Rh1CG187200

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0021216
Physical Location & Seq
Forward (+)
40864536 .. 40877099
12564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG187200.1

Sequence Viewer

Length: 492 bp
ATGAAAAGGGGCAGCACATTTCTTCTTGGGAATGAGATTCCAAGCAATTTCAGCCATAAAAGTAGTGACGGATCCTCCTCAATATGTTTCACTGTGCCTTCACTTCCTAATCTCAGAATTCGAGGCTTGAACTTCTTCGTTGTCTATGCAAATTCTGAAAATGGTCCTCCTAGCGTGTTTGATGATCATTTACCTACTGCACTAATTACTAAAGTCAGAAACAAGAGCAAGGGTCGGACCTGGATCTACGGCCCGCGATCCTATGGAATTCCAGGTGCAGGAGAGGACATGATATGGTTAAGCCGTTGGAGTTTTCTGGAGAACCAATTCAAAGGTGGCGATCAAGTAGATGTTTCAGTATCTATAGAACCTCAGCGTCATGTAAAGGAGTGGGGCATCAAGCTTGTAATGGAGGAGCAACAACGACACATGACAAGTAGTAGTAGTACCAGTGAGGATCCTTGTGATGGAGATATATATGTCAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

6.9

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021216)

Species Orthologous Gene IDs
prunus_persica Prupe.2G127100_v2.0.a1
rosa_samantha Rh1AG202400 Rh1BG168400 Rh1CG187200 Rh1DG199100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 256
AciI CCGC 1 cut(s) 254
AclWI GGATC 6 cut(s) 66, 79, 251, 252, 452, 465
AcsI RAATTY 3 cut(s) 117, 151, 267
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 278, 467
AgsI TTSAA 2 cut(s) 130, 331
AjiI CACGTC 1 cut(s) 489
AjnI CCWGG 2 cut(s) 239, 271
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
AlwI GGATC 6 cut(s) 66, 79, 251, 252, 452, 465
AoxI GGCC 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 12
ApoI RAATTY 3 cut(s) 117, 151, 267
Asp700I GAANNNNTTC 2 cut(s) 134, 326
AspS9I GGNCC 3 cut(s) 164, 237, 251
AvaII GGWCC 2 cut(s) 164, 237
BamHI GGATCC 2 cut(s) 71, 457
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 461
BceAI ACGGC 2 cut(s) 265, 288
BciT130I CCWGG 2 cut(s) 241, 273
BclI TGATCA 1 cut(s) 184
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 241, 273
Bme18I GGWCC 2 cut(s) 164, 237
BmgBI CACGTC 1 cut(s) 489
BmgT120I GGNCC 3 cut(s) 164, 237, 251
BmiI GGNNCC 2 cut(s) 73, 459
BmrFI CCNGG 2 cut(s) 241, 273
BmsI GCATC 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 372
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 467
Bse1I ACTGG 1 cut(s) 450
BseBI CCWGG 2 cut(s) 241, 273
BseLI CCNNNNNNNGG 2 cut(s) 278, 467
BseMII CTCAG 2 cut(s) 127, 386
BseNI ACTGG 1 cut(s) 450
BseRI GAGGAG 2 cut(s) 67, 428
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 2 cut(s) 183, 297
Bsh1236I CGCG 1 cut(s) 256
BshFI GGCC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 278, 467
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 6 cut(s) 71, 184, 243, 257, 340, 457
BspACI CCGC 1 cut(s) 254
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 2 cut(s) 126, 385
BspFNI CGCG 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 73, 459
BspPI GGATC 6 cut(s) 66, 79, 251, 252, 452, 465
BsrI ACTGG 1 cut(s) 450
BssMI GATC 6 cut(s) 71, 184, 243, 257, 340, 457
Bst2UI CCWGG 2 cut(s) 241, 273
Bst4CI ACNGT 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 2 cut(s) 113, 372
BstFNI CGCG 1 cut(s) 256
BstKTI GATC 6 cut(s) 74, 187, 246, 260, 343, 460
BstMBI GATC 6 cut(s) 71, 184, 243, 257, 340, 457
BstMWI GCNNNNNNNGC 1 cut(s) 51
BstNI CCWGG 2 cut(s) 241, 273
BstSCI CCNGG 2 cut(s) 239, 271
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 24
BstX2I RGATCY 3 cut(s) 71, 243, 457
BstYI RGATCY 3 cut(s) 71, 243, 457
BsuRI GGCC 1 cut(s) 252
