Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009312

Physical Location & Seq

Genomic Coordinates Reverse (-)

38573174 .. 38576437

Gene Structure 3264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0348700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGTTTTGGCTTGTTTGATTTGGAGTCCTTCTCGGCCTGGGATTTTATTTCCTCAGAAGTTGGTCGTTTGATTGCTTCCCAAGAAAAACATAGTCCCCTGAAGAGCCTATCAGCGGCTGGGTATCGCGATTTCCCAGATAGTCCTCCTTCTACATTGATGGATATGGCCGTCGATGATGACTTGTTGGTGAATTCTAAGCCGATGATGGAGGAACCACAGGTCGACTACCAAGTTTATCCGATCCCCGATACAGTCCCAGACTCCCAGGAGAACACTTTTACTGCTGTGACTGCTGTGGAGAATACAGTTGAAAGAATTTCATGGCTCAAGTCAGTTGTGGGAGACTGCATCACCAAAAATTTGTGTCCAGCAACCTCTATCAGGAAGTTTGGAAACGAATTTGGAATGCATCGATCGATGGATGATCTTGAGGATCCACATGCCAAGCACATGGAGATGGAGAAGGATTCCATGGCATTCATCACAACGAGATGTACTAAGGAGCCAGATATCATTGACAAGGCTTTCCAGCTACTTGAACTTTTGTCAACAACTCATGTTCCAGTATCTCTGGCAATAGAAATATTGGATGGTAGTATGCAAACTTGCCTAATTAAAATTGGGAATCAAGAAGGTGGGATTTGCTCAGACTTTGGGATCCGTGAGGCAGTTGCTGAAACGGCGGAATGTAATGTATTTCTCAACTATTATTACACTGTTGCTGCTGTGGGGAATACTTCACTAGAATTGTTCCCTGTGGTGCGGGAAATGGCAAGAGTCATGAACTGTGATGTCAGGACTAGTCAAAATGTTATTACTGTCTGCGGTCCGCTTGAACAAATGGATGAATTCAGCAAGTTTGTGCAATATTGCTTTGATTCGAGGCGTCAACCAACTTGTGCAATGGGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004563 GO:0005575 GO:0005623 GO:0005886 GO:0008194 GO:0015929 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0016787 GO:0016798 GO:0035251 GO:0044464 GO:0046527 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00511 ko00513 ko00520 ko00531 ko00603 ko00604 ko01100 ko04142 map00511 map00513 map00520 map00531 map00603 map00604 map01100 map04142

Pfam Domains

Protein Families

Glyco_hydro_20 Glycohydro_20b2

Protein Analysis

305

Amino Acids

34.0

Weight (kDa)

