Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0018273

Physical Location & Seq

Genomic Coordinates Reverse (-)

49839673 .. 49839951

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG277200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCAGATTGTTGTGAGACATCAGAATGGGGGGAGATCAATCATTCTTTATGTTGAGAGGTCTGATACCATTCGTGATGTTAAGGCTAAAATCCAAGAGAGAGTGGGTGTCCCACCAAGTAGACAGAGGCTTATCTTTGCTGGGAGGCAACTGGAGGGTGGGAGCACTCTGGCTGATTGTAGCATCCAGAATGAGTCTAATCTCGACCGGCTTTCTGCTTCCTCTTCGGGGAATGTGTATCTTTGTCATACATCTCGGTGGGAAGATAACCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000902 GO:0002165 GO:0003006 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005700 GO:0005704 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006810 GO:0006914 GO:0006928 GO:0006950 GO:0006974 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007127 GO:0007140 GO:0007141 GO:0007143 GO:0007144 GO:0007275 GO:0007276 GO:0007292 GO:0007399 GO:0007417 GO:0007420 GO:0007548 GO:0007552 GO:0008150 GO:0008152 GO:0008219 GO:0008406 GO:0008584 GO:0008585 GO:0009056 GO:0009057 GO:0009653 GO:0009791 GO:0009886 GO:0009888 GO:0009894 GO:0009966 GO:0009967 GO:0009987 GO:0010623 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010970 GO:0012501 GO:0016043 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0019953 GO:0021536 GO:0021761 GO:0021854 GO:0021872 GO:0021879 GO:0021884 GO:0021886 GO:0021888 GO:0021953 GO:0021954 GO:0021979 GO:0022008 GO:0022402 GO:0022412 GO:0022414 GO:0023051 GO:0023056 GO:0030030 GO:0030154 GO:0030162 GO:0030163 GO:0030182 GO:0030705 GO:0030900 GO:0031175 GO:0031323 GO:0031329 GO:0031386 GO:0031974 GO:0031981 GO:0032268 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0033554 GO:0034641 GO:0034643 GO:0035069 GO:0035096 GO:0035295 GO:0036211 GO:0036477 GO:0042176 GO:0042391 GO:0042592 GO:0042981 GO:0042995 GO:0043005 GO:0043025 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043209 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044297 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045137 GO:0046483 GO:0046545 GO:0046546 GO:0046660 GO:0046661 GO:0046907 GO:0047497 GO:0048232 GO:0048285 GO:0048468 GO:0048513 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048609 GO:0048666 GO:0048699 GO:0048707 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048871 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051234 GO:0051246 GO:0051321 GO:0051603 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0051704 GO:0051716 GO:0051881 GO:0060033 GO:0060255 GO:0060322 GO:0060612 GO:0060613 GO:0061136 GO:0061448 GO:0061458 GO:0061919 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0072384 GO:0072520 GO:0080090 GO:0090304 GO:0097009 GO:0097458 GO:0098687 GO:0099111 GO:0120025 GO:0120036 GO:0120039 GO:0140013 GO:1901214 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1901796 GO:1901798 GO:1902253 GO:1902255 GO:1902531 GO:1902533 GO:1903046 GO:1903050 GO:1903362 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko03320 ko04137 ko04144 ko05012 ko05167 map03320 map04137 map04144 map05012 map05167

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

92

Amino Acids

10.31

Weight (kDa)

8.8

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 69	8.2e-11	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	4 - 68	1.6e-19	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0018273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11970
prunus_persica	Prupe.4G204200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0359151
rosa_multiflora	Rmu_sc0010589.1_g000003 Rmu_ssