Rh1BG168400

TMV resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0021216
Physical Location & Seq
Forward (+)
26972677 .. 26973428
752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG168400.1

Sequence Viewer

Length: 630 bp
ATGGTCAACCATTTGGGCTTGTGTAACTTGGATTCTACGCCAACCATCAAGATACGGCATCCTTGCATGTACGGTTATGATCTGTGTCCTATCCAGCACATTTCTCTTGGGAATGAGATTCCAGGCAATTTCAGCCATAAAAGTAGTGACGGATCCTCCTCAATATGTTTCACTGTGCCTTCACTTCCTAATCTCAGAATTCGAGGCTTGAACGTCTTCGTTGTCTATGCAAATTCTGAAAATGGTCCTCCTAGCGTGTTTGATGATCATTTACCTACTGCACTAATTACTAAAGTCAGAAACAAGAGCAAGGGTCGGACCTGGATCTACGGCCCGCGATCCTATGGAATTCCAGGTGCAGGAGAGGACATGATATGGTTAAGCCATTGGAGTTTTCTGGAGAACCAATTTAAAGGTGGCGATCAAGTAGATGTTTCAGTATCTATAGGACCTCAGCGTCATGTAAAGGAGTGGGGCATCAAGCTTGTAATGGAGGAGCAACAACGACACATGACAAGTAGTAGTAGTACCGTGAGGTCTTGCGGGGGATATACTTGTTCTGCTACTGGGTACCAGCTGGAAGAATGGAAGATATTGCCTTACGTAGGCCGACTTGGTTTATTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

209

Amino Acids

23.21

Weight (kDa)

8.21

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021216)