4.49

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05590 AT1G05590 AT1G05590
fragaria_vesca	FvH4_5g39620 FvH4_5g39620
prunus_persica	Prupe.2G001000_v2.0.a1
pyrus_communis	pycom02g26930 pycom07g00020
rosa_chinensis	RchiOBHm_Chr7g0241931
rosa_laevigata	RLG00000000529
rosa_multiflora	Rmu_co8432303.1_g000001 Rmu_sc0003266.1_g000015 Rmu_sc0003373.1_g000007 Rmu_sc0031877.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218470
rosa_rugosa	Rorug07G0348700
rosa_samantha	Rh7AG502800 Rh7BG474100 Rh7CG519600 Rh7DG488300 Rh7DG488400
rosa_wichuraiana	Rw7G042520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AccII	CGCG	1 cut(s)	129
AciI	CCGC	5 cut(s)	116, 686, 766, 828, 833
AclWI	GGATC	5 cut(s)	238, 431, 444, 655, 668
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	5 cut(s)	193, 318, 361, 401, 851
AcuI	CTGAAG	1 cut(s)	122
AcyI	GRCGYC	1 cut(s)	889
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	115, 384
AgsI	TTSAA	3 cut(s)	314, 542, 839
AhlI	ACTAGT	1 cut(s)	803
AjnI	CCWGG	2 cut(s)	38, 267
AluBI	AGCT	1 cut(s)	535
AluI	AGCT	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	5 cut(s)	238, 431, 444, 655, 668
AlwNI	CAGNNNCTG	2 cut(s)	119, 677
AoxI	GGCC	2 cut(s)	36, 168
ApeKI	GCWGC	1 cut(s)	725
ApoI	RAATTY	5 cut(s)	193, 318, 361, 401, 851
AspS9I	GGNCC	1 cut(s)	830
AsuHPI	GGTGA	2 cut(s)	202, 346
AvaII	GGWCC	1 cut(s)	830
BamHI	GGATCC	2 cut(s)	436, 660
BbvI	GCAGC	1 cut(s)	712
BccI	CCATC	5 cut(s)	154, 202, 415, 454, 587
BceAI	ACGGC	2 cut(s)	155, 699
BciT130I	CCWGG	2 cut(s)	40, 269
BcoDI	GTCTC	1 cut(s)	339
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	2 cut(s)	746, 804
BisI	GCNGC	2 cut(s)	117, 726
BlsI	GCNGC	2 cut(s)	118, 727
Bme1390I	CCNGG	2 cut(s)	40, 269
Bme18I	GGWCC	1 cut(s)	830
BmgT120I	GGNCC	1 cut(s)	830
BmiI	GGNNCC	4 cut(s)	216, 438, 507, 662
BmrFI	CCNGG	2 cut(s)	40, 269
BmsI	GCATC	2 cut(s)	360, 421
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuEI	CTTGAG	2 cut(s)	314, 452
Bsa29I	ATCGAT	2 cut(s)	415, 419
BsaHI	GRCGYC	1 cut(s)	889
BsaJI	CCNNGG	3 cut(s)	39, 267, 474
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 384
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	40, 269
BseCI	ATCGAT	2 cut(s)	415, 419
BseDI	CCNNGG	3 cut(s)	39, 267, 474
BseGI	GGATG	3 cut(s)	430, 598, 853
BseLI	CCNNNNNNNGG	2 cut(s)	115, 384
BseMI	GCAATG	1 cut(s)	912
BseMII	CTCAG	2 cut(s)	69, 663
BseNI	ACTGG	1 cut(s)	566
BseXI	GCAGC	1 cut(s)	712
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	2 cut(s)	38, 170
BshVI	ATCGAT	2 cut(s)	415, 419
BsiEI	CGRYCG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	81, 242
BslI	CCNNNNNNNGG	2 cut(s)	115, 384
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	81, 242
BsmI	GAATGC	2 cut(s)	414, 479
BsnI	GGCC	2 cut(s)	38, 170
Bsp143I	GATC	5 cut(s)	243, 416, 427, 436, 660
Bsp19I	CCATGG	1 cut(s)	474
Bsp68I	TCGCGA	1 cut(s)	129
BspACI	CCGC	5 cut(s)	116, 686, 766, 828, 833
BspANI	GGCC	2 cut(s)	38, 170
BspCNI	CTCAG	2 cut(s)	68, 662
BspDI	ATCGAT	2 cut(s)	415, 419
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	4 cut(s)	216, 438, 507, 662
BspPI	GGATC	5 cut(s)	238, 431, 444, 655, 668
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	3 cut(s)	39, 267, 474
BssMI	GATC	5 cut(s)	243, 416, 427, 436, 660
BssNI	GRCGYC	1 cut(s)	889
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	40, 269
Bst4CI	ACNGT	5 cut(s)	256, 310, 721, 791, 823
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	889
BstDEI	CTNAG	4 cut(s)	55, 198, 501, 649
BstDSI	CCRYGG	1 cut(s)	474
BstENI	CCTNNNNNAGG	1 cut(s)	382
BstF5I	GGATG	3 cut(s)	430, 598, 853
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	5 cut(s)	246, 419, 430, 439, 663
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	5 cut(s)	243, 416, 427, 436, 660
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 683
BstNI	CCWGG	2 cut(s)	40, 269
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	38, 267
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	712
BstX2I	RGATCY	2 cut(s)	436, 660
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	2 cut(s)	436, 660
Bsu15I	ATCGAT	2 cut(s)	415, 419
BsuRI	GGCC	2 cut(s)	38, 170
BsuTUI	ATCGAT	2 cut(s)	415, 419
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	430, 598, 853
BtsIMutI	CAGTG	1 cut(s)	717
BtuMI	TCGCGA	1 cut(s)	129
CaiI	CAGNNNCTG	2 cut(s)	119, 677
CciI	TCATGA	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	830
ClaI	ATCGAT	2 cut(s)	415, 419
CpoI	CGGWCCG	1 cut(s)	830
CseI	GACGC	1 cut(s)	878
Csp6I	GTAC	1 cut(s)	498
CspI	CGGWCCG	1 cut(s)	830
CviAII	CATG	6 cut(s)	324, 443, 454, 475, 560, 784
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	4 cut(s)	55, 198, 501, 649
DpnI	GATC	5 cut(s)	245, 418, 429, 438, 662
