Rh7DG488300

Beta-hexosaminidase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0009312
Physical Location & Seq
Forward (+)
69313627 .. 69314022
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG488300.1

Sequence Viewer

Length: 396 bp
ATGAGGGGTCTCGAGACATTGTCGCAGCTGGTGTGGGGGAATCCCTCGCTCGTGGCGGTTGGGGTGTACGTGTGGGACTCCCCACTGTTCGGGCATAGAGGGCTCATGCTCGACACCTCTAGGAACTACTACGGAGTTGAGGATTTACTTAGGACCATCGAGACCATGAGCGCCAATAAGCTCAATGTGTTTCATTGGCACATCACTGACTCCCACTCTTTCCCGCTACTCGTGCCTTCGGAGCCTGAATTGGCCTCCAAGGGGTCTTATGGATCCAGTATGCAGTACTCTCCCGCTGATGTCACAAAGATTGTGGAGTTCGGTTTGGAGCATGGTGTCAGGGTTCTCCCGGAAATCGACTCACCTGGTCAGTTTTCGATCCTTCCACCTGGTTAA

Protein Analysis

131

Amino Acids

14.49

Weight (kDa)

5.18

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_20 PF00728 30 - 124 3.5e-36 Glycosyl hydrolase family 20, catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 56, 224, 294
AclWI GGATC 3 cut(s) 267, 280, 373
AfaI GTAC 2 cut(s) 68, 287
AfiI CCNNNNNNNGG 2 cut(s) 89, 261
AflIII ACRYGT 1 cut(s) 69
AjnI CCWGG 2 cut(s) 364, 388
AluBI AGCT 2 cut(s) 28, 181
AluI AGCT 2 cut(s) 28, 181
Alw26I GTCTC 3 cut(s) 8, 14, 155
AlwI GGATC 3 cut(s) 267, 280, 373
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 173
AspS9I GGNCC 1 cut(s) 153
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 354
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 1 cut(s) 153
BamHI GGATCC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 2 cut(s) 50, 230
BbvI GCAGC 1 cut(s) 37
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 2 cut(s) 366, 390
BcnI CCSGG 1 cut(s) 350
BcoDI GTCTC 3 cut(s) 8, 14, 155
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 174
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 287
Bme1390I CCNGG 3 cut(s) 350, 366, 390
Bme18I GGWCC 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 243, 274
BmrFI CCNGG 3 cut(s) 350, 366, 390
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 70
BsaI GGTCTC 2 cut(s) 14, 155
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 261
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 2 cut(s) 366, 390
BseDI CCNNGG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 89, 261
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 2 cut(s) 89, 261
BsmAI GTCTC 3 cut(s) 8, 14, 155
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 2 cut(s) 14, 155
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 272, 378
BspACI CCGC 3 cut(s) 56, 224, 294
BspANI GGCC 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 243, 274
BspPI GGATC 3 cut(s) 267, 280, 373
BspTNI GGTCTC 2 cut(s) 14, 155
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 272, 378
BssSI CACGAG 2 cut(s) 50, 230
BssT1I CCWWGG 1 cut(s) 258
Bst2BI CACGAG 2 cut(s) 50, 230
Bst2UI CCWGG 2 cut(s) 366, 390
Bst4CI ACNGT 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 70
BstDEI CTNAG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 2 cut(s) 275, 381
BstMAI GTCTC 3 cut(s) 8, 14, 155
BstMBI GATC 2 cut(s) 272, 378
BstMWI GCNNNNNNNGC 3 cut(s) 100, 232, 241
BstNI CCWGG 2 cut(s) 366, 390
BstSCI CCNGG 3 cut(s) 348, 364, 388
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 2 cut(s) 83, 204
CfoI GCGC 1 cut(s) 173
Cfr13I GGNCC 1 cut(s) 153
CsiI ACCWGGT 2 cut(s) 364, 388
Csp6I GTAC 2 cut(s) 67, 286
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 3 cut(s) 106, 166, 332
CviJI RGCY 5 cut(s) 28, 103, 181, 244, 254
CviKI_1 RGCY 5 cut(s) 28, 103, 181, 244, 254
