s)	1197, 1560, 1730, 2093, 2519, 2735, 2793, 3570
MaeII	ACGT	6 cut(s)	104, 750, 1867, 2054, 2941, 3896
MaeIII	GTNAC	6 cut(s)	692, 2179, 2526, 2783, 2881, 3917
MbiI	CCGCTC	1 cut(s)	3750
MfeI	CAATTG	2 cut(s)	187, 459
MflI	RGATCY	4 cut(s)	1132, 1736, 3037, 3196
MhlI	GDGCHC	4 cut(s)	1520, 2422, 2499, 2622
MlyI	GAGTC	3 cut(s)	821, 1376, 2009
MmeI	TCCRAC	4 cut(s)	700, 795, 1779, 3702
Mph1103I	ATGCAT	2 cut(s)	182, 3445
MslI	CAYNNNNRTG	2 cut(s)	541, 2144
MspA1I	CMGCKG	1 cut(s)	701
MspCI	CTTAAG	1 cut(s)	1292
MspI	CCGG	6 cut(s)	254, 1107, 1190, 1879, 2437, 2645
MspR9I	CCNGG	6 cut(s)	1880, 2035, 2437, 2759, 3289, 3420
MunI	CAATTG	2 cut(s)	187, 459
MvaI	CCWGG	4 cut(s)	2035, 2759, 3289, 3420
MvnI	CGCG	1 cut(s)	1818
NciI	CCSGG	2 cut(s)	1880, 2437
NcoI	CCATGG	1 cut(s)	3547
NheI	GCTAGC	1 cut(s)	2518
NlaIV	GGNNCC	9 cut(s)	488, 1396, 1518, 1877, 2229, 2326, 2800, 3003, 3094
NmuCI	GTSAC	3 cut(s)	692, 2179, 3917
NsiI	ATGCAT	2 cut(s)	182, 3445
NspI	RCATGY	4 cut(s)	180, 249, 1374, 3250
NspV	TTCGAA	2 cut(s)	412, 1480
PaeI	GCATGC	2 cut(s)	180, 3250
PaeR7I	CTCGAG	1 cut(s)	3251
PagI	TCATGA	1 cut(s)	3807
PciI	ACATGT	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	3345
PfoI	TCCNGGA	1 cut(s)	3418
PkrI	GCNGC	6 cut(s)	155, 1143, 1726, 2107, 2287, 2601
PleI	GAGTC	3 cut(s)	820, 1376, 2008
PpsI	GAGTC	3 cut(s)	820, 1376, 2008
PpuMI	RGGWCCY	1 cut(s)	2325
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	2694
PsiI	TTATAA	1 cut(s)	3928
Psp1406I	AACGTT	1 cut(s)	750
Psp5II	RGGWCCY	1 cut(s)	2325
Psp6I	CCWGG	4 cut(s)	2033, 2757, 3287, 3418
PspEI	GGTNACC	1 cut(s)	3917
PspGI	CCWGG	4 cut(s)	2033, 2757, 3287, 3418
PspN4I	GGNNCC	9 cut(s)	488, 1396, 1518, 1877, 2229, 2326, 2800, 3003, 3094
PspOMI	GGGCCC	1 cut(s)	1516
PspPI	GGNCC	9 cut(s)	192, 1357, 1516, 1517, 1876, 2325, 3002, 3386, 3500
PspPPI	RGGWCCY	1 cut(s)	2325
PstNI	CAGNNNCTG	2 cut(s)	797, 1385
PsuI	RGATCY	4 cut(s)	1132, 1736, 3037, 3196
PvuII	CAGCTG	1 cut(s)	701
RseI	CAYNNNNRTG	2 cut(s)	541, 2144
SapI	GCTCTTC	1 cut(s)	3345
SatI	GCNGC	6 cut(s)	154, 1142, 1725, 2106, 2286, 2600
Sau96I	GGNCC	9 cut(s)	192, 1357, 1516, 1517, 1876, 2325, 3002, 3386, 3500
ScaI	AGTACT	2 cut(s)	940, 3208
SchI	GAGTC	3 cut(s)	821, 1376, 2009
ScrFI	CCNGG	6 cut(s)	1880, 2035, 2437, 2759, 3289, 3420
SduI	GDGCHC	4 cut(s)	1520, 2422, 2499, 2622
SfcI	CTRYAG	2 cut(s)	964, 1407
Sfr274I	CTCGAG	1 cut(s)	3251
SfuI	TTCGAA	2 cut(s)	412, 1480
SinI	GGWCC	5 cut(s)	1357, 1876, 2325, 3386, 3500
SlaI	CTCGAG	1 cut(s)	3251
SmiMI	CAYNNNNRTG	2 cut(s)	541, 2144
SmlI	CTYRAG	2 cut(s)	1292, 3251
SmoI	CTYRAG	2 cut(s)	1292, 3251
SphI	GCATGC	2 cut(s)	180, 3250
SsiI	CCGC	5 cut(s)	215, 1514, 1657, 2714, 3750
SspI	AATATT	3 cut(s)	1163, 1467, 2080
SspMI	CTAG	8 cut(s)	1197, 1560, 1730, 2093, 2519, 2735, 2793, 3570
StyD4I	CCNGG	6 cut(s)	1878, 2033, 2435, 2757, 3287, 3418
StyI	CCWWGG	5 cut(s)	1353, 1503, 2066, 2328, 3547
TaiI	ACGT	6 cut(s)	107, 753, 1870, 2057, 2944, 3899
TaqI	TCGA	7 cut(s)	132, 183, 412, 935, 1480, 2186, 3252
TatI	WGTACW	5 cut(s)	938, 1444, 3118, 3206, 3226
TscAI	CASTG	9 cut(s)	167, 346, 789, 1255, 1782, 2592, 2901, 3103, 3408
TseFI	GTSAC	3 cut(s)	692, 2179, 3917
TseI	GCWGC	6 cut(s)	153, 1141, 1724, 2105, 2285, 2599
Tsp45I	GTSAC	3 cut(s)	692, 2179, 3917
TspGWI	ACGGA	2 cut(s)	2684, 3674
TspRI	CASTG	9 cut(s)	167, 346, 789, 1255, 1782, 2592, 2901, 3103, 3408
Vha464I	CTTAAG	1 cut(s)	1292
VpaK11BI	GGWCC	5 cut(s)	1357, 1876, 2325, 3386, 3500
VspI	ATTAAT	1 cut(s)	2694
XapI	RAATTY	8 cut(s)	10, 27, 230, 1822, 1895, 3280, 3413, 3432
XceI	RCATGY	4 cut(s)	180, 249, 1374, 3250
XhoI	CTCGAG	1 cut(s)	3251
XmiI	GTMKAC	1 cut(s)	2535
XspI	CTAG	8 cut(s)	1197, 1560, 1730, 2093, 2519, 2735, 2793, 3570
ZraI	GACGTC	1 cut(s)	3897
ZrmI	AGTACT	2 cut(s)	940, 3208
Zsp2I	ATGCAT	2 cut(s)	182, 3445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.