Rh1CG009100

eukaryotic translation initiation factor isoform

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020266
Physical Location & Seq
Reverse (-)
1350467 .. 1370249
19783 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG009100.1

Sequence Viewer

Length: 468 bp
ATGAATGGAGGGACGTGGTGGGCAGATGAAGCATTACTGTGTGTGGAGGAGCTAAGATCTCCAGCTTACCACCCTGAGGTTGTCAAAGAAGCTATCTCCCTTGCGCTGGAGAAAAGTACATCCTGTGTTGAACCACTTTTTAAGCTTCTCGAGCATTTGTTCTCTAAGAAGGTCATTACAGCGAGTGACATAAGGAGTGGATGTTTGCTCTATGCGTCTTTGCTGAGTGATATCGGCATTGATTATCCTAAAGCACCGAGTTATTTTGGTGAAGTTATGGGAAAATTAATTTTAGTTGGAGCTTTGGATTTTAAGGTGGTGGAAGACGTTTTGAAGGAGGTGGATGACGACTACTATCAGAAAGCCATATTCAATGCAGGACTGCAGGTTATTAGTTCTAGCCCTTCCGGGCAAGCTGTGCTGGATTCACAAGCATCTGATATTGAGGCCTGCCGGAGTCTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05416 map03013 map05416
Pfam Domains
Protein Families
MA3 MIF4G

Protein Analysis

155

Amino Acids

16.95

Weight (kDa)

4.55

Isoelectric Point (pI)

42.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MA3 PF02847 9 - 103 7.5e-22 MA3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020266)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G30680
pyrus_communis pycom15g13490
rosa_chinensis RchiOBHm_Chr5g0028791
rosa_samantha Rh1BG001500 Rh1CG009100 Rh2DG419500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 376
AfaI GTAC 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 76, 106
AgsI TTSAA 3 cut(s) 131, 334, 373
AjiI CACGTC 1 cut(s) 15
AluBI AGCT 6 cut(s) 52, 65, 92, 145, 302, 416
AluI AGCT 6 cut(s) 52, 65, 92, 145, 302, 416
Ama87I CYCGRG 1 cut(s) 149
AoxI GGCC 1 cut(s) 447
AseI ATTAAT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 149
AxyI CCTNAGG 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 330
BcnI CCSGG 1 cut(s) 409
BfaI CTAG 2 cut(s) 399, 466
BfmI CTRYAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 376
BglII AGATCT 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 409
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 330
BpmI CTGGAG 2 cut(s) 45, 128
BpuMI CCSGG 1 cut(s) 409
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 106
Bse21I CCTNAGG 1 cut(s) 75
BseGI GGATG 3 cut(s) 119, 206, 349
BseLI CCNNNNNNNGG 2 cut(s) 76, 106
BseMII CTCAG 2 cut(s) 66, 215
BseRI GAGGAG 1 cut(s) 62
BshFI GGCC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 2 cut(s) 408, 454
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 76, 106
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 449
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 56
BspANI GGCC 1 cut(s) 449
BspCNI CTCAG 2 cut(s) 67, 216
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 376
BssMI GATC 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 414, 451
BstDEI CTNAG 4 cut(s) 53, 75, 165, 224
BstF5I GGATG 3 cut(s) 119, 206, 349
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 59
BstMBI GATC 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 29, 151, 418
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
Bsu36I CCTNAGG 1 cut(s) 75
BsuRI GGCC 1 cut(s) 449
BtrI CACGTC 1 cut(s) 15
BtsCI GGATG 3 cut(s) 119, 206, 349
BveI ACCTGC 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 414, 451
CfoI GCGC 1 cut(s) 106
CseI GACGC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 9 cut(s) 52, 65, 92, 145, 302, 365, 402, 416, 449
CviKI_1 RGCY 9 cut(s) 52, 65, 92, 145, 302, 365, 402, 416, 449
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 4 cut(s) 53, 75, 165, 224
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 449
Eco32I GATATC 1 cut(s) 232
Eco81I CCTNAGG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 149
EcoRV GATATC 1 cut(s) 232
FaiI YATR 4 cut(s) 191, 213, 278, 368
FaqI GGGAC 1 cut(s) 25
FokI GGATG 3 cut(s) 106, 213, 356
FspBI CTAG 2 cut(s) 399, 466
GlaI GCGC 1 cut(s) 105
GsuI CTGGAG 2 cut(s) 45, 128
HaeIII GGCC 1 cut(s) 449
HapII CCGG 2 cut(s) 408, 454
HgaI GACGC 1 cut(s) 204
HhaI GCGC 1 cut(s) 106
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 2 cut(s) 425, 457
HpaII CCGG 2 cut(s) 408, 454
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 2 cut(s) 360, 439
Hpy188III TCNNGA 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 163, 328, 414
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 2 cut(s) 14, 327
HpyCH4V TGCA 2 cut(s) 377, 385
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 151, 418
HpyF3I CTNAG 4 cut(s) 53, 75, 165, 224
HpySE526I ACGT 2 cut(s) 14, 327
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 56
LmnI GCTCC 2 cut(s) 49, 299
LpnPI CCDG 9 cut(s) 75, 87, 92, 136, 363, 371, 407, 421, 463
LweI GCATC 1 cut(s) 443
MaeI CTAG 2 cut(s) 399, 466
MaeII ACGT 2 cut(s) 14, 327
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MboII GAAGA 1 cut(s) 335
MflI RGATCY 1 cut(s) 56
MluCI AATT 2 cut(s) 284, 288
MlyI GAGTC 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 4 cut(s) 40, 70, 331, 439
MseI TTAA 3 cut(s) 141, 287, 312
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 2 cut(s) 408, 454
MspR9I CCNGG 1 cut(s) 409
MwoI GCNNNNNNNGC 3 cut(s) 29, 151, 418
NciI CCSGG 1 cut(s) 409
NdeII GATC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 149
PceI AGGCCT 1 cut(s) 449
PfeI GAWTC 1 cut(s) 425
PleI GAGTC 1 cut(s) 465
PpsI GAGTC 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 287
PstI CTGCAG 1 cut(s) 387
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 37
SaqAI TTAA 3 cut(s) 141, 287, 312
Sau3AI GATC 1 cut(s) 56
SchI GAGTC 1 cut(s) 466
ScrFI CCNGG 1 cut(s) 409
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 383
Sfr274I CTCGAG 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 284, 288
SseBI AGGCCT 1 cut(s) 449
SspMI CTAG 2 cut(s) 399, 466
StuI AGGCCT 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 2 cut(s) 17, 330
TaqI TCGA 1 cut(s) 150
TasI AATT 2 cut(s) 284, 288
TatI WGTACW 1 cut(s) 116
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 141, 287, 312
Tru9I TTAA 3 cut(s) 141, 287, 312
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 17, 42
VspI ATTAAT 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 2 cut(s) 399, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.