BtrI CACGTC 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 90, 457
Cac8I GCNNGC 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 164, 237, 251
CseI GACGC 1 cut(s) 365
Csp6I GTAC 1 cut(s) 447
CviAII CATG 3 cut(s) 289, 380, 430
CviJI RGCY 5 cut(s) 54, 126, 252, 303, 403
CviKI_1 RGCY 5 cut(s) 54, 126, 252, 303, 403
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 2 cut(s) 113, 372
DpnI GATC 6 cut(s) 73, 186, 245, 259, 342, 459
DpnII GATC 6 cut(s) 71, 184, 243, 257, 340, 457
Eco47I GGWCC 2 cut(s) 164, 237
EcoRI GAATTC 2 cut(s) 117, 267
EcoRII CCWGG 2 cut(s) 239, 271
FaeI CATG 3 cut(s) 292, 383, 433
FatI CATG 3 cut(s) 288, 379, 429
FauI CCCGC 1 cut(s) 261
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 1 cut(s) 171
GluI GCNGC 1 cut(s) 13
GsuI CTGGAG 1 cut(s) 338
HaeIII GGCC 1 cut(s) 252
HgaI GACGC 1 cut(s) 365
Hin1II CATG 3 cut(s) 292, 383, 433
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 116, 157, 218, 237
Hpy188III TCNNGA 2 cut(s) 317, 484
HpyAV CCTTC 1 cut(s) 108
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 149, 200, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 51
HpyF3I CTNAG 2 cut(s) 113, 372
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 3 cut(s) 292, 383, 433
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 6 cut(s) 71, 184, 243, 257, 340, 457
LmnI GCTCC 1 cut(s) 415
LpnPI CCDG 7 cut(s) 226, 253, 258, 264, 285, 302, 463
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 171
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 1 cut(s) 65
MalI GATC 6 cut(s) 73, 186, 245, 259, 342, 459
MboI GATC 6 cut(s) 71, 184, 243, 257, 340, 457
MboII GAAGA 2 cut(s) 14, 127
MflI RGATCY 3 cut(s) 71, 243, 457
MluCI AATT 6 cut(s) 46, 117, 151, 204, 267, 326
MmeI TCCRAC 2 cut(s) 215, 287
MnlI CCTC 8 cut(s) 85, 88, 116, 177, 277, 381, 406, 448
MroXI GAANNNNTTC 2 cut(s) 134, 326
MseI TTAA 1 cut(s) 299
MspR9I CCNGG 2 cut(s) 241, 273
MvaI CCWGG 2 cut(s) 241, 273
MvnI CGCG 1 cut(s) 256
MwoI GCNNNNNNNGC 1 cut(s) 51
NdeII GATC 6 cut(s) 71, 184, 243, 257, 340, 457
NlaIII CATG 3 cut(s) 292, 383, 433
NlaIV GGNNCC 2 cut(s) 73, 459
NmuCI GTSAC 1 cut(s) 65
PdmI GAANNNNTTC 2 cut(s) 134, 326
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 14
Psp6I CCWGG 2 cut(s) 239, 271
PspGI CCWGG 2 cut(s) 239, 271
PspN4I GGNNCC 2 cut(s) 73, 459
PspPI GGNCC 3 cut(s) 164, 237, 251
PsuI RGATCY 3 cut(s) 71, 243, 457
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 6 cut(s) 71, 184, 243, 257, 340, 457
Sau96I GGNCC 3 cut(s) 164, 237, 251
ScrFI CCNGG 2 cut(s) 241, 273
SetI ASST 7 cut(s) 196, 242, 277, 337, 373, 405, 491
SfaNI GCATC 1 cut(s) 405
SfcI CTRYAG 1 cut(s) 363
SinI GGWCC 2 cut(s) 164, 237
Sse9I AATT 6 cut(s) 46, 117, 151, 204, 267, 326
SsiI CCGC 1 cut(s) 254
SspMI CTAG 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 239, 271
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 121
TasI AATT 6 cut(s) 46, 117, 151, 204, 267, 326
TfiI GAWTC 1 cut(s) 37
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 2 cut(s) 97, 457
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 1 cut(s) 12
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 2 cut(s) 97, 457
VpaK11BI GGWCC 2 cut(s) 164, 237
XapI RAATTY 3 cut(s) 117, 151, 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
XmnI GAANNNNTTC 2 cut(s) 134, 326
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.