Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0012467

Physical Location & Seq

Genomic Coordinates Reverse (-)

23322826 .. 23326949

Gene Structure 4124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGTAGCTCGTCACCGGCACATTCTTCGATATCGACGACGGCGATTGCCGGAGAAAGAAATGGAGGCAGCAATGGGAGTGGTGCTGCTGCTTTGTCCGCTGACGATTTCTACTTCCCATCTGATCTCATTTCGATTCAAGATCGAAAAGATGAGGCAATGCTTGTTTTAAAGGCCAATCTCATGGTTGCACTTAATAAGGAGGTTAAATCGCTTGATGAAGATAACTGGATGTTTGAAGGGCCACGGTCCCGTATCAACTTGATATCTAGACAAGGGGGTTTTCTCCAGAAGCGACTGGGAATTTCAAAGAATTGGAATTTGGCGGGACCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004137 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006213 GO:0006220 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009116 GO:0009117 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009163 GO:0009165 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034404 GO:0034641 GO:0034654 GO:0042802 GO:0042803 GO:0043094 GO:0043097 GO:0043101 GO:0043174 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046134 GO:0046483 GO:0046983 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0072527 GO:0072528 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dNK

Protein Analysis

112

Amino Acids

12.09

Weight (kDa)

8.09

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72040
fragaria_vesca	FvH4_5g32350 FvH4_5g32350
malus_domestica	MD05G1093300.v1.1 MD10G1100400.v1.1
prunus_persica	Prupe.1G551200_v2.0.a1
pyrus_communis	pycom05g09240 pycom10g08620
rosa_chinensis	RchiOBHm_Chr7g0228851
rosa_laevigata	RLG00000001541
rosa_multiflora	Rmu_sc0004517.1_g000003 Rmu_sc0011218.1_g000004 Rmu_sc0013945.1_g000008
rosa_rugosa	Rorug07G0252300
rosa_samantha	Rh7AG405600 Rh7BG384900 Rh7CG423200 Rh7DG399600
rosa_wichuraiana	Rw7G033600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	99, 326
AcsI	RAATTY	2 cut(s)	303, 319
AgsI	TTSAA	3 cut(s)	140, 239, 309
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
AoxI	GGCC	2 cut(s)	174, 242
ApeKI	GCWGC	3 cut(s)	69, 86, 89
ApoI	RAATTY	2 cut(s)	303, 319
AspS9I	GGNCC	3 cut(s)	242, 249, 329
AsuHPI	GGTGA	1 cut(s)	6
AvaII	GGWCC	2 cut(s)	249, 329
BbvI	GCAGC	3 cut(s)	73, 76, 81
BccI	CCATC	1 cut(s)	127
BceAI	ACGGC	1 cut(s)	57
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	70, 87, 90
BlsI	GCNGC	3 cut(s)	71, 88, 91
Bme18I	GGWCC	2 cut(s)	249, 329
BmgT120I	GGNCC	3 cut(s)	242, 249, 329
BmiI	GGNNCC	2 cut(s)	251, 330
BmrI	ACTGGG	1 cut(s)	308
BmuI	ACTGGG	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	245
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	233, 303
Bse3DI	GCAATG	2 cut(s)	79, 165
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	237
BseMI	GCAATG	2 cut(s)	79, 165
BseNI	ACTGG	2 cut(s)	233, 303
BseXI	GCAGC	3 cut(s)	73, 76, 81
BshFI	GGCC	2 cut(s)	176, 244
BsiSI	CCGG	2 cut(s)	17, 51
BslFI	GGGAC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	176, 244
Bsp143I	GATC	2 cut(s)	124, 142
BspACI	CCGC	2 cut(s)	99, 326
BspANI	GGCC	2 cut(s)	176, 244
BspLI	GGNNCC	2 cut(s)	251, 330
BsrDI	GCAATG	2 cut(s)	79, 165
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	233, 303
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	124, 142
Bst4CI	ACNGT	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	237
BstKTI	GATC	2 cut(s)	127, 145
BstMBI	GATC	2 cut(s)	124, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	73, 76, 81
BstXI	CCANNNNNNTGG	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	176, 244
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	3 cut(s)	242, 249, 329
CspCI	CAANNNNNGTGG	2 cut(s)	61, 96
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	3 cut(s)	9, 176, 244
CviKI_1	RGCY	3 cut(s)	9, 176, 244
DpnI	GATC	2 cut(s)	126, 144
DpnII	GATC	2 cut(s)	124, 142
DraI	TTTAAA	1 cut(s)	171
Eco32I	GATATC	2 cut(s)	33, 267
Eco47I	GGWCC	2 cut(s)	249, 329
EcoRV	GATATC	2 cut(s)	33, 267
FaeI	CATG	1 cut(s)	187
FaiI	YATR	1 cut(s)	185
FaqI	GGGAC	1 cut(s)	235
FatI	CATG	1 cut(s)	183
FauI	CCCGC	1 cut(s)	319
Fnu4HI	GCNGC	3 cut(s)	70, 87, 90
FokI	GGATG	1 cut(s)	244
Fsp4HI	GCNGC	3 cut(s)	70, 87, 90
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	3 cut(s)	70, 87, 90
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	176, 244
HapII	CCGG	2 cut(s)	17, 51
Hin1II	CATG	1 cut(s)	187
HinfI	GANTC	1 cut(s)	136
HpaII	CCGG	2 cut(s)	17, 51
HphI	GGTGA	1 cut(s)	6
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	140, 270, 289
Hpy99I	CGWCG	2 cut(s)	40, 43
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	124, 142
LpnPI	CCDG	5 cut(s)	30, 64, 214, 284, 302
Lsp1109I	GCAGC	3 cut(s)	73, 76, 81
MaeI	CTAG	1 cut(s)	270
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	2 cut(s)	126, 144
MboI	GATC	2 cut(s)	124, 142
MboII	GAAGA	2 cut(s)	18, 233
MluCI	AATT	3 cut(s)	303, 313, 319
MnlI	CCTC	3 cut(s)	59, 148, 196
MseI	TTAA	3 cut(s)	170, 195, 207
MspA1I	CMGCKG	1 cut(s)	101
MspI	CCGG	2 cut(s)	17, 51
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	124, 142
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	2 cut(s)	251, 330
NmuCI	GTSAC	1 cut(s)	12
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 41
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	3 cut(s)	71, 88, 91
PspN4I	GGNNCC	2 cut(s)	251, 330
PspPI	GGNCC	3 cut(s)	242, 249, 329
SaqAI	TTAA	3 cut(s)	170, 195, 207
SatI	GCNGC	3 cut(s)	70, 87, 90
Sau3AI	GATC	2 cut(s)	124, 142
Sau96I	GGNCC	3 cut(s)	242, 249, 329
SetI	ASST	2 cut(s)	11, 207
SinI	GGWCC	2 cut(s)	249, 329
Sse9I	AATT	3 cut(s)	303, 313, 319
SsiI	CCGC	2 cut(s)	99, 326
SspMI	CTAG	1 cut(s)	270
TaaI	ACNGT	1 cut(s)	249
TaqI	TCGA	4 cut(s)	29, 35, 134, 145
TasI	AATT	3 cut(s)	303, 313, 319
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	170, 195, 207
Tru9I	TTAA	3 cut(s)	170, 195, 207
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	3 cut(s)	69, 86, 89
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	1 cut(s)	234
VpaK11BI	GGWCC	2 cut(s)	249, 329
XapI	RAATTY	2 cut(s)	303, 319
XbaI	TCTAGA	1 cut(s)	269
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.