Rh1BG385700

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0018084
Physical Location & Seq
Forward (+)
51360936 .. 51361217
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG385700.1

Sequence Viewer

Length: 282 bp
ATGTGTAGCTTGGAGCTCCTGGAATTGTCTCTCGGTGTCAAACAAAGATTTACTGATATTGCAGATGTTGCTATCTCTGCAATCCAAACCCTCAGGGTATTGAACCTGGATGGTCGCTGGGACGTGTCAAACCGTACCATATTTGCTCTTGGTGAAAATTTTCGCAACTTAAGAAAGATACGATTCAAGGGTTTTTCTCGTGTAAACGTAACCTGGGATGCCCTTTCTGCCATTCAAGGTCCATACTTGACATCCATTGATCTTGAGGGTGGTGATACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

93

Amino Acids

10.43

Weight (kDa)

6.17

Isoelectric Point (pI)

16.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018084)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30123 FvH4_7g30140 FvH4_7g30140
rosa_laevigata RLG00000026466
rosa_multiflora Rmu_sc0000625.1_g000008
rosa_roxburghii Rroxscaffold_4G00280720
rosa_rugosa Rorug01G0406600
rosa_samantha Rh1BG385600 Rh1BG385700 Rh1DG416800 Rh1DG417000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 1 cut(s) 136
AflII CTTAAG 1 cut(s) 169
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 3 cut(s) 103, 187, 236
AjiI CACGTC 1 cut(s) 124
AjnI CCWGG 3 cut(s) 18, 105, 212
AluBI AGCT 2 cut(s) 9, 16
AluI AGCT 2 cut(s) 9, 16
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 157
Asp700I GAANNNNTTC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 239
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 1 cut(s) 104
BciT130I CCWGG 3 cut(s) 20, 107, 214
BcoDI GTCTC 1 cut(s) 33
BfrI CTTAAG 1 cut(s) 169
Bme1390I CCNGG 3 cut(s) 20, 107, 214
Bme18I GGWCC 1 cut(s) 239
BmgBI CACGTC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 3 cut(s) 20, 107, 214
BmsI GCATC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 92
BseBI CCWGG 3 cut(s) 20, 107, 214
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 3 cut(s) 115, 223, 251
BseMII CTCAG 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 18
BslFI GGGAC 1 cut(s) 134
BsmAI GTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 1 cut(s) 259
BssSI CACGAG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 20, 107, 214
Bst4CI ACNGT 1 cut(s) 134
BstAFI CTTAAG 1 cut(s) 169
BstAPI GCANNNNNTGC 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 3 cut(s) 115, 223, 251
BstKTI GATC 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 1 cut(s) 259
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 227
BstNI CCWGG 3 cut(s) 20, 107, 214
BstSCI CCNGG 3 cut(s) 18, 105, 212
Bsu36I CCTNAGG 1 cut(s) 92
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 3 cut(s) 115, 223, 251
Cfr13I GGNCC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 135
CviJI RGCY 2 cut(s) 9, 16
CviKI_1 RGCY 2 cut(s) 9, 16
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 261
DpnII GATC 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 16
Eco81I CCTNAGG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 16
EcoRII CCWGG 3 cut(s) 18, 105, 212
EcoT38I GRGCYC 1 cut(s) 18
FaiI YATR 2 cut(s) 140, 244
FaqI GGGAC 1 cut(s) 134
FokI GGATG 3 cut(s) 122, 230, 238
FriOI GRGCYC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 121
HinfI GANTC 1 cut(s) 183
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 123, 207
HpyCH4V TGCA 2 cut(s) 62, 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 227
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 2 cut(s) 123, 207
Kzo9I GATC 1 cut(s) 259
LmnI GCTCC 2 cut(s) 13, 21
LpnPI CCDG 8 cut(s) 5, 32, 79, 92, 103, 119, 199, 226
LweI GCATC 1 cut(s) 208
MaeII ACGT 2 cut(s) 123, 207
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 261
MboI GATC 1 cut(s) 259
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 2 cut(s) 23, 157
MnlI CCTC 2 cut(s) 101, 259
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 2 cut(s) 170, 280
MspCI CTTAAG 1 cut(s) 169
MspR9I CCNGG 3 cut(s) 20, 107, 214
MvaI CCWGG 3 cut(s) 20, 107, 214
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 227
NdeII GATC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 183
PfoI TCCNGGA 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 18, 105, 212
PspFI CCCAGC 1 cut(s) 117
PspGI CCWGG 3 cut(s) 18, 105, 212
PspPI GGNCC 1 cut(s) 239
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 170, 280
Sau3AI GATC 1 cut(s) 259
Sau96I GGNCC 1 cut(s) 239
ScrFI CCNGG 3 cut(s) 20, 107, 214
SduI GDGCHC 1 cut(s) 18
SetI ASST 7 cut(s) 11, 18, 108, 126, 210, 215, 241
SfaNI GCATC 1 cut(s) 208
SinI GGWCC 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 169, 263
SmoI CTYRAG 2 cut(s) 169, 263
Sse9I AATT 2 cut(s) 23, 157
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 18, 105, 212
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 126, 210
TasI AATT 2 cut(s) 23, 157
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 2 cut(s) 170, 280
Tru9I TTAA 2 cut(s) 170, 280
Vha464I CTTAAG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.