CviQI GTAC 2 cut(s) 67, 286
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 274, 380
DpnII GATC 2 cut(s) 272, 378
Eco130I CCWWGG 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 2 cut(s) 14, 155
Eco47I GGWCC 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 364, 388
EcoT14I CCWWGG 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 258
FaeI CATG 3 cut(s) 109, 169, 335
FaiI YATR 6 cut(s) 96, 107, 167, 270, 281, 333
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 105, 165, 331
FauI CCCGC 2 cut(s) 231, 301
Fnu4HI GCNGC 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 172
GluI GCNGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 350
HhaI GCGC 1 cut(s) 173
Hin1II CATG 3 cut(s) 109, 169, 335
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HinfI GANTC 4 cut(s) 40, 77, 209, 359
HpaII CCGG 1 cut(s) 350
HphI GGTGA 1 cut(s) 354
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 11, 13, 160
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 246, 392
HpyCH4III ACNGT 1 cut(s) 87
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 232, 241
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 3 cut(s) 109, 169, 335
HspAI GCGC 1 cut(s) 171
Kzo9I GATC 2 cut(s) 272, 378
LmnI GCTCC 2 cut(s) 241, 328
LpnPI CCDG 8 cut(s) 14, 258, 289, 325, 351, 363, 375, 378
Lsp1109I GCAGC 1 cut(s) 37
MabI ACCWGGT 2 cut(s) 364, 388
MaeI CTAG 1 cut(s) 120
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 301
MalI GATC 2 cut(s) 274, 380
MboI GATC 2 cut(s) 272, 378
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 1 cut(s) 248
MlyI GAGTC 3 cut(s) 71, 203, 353
MnlI CCTC 5 cut(s) 55, 92, 127, 133, 265
MseI TTAA 1 cut(s) 394
MspA1I CMGCKG 2 cut(s) 28, 296
MspI CCGG 1 cut(s) 350
MspR9I CCNGG 3 cut(s) 350, 366, 390
MvaI CCWGG 2 cut(s) 366, 390
MwoI GCNNNNNNNGC 3 cut(s) 100, 232, 241
NciI CCSGG 1 cut(s) 350
NdeII GATC 2 cut(s) 272, 378
NlaIII CATG 3 cut(s) 109, 169, 335
NlaIV GGNNCC 2 cut(s) 243, 274
NmuCI GTSAC 1 cut(s) 301
PaeR7I CTCGAG 1 cut(s) 11
PfeI GAWTC 1 cut(s) 40
PflFI GACNNNGTC 1 cut(s) 19
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 1 cut(s) 27
PleI GAGTC 3 cut(s) 71, 203, 353
PpsI GAGTC 3 cut(s) 71, 203, 353
Ppu21I YACGTR 1 cut(s) 70
Psp6I CCWGG 2 cut(s) 364, 388
PspGI CCWGG 2 cut(s) 364, 388
PspN4I GGNNCC 2 cut(s) 243, 274
PspPI GGNCC 1 cut(s) 153
PsuI RGATCY 1 cut(s) 272
PsyI GACNNNGTC 1 cut(s) 19
PvuII CAGCTG 1 cut(s) 28
RsaI GTAC 2 cut(s) 68, 287
RsaNI GTAC 2 cut(s) 67, 286
SaqAI TTAA 1 cut(s) 394
SatI GCNGC 1 cut(s) 26
Sau3AI GATC 2 cut(s) 272, 378
Sau96I GGNCC 1 cut(s) 153
ScaI AGTACT 1 cut(s) 287
SchI GAGTC 3 cut(s) 71, 203, 353
ScrFI CCNGG 3 cut(s) 350, 366, 390
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 30, 72, 119, 183, 367, 391
SexAI ACCWGGT 2 cut(s) 364, 388
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 248
SsiI CCGC 3 cut(s) 56, 224, 294
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 3 cut(s) 348, 364, 388
StyI CCWWGG 1 cut(s) 258
TaaI ACNGT 1 cut(s) 87
TaiI ACGT 1 cut(s) 72
TaqI TCGA 5 cut(s) 12, 111, 159, 357, 377
TasI AATT 1 cut(s) 248
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TscAI CASTG 2 cut(s) 90, 211
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 25
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 147
TspRI CASTG 2 cut(s) 90, 211
Tth111I GACNNNGTC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 153
XhoI CTCGAG 1 cut(s) 11
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.