Species Orthologous Gene IDs
prunus_persica Prupe.2G127100_v2.0.a1
rosa_samantha Rh1AG202400 Rh1BG168400 Rh1CG187200 Rh1DG199100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 456
Acc65I GGTACC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 570
AccII CGCG 1 cut(s) 337
AciI CCGC 2 cut(s) 335, 543
AclWI GGATC 4 cut(s) 147, 160, 332, 333
AcsI RAATTY 3 cut(s) 198, 232, 348
AfaI GTAC 3 cut(s) 71, 529, 572
AfiI CCNNNNNNNGG 2 cut(s) 359, 605
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 3 cut(s) 121, 320, 352
AluBI AGCT 2 cut(s) 484, 577
AluI AGCT 2 cut(s) 484, 577
AlwI GGATC 4 cut(s) 147, 160, 332, 333
AoxI GGCC 2 cut(s) 331, 607
ApoI RAATTY 3 cut(s) 198, 232, 348
Asp700I GAANNNNTTC 1 cut(s) 215
Asp718I GGTACC 1 cut(s) 570
AspS9I GGNCC 4 cut(s) 245, 318, 332, 449
AvaII GGWCC 3 cut(s) 245, 318, 449
BamHI GGATCC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 208
BbvCI CCTCAGC 1 cut(s) 453
BccI CCATC 1 cut(s) 53
BceAI ACGGC 2 cut(s) 71, 346
BciT130I CCWGG 3 cut(s) 123, 322, 354
BclI TGATCA 1 cut(s) 265
BfaI CTAG 1 cut(s) 252
BfmI CTRYAG 1 cut(s) 444
Bme1390I CCNGG 3 cut(s) 123, 322, 354
Bme18I GGWCC 3 cut(s) 245, 318, 449
BmgT120I GGNCC 4 cut(s) 245, 318, 332, 449
BmiI GGNNCC 2 cut(s) 154, 572
BmrFI CCNGG 3 cut(s) 123, 322, 354
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 67, 486
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 604
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 605
Bse1I ACTGG 1 cut(s) 571
BseBI CCWGG 3 cut(s) 123, 322, 354
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 359, 605
BseMII CTCAG 2 cut(s) 208, 467
BseNI ACTGG 1 cut(s) 571
BseRI GAGGAG 2 cut(s) 148, 509
BsgI GTGCAG 2 cut(s) 264, 378
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 2 cut(s) 333, 609
BshNI GGYRCC 1 cut(s) 570
BslI CCNNNNNNNGG 2 cut(s) 359, 605
BsnI GGCC 2 cut(s) 333, 609
Bsp143I GATC 6 cut(s) 79, 152, 265, 324, 338, 421
BspACI CCGC 2 cut(s) 335, 543
BspANI GGCC 2 cut(s) 333, 609
BspCNI CTCAG 2 cut(s) 207, 466
BspFNI CGCG 1 cut(s) 337
BspLI GGNNCC 2 cut(s) 154, 572
BspPI GGATC 4 cut(s) 147, 160, 332, 333
BspT107I GGYRCC 1 cut(s) 570
BsrI ACTGG 1 cut(s) 571
BssMI GATC 6 cut(s) 79, 152, 265, 324, 338, 421
Bst2UI CCWGG 3 cut(s) 123, 322, 354
Bst4CI ACNGT 3 cut(s) 74, 175, 532
BstBAI YACGTR 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 194, 453
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 1 cut(s) 58
BstFNI CGCG 1 cut(s) 337
BstKTI GATC 6 cut(s) 82, 155, 268, 327, 341, 424
BstMBI GATC 6 cut(s) 79, 152, 265, 324, 338, 421
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 3 cut(s) 123, 322, 354
BstNSI RCATGY 1 cut(s) 70
BstSCI CCNGG 3 cut(s) 121, 320, 352
BstSFI CTRYAG 1 cut(s) 444
BstSNI TACGTA 1 cut(s) 604
BstUI CGCG 1 cut(s) 337
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 2 cut(s) 152, 324
BstYI RGATCY 2 cut(s) 152, 324
BsuRI GGCC 2 cut(s) 333, 609
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 335
Cfr13I GGNCC 4 cut(s) 245, 318, 332, 449
CseI GACGC 1 cut(s) 446
Csp6I GTAC 3 cut(s) 70, 528, 571
CviAII CATG 4 cut(s) 67, 370, 461, 511
CviJI RGCY 8 cut(s) 18, 135, 207, 333, 384, 484, 577, 609
CviKI_1 RGCY 8 cut(s) 18, 135, 207, 333, 384, 484, 577, 609
CviQI GTAC 3 cut(s) 70, 528, 571
DdeI CTNAG 2 cut(s) 194, 453
DpnI GATC 6 cut(s) 81, 154, 267, 326, 340, 423
DpnII GATC 6 cut(s) 79, 152, 265, 324, 338, 421
DraI TTTAAA 1 cut(s) 412
DrdI GACNNNNNNGTC 1 cut(s) 456
DseDI GACNNNNNNGTC 1 cut(s) 456
Eco105I TACGTA 1 cut(s) 604
Eco47I GGWCC 3 cut(s) 245, 318, 449
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoO109I RGGNCCY 1 cut(s) 449
EcoRI GAATTC 2 cut(s) 198, 348
EcoRII CCWGG 3 cut(s) 121, 320, 352
FaeI CATG 4 cut(s) 70, 373, 464, 514
FatI CATG 4 cut(s) 66, 369, 460, 510
FauI CCCGC 2 cut(s) 342, 536
FbaI TGATCA 1 cut(s) 265
FokI GGATG 1 cut(s) 45
FspBI CTAG 1 cut(s) 252
GsuI CTGGAG 1 cut(s) 419
HaeIII GGCC 2 cut(s) 333, 609
HgaI GACGC 1 cut(s) 446
Hin1II CATG 4 cut(s) 70, 373, 464, 514
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 2 cut(s) 32, 118
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 4 cut(s) 197, 238, 299, 318
Hpy188III TCNNGA 2 cut(s) 49, 398
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 189
HpyCH4III ACNGT 3 cut(s) 74, 175, 532
HpyCH4IV ACGT 2 cut(s) 213, 603
HpyCH4V TGCA 4 cut(s) 66, 230, 281, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 194, 453
HpySE526I ACGT 2 cut(s) 213, 603
Hsp92II CATG 4 cut(s) 70, 373, 464, 514
KpnI GGTACC 1 cut(s) 574
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 6 cut(s) 79, 152, 265, 324, 338, 421
LmnI GCTCC 1 cut(s) 496
LweI GCATC 2 cut(s) 67, 486
MaeI CTAG 1 cut(s) 252
MaeII ACGT 2 cut(s) 213, 603
MaeIII GTNAC 2 cut(s) 23, 146
MalI GATC 6 cut(s) 81, 154, 267, 326, 340, 423
MboI GATC 6 cut(s) 79, 152, 265, 324, 338, 421
MboII GAAGA 3 cut(s) 208, 593, 601
MflI RGATCY 2 cut(s) 152, 324
MluCI AATT 6 cut(s) 127, 198, 232, 285, 348, 407
MmeI TCCRAC 1 cut(s) 296
MnlI CCTC 8 cut(s) 166, 169, 197, 258, 358, 462, 487, 528
MroXI GAANNNNTTC 1 cut(s) 215
MseI TTAA 2 cut(s) 380, 411
MspA1I CMGCKG 1 cut(s) 577
MspR9I CCNGG 3 cut(s) 123, 322, 354
MvaI CCWGG 3 cut(s) 123, 322, 354
MvnI CGCG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 6 cut(s) 79, 152, 265, 324, 338, 421
NlaIII CATG 4 cut(s) 70, 373, 464, 514
NlaIV GGNNCC 2 cut(s) 154, 572
NmuCI GTSAC 1 cut(s) 146
NspI RCATGY 1 cut(s) 70
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 32, 118
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 3 cut(s) 121, 320, 352
PspGI CCWGG 3 cut(s) 121, 320, 352
PspN4I GGNNCC 2 cut(s) 154, 572
PspPI GGNCC 4 cut(s) 245, 318, 332, 449
PspPPI RGGWCCY 1 cut(s) 449
PsuI RGATCY 2 cut(s) 152, 324
PvuII CAGCTG 1 cut(s) 577
RsaI GTAC 3 cut(s) 71, 529, 572
RsaNI GTAC 3 cut(s) 70, 528, 571
SaqAI TTAA 2 cut(s) 380, 411
Sau3AI GATC 6 cut(s) 79, 152, 265, 324, 338, 421
Sau96I GGNCC 4 cut(s) 245, 318, 332, 449
ScrFI CCNGG 3 cut(s) 123, 322, 354
SfaNI GCATC 2 cut(s) 67, 486
SfcI CTRYAG 1 cut(s) 444
SinI GGWCC 3 cut(s) 245, 318, 449
SnaBI TACGTA 1 cut(s) 604
Sse9I AATT 6 cut(s) 127, 198, 232, 285, 348, 407
SsiI CCGC 2 cut(s) 335, 543
SspMI CTAG 1 cut(s) 252
StyD4I CCNGG 3 cut(s) 121, 320, 352
TaaI ACNGT 3 cut(s) 74, 175, 532
TaiI ACGT 2 cut(s) 216, 606
TaqI TCGA 1 cut(s) 202
TasI AATT 6 cut(s) 127, 198, 232, 285, 348, 407
TfiI GAWTC 2 cut(s) 32, 118
Tru1I TTAA 2 cut(s) 380, 411
Tru9I TTAA 2 cut(s) 380, 411
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 146
Tsp45I GTSAC 1 cut(s) 146
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 1 cut(s) 178
VpaK11BI GGWCC 3 cut(s) 245, 318, 449
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 3 cut(s) 198, 232, 348
XceI RCATGY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.