DpnII	GATC	5 cut(s)	243, 416, 427, 436, 660
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	474
Eco32I	GATATC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	830
Eco57I	CTGAAG	1 cut(s)	122
EcoNI	CCTNNNNNAGG	1 cut(s)	382
EcoRI	GAATTC	2 cut(s)	193, 851
EcoRII	CCWGG	2 cut(s)	38, 267
EcoRV	GATATC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	6 cut(s)	327, 446, 457, 478, 563, 787
FaiI	YATR	9 cut(s)	93, 167, 325, 444, 455, 476, 561, 602, 785
FaqI	GGGAC	2 cut(s)	81, 242
FatI	CATG	6 cut(s)	323, 442, 453, 474, 559, 783
FauI	CCCGC	1 cut(s)	759
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	2 cut(s)	117, 726
FokI	GGATG	3 cut(s)	437, 605, 860
Fsp4HI	GCNGC	2 cut(s)	117, 726
FspBI	CTAG	2 cut(s)	746, 804
GluI	GCNGC	2 cut(s)	117, 726
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	2 cut(s)	38, 170
HgaI	GACGC	1 cut(s)	878
Hin1I	GRCGYC	1 cut(s)	889
Hin1II	CATG	6 cut(s)	327, 446, 457, 478, 563, 787
HincII	GTYRAC	3 cut(s)	226, 552, 893
HindII	GTYRAC	3 cut(s)	226, 552, 893
HinfI	GANTC	6 cut(s)	26, 263, 470, 628, 780, 881
HphI	GGTGA	2 cut(s)	202, 346
Hpy166II	GTNNAC	3 cut(s)	226, 552, 893
Hpy188I	TCNGA	3 cut(s)	58, 243, 652
Hpy188III	TCNNGA	6 cut(s)	128, 385, 431, 632, 784, 799
Hpy8I	GTNNAC	3 cut(s)	226, 552, 893
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	4 cut(s)	40, 159, 460, 629
HpyCH4III	ACNGT	5 cut(s)	256, 310, 721, 791, 823
HpyCH4V	TGCA	5 cut(s)	351, 412, 604, 868, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 683
HpyF3I	CTNAG	4 cut(s)	55, 198, 501, 649
Hsp92I	GRCGYC	1 cut(s)	889
Hsp92II	CATG	6 cut(s)	327, 446, 457, 478, 563, 787
Kzo9I	GATC	5 cut(s)	243, 416, 427, 436, 660
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	712
LweI	GCATC	2 cut(s)	360, 421
MaeI	CTAG	2 cut(s)	746, 804
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	245, 418, 429, 438, 662
MboI	GATC	5 cut(s)	243, 416, 427, 436, 660
MboII	GAAGA	1 cut(s)	115
MflI	RGATCY	2 cut(s)	436, 660
MluCI	AATT	8 cut(s)	193, 318, 361, 401, 615, 621, 749, 851
MlyI	GAGTC	3 cut(s)	35, 257, 789
MnlI	CCTC	7 cut(s)	64, 156, 205, 388, 427, 661, 879
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	1 cut(s)	618
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	40, 269
Mva1269I	GAATGC	2 cut(s)	414, 479
MvaI	CCWGG	2 cut(s)	40, 269
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	293, 683
NcoI	CCATGG	1 cut(s)	474
NdeII	GATC	5 cut(s)	243, 416, 427, 436, 660
NlaIII	CATG	6 cut(s)	327, 446, 457, 478, 563, 787
NlaIV	GGNNCC	4 cut(s)	216, 438, 507, 662
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	1 cut(s)	289
NruI	TCGCGA	1 cut(s)	129
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	1 cut(s)	446
PagI	TCATGA	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	2 cut(s)	414, 479
PfeI	GAWTC	3 cut(s)	470, 628, 881
PkrI	GCNGC	2 cut(s)	118, 727
Ple19I	CGATCG	1 cut(s)	419
PleI	GAGTC	3 cut(s)	34, 257, 788
PpsI	GAGTC	3 cut(s)	34, 257, 788
Psp6I	CCWGG	2 cut(s)	38, 267
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	38, 267
PspN4I	GGNNCC	4 cut(s)	216, 438, 507, 662
PspPI	GGNCC	1 cut(s)	830
PstNI	CAGNNNCTG	2 cut(s)	119, 677
PsuI	RGATCY	2 cut(s)	436, 660
PvuI	CGATCG	1 cut(s)	419
RruI	TCGCGA	1 cut(s)	129
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	1 cut(s)	458
Rsr2I	CGGWCCG	1 cut(s)	830
RsrII	CGGWCCG	1 cut(s)	830
SalI	GTCGAC	1 cut(s)	224
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	2 cut(s)	117, 726
Sau3AI	GATC	5 cut(s)	243, 416, 427, 436, 660
Sau96I	GGNCC	1 cut(s)	830
SchI	GAGTC	3 cut(s)	35, 257, 789
ScrFI	CCNGG	2 cut(s)	40, 269
SetI	ASST	4 cut(s)	225, 380, 537, 640
SfaNI	GCATC	2 cut(s)	360, 421
SinI	GGWCC	1 cut(s)	830
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	329, 431
SmoI	CTYRAG	2 cut(s)	329, 431
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	8 cut(s)	193, 318, 361, 401, 615, 621, 749, 851
SsiI	CCGC	5 cut(s)	116, 686, 766, 828, 833
SspI	AATATT	2 cut(s)	588, 872
SspMI	CTAG	2 cut(s)	746, 804
StyD4I	CCNGG	2 cut(s)	38, 267
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	5 cut(s)	256, 310, 721, 791, 823
TaqI	TCGA	5 cut(s)	174, 225, 415, 419, 884
TasI	AATT	8 cut(s)	193, 318, 361, 401, 615, 621, 749, 851
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	119
TfiI	GAWTC	3 cut(s)	470, 628, 881
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	725
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	4 cut(s)	312, 472, 800, 864
TspGWI	ACGGA	1 cut(s)	653
TspRI	CASTG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	382
XapI	RAATTY	5 cut(s)	193, 318, 361, 401, 851
XceI	RCATGY	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	225
XspI	CTAG	2 cut(s)	746, 804
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.