Rh1DG416800

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0018084
Physical Location & Seq
Forward (+)
63268215 .. 63268766
552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG416800.1

Sequence Viewer

Length: 552 bp
ATGGCTTTACAGACCCAAGAATCAGGGAAAATTACACTGCTGAATGACGATTTACTTGGCCTAATCTTAACAAGGATTAAAGCTAAAGGTGACAGAAAATCGTGCTCTGAGGTTTGCAAGCAATGGTTGAGAGTTGAAGGACTGAGGCGTTCATCACTTGTGGTTCTTCAACGACACGATTTCCGTATTAGTGCACTCACTAGGTTCCCGAATTTCACTAAATTCGAAACATGGAAGCCTATGACCGACACCGACCTTGAGTTCTTGGCCAAAACATGTCCGCAACTTAAGATCACCAAGTTCAATTGGCGTCAGGAAGATGGTGATGGTGGTGTTGTGAGTGAAAAAGGTCTAAGGGCTTTGGGAAATGGGTGTCCTAAACTGGCTGGGGTTTTGGTTTCCGGGGAAGGAAGGGTAGGGGATTCTGGAGTTGGTGTGCTTGTACATTTTGCTGCTAACTTGAAGTGTTTGTGTTTGCGGGGTAATAGCCTGATTTCGGACGAAGCCTTGAAGCAGTTGGGTCTGCATCTTCATGTTCGATTGCTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

183

Amino Acids

20.29

Weight (kDa)

9.38

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 15 - 51 9.6e-07 F-box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018084)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30123 FvH4_7g30140 FvH4_7g30140
rosa_laevigata RLG00000026466
rosa_multiflora Rmu_sc0000625.1_g000008
rosa_roxburghii Rroxscaffold_4G00280720
rosa_rugosa Rorug01G0406600
rosa_samantha Rh1BG385600 Rh1BG385700 Rh1DG416800 Rh1DG417000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 281, 478
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 211, 221
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 1 cut(s) 496
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 275
AgsI TTSAA 5 cut(s) 137, 170, 304, 463, 511
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 2 cut(s) 107, 196
Alw44I GTGCAC 1 cut(s) 192
AoxI GGCC 2 cut(s) 58, 267
ApaLI GTGCAC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 452
ApoI RAATTY 2 cut(s) 211, 221
AsuC2I CCSGG 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 101, 286, 335
AsuII TTCGAA 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 107, 196
BbvI GCAGC 1 cut(s) 439
BccI CCATC 2 cut(s) 314, 320
BcnI CCSGG 1 cut(s) 403
BfaI CTAG 1 cut(s) 201
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 453
BlsI GCNGC 1 cut(s) 454
Bme1390I CCNGG 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 206
BmrFI CCNGG 1 cut(s) 403
BmsI GCATC 1 cut(s) 535
BpmI CTGGAG 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 403
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 420, 450
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 402
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 2 cut(s) 99, 134
BseNI ACTGG 1 cut(s) 387
BseSI GKGCMC 1 cut(s) 196
BseXI GCAGC 1 cut(s) 439
BseYI CCCAGC 1 cut(s) 386
BshFI GGCC 2 cut(s) 60, 269
BsiHKAI GWGCWC 2 cut(s) 107, 196
BsiSI CCGG 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 496
BsnI GGCC 2 cut(s) 60, 269
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 107, 196
Bsp1407I TGTACA 1 cut(s) 442
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 2 cut(s) 281, 478
BspANI GGCC 2 cut(s) 60, 269
BspCNI CTCAG 2 cut(s) 100, 135
BspLI GGNNCC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 287
BsrDI GCAATG 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 442
BsrI ACTGG 1 cut(s) 387
BssECI CCNNGG 1 cut(s) 402
BssMI GATC 1 cut(s) 291
BssNI GRCGYC 1 cut(s) 310
BstACI GRCGYC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 287
BstAUI TGTACA 1 cut(s) 442
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 3 cut(s) 108, 143, 353
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 401
BstSLI GKGCMC 1 cut(s) 196
BstV1I GCAGC 1 cut(s) 439
BsuRI GGCC 2 cut(s) 60, 269
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 119
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 443
CviAII CATG 3 cut(s) 231, 276, 533
CviJI RGCY 9 cut(s) 5, 60, 83, 238, 269, 359, 386, 489, 506
CviKI_1 RGCY 9 cut(s) 5, 60, 83, 238, 269, 359, 386, 489, 506
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 3 cut(s) 108, 143, 353
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 267
FaeI CATG 3 cut(s) 234, 279, 536
FaiI YATR 4 cut(s) 232, 242, 277, 534
FatI CATG 3 cut(s) 230, 275, 532
FauI CCCGC 1 cut(s) 471
Fnu4HI GCNGC 1 cut(s) 453
Fsp4HI GCNGC 1 cut(s) 453
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 453
GsaI CCCAGC 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 447
HaeIII GGCC 2 cut(s) 60, 269
HapII CCGG 1 cut(s) 402
HgaI GACGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 3 cut(s) 234, 279, 536
HinfI GANTC 2 cut(s) 20, 422
HpaII CCGG 1 cut(s) 402
HphI GGTGA 3 cut(s) 101, 286, 335
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 109, 499
Hpy188III TCNNGA 3 cut(s) 208, 314, 426
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 3 cut(s) 131, 401, 405
HpyCH4V TGCA 3 cut(s) 117, 194, 526
HpyF3I CTNAG 3 cut(s) 108, 143, 353
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 3 cut(s) 234, 279, 536
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 7 cut(s) 9, 299, 368, 372, 411, 415, 503
Lsp1109I GCAGC 1 cut(s) 439
LweI GCATC 1 cut(s) 535
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 89
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 3 cut(s) 158, 329, 521
MfeI CAATTG 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 107, 196
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 4 cut(s) 30, 211, 221, 304
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 2 cut(s) 103, 138
Mox20I TGGCCA 1 cut(s) 269
MscI TGGCCA 1 cut(s) 269
MseI TTAA 3 cut(s) 68, 78, 288
MslI CAYNNNNRTG 1 cut(s) 531
Msp20I TGGCCA 1 cut(s) 269
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 1 cut(s) 403
MunI CAATTG 1 cut(s) 304
NciI CCSGG 1 cut(s) 403
NdeII GATC 1 cut(s) 291
NlaIII CATG 3 cut(s) 234, 279, 536
NlaIV GGNNCC 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 279
NspV TTCGAA 1 cut(s) 225
PciI ACATGT 1 cut(s) 275
PfeI GAWTC 2 cut(s) 20, 422
PkrI GCNGC 1 cut(s) 454
PscI ACATGT 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 386
PspN4I GGNNCC 1 cut(s) 206
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 531
SaqAI TTAA 3 cut(s) 68, 78, 288
SatI GCNGC 1 cut(s) 453
Sau3AI GATC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 403
SduI GDGCHC 2 cut(s) 107, 196
SetI ASST 6 cut(s) 85, 91, 114, 206, 258, 352
SfaNI GCATC 1 cut(s) 535
SfuI TTCGAA 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 257, 287
SmoI CTYRAG 2 cut(s) 257, 287
Sse9I AATT 4 cut(s) 30, 211, 221, 304
SsiI CCGC 2 cut(s) 281, 478
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 401
TaqI TCGA 2 cut(s) 225, 538
TaqII GACCGA 1 cut(s) 260
TasI AATT 4 cut(s) 30, 211, 221, 304
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 2 cut(s) 20, 422
Tru1I TTAA 3 cut(s) 68, 78, 288
Tru9I TTAA 3 cut(s) 68, 78, 288
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 89
TseI GCWGC 1 cut(s) 452
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 141, 521
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 1 cut(s) 42
Vha464I CTTAAG 1 cut(s) 287
VneI GTGCAC 1 cut(s) 192
XapI RAATTY 2 cut(s) 211, 221
XceI RCATGY 1 cut(s) 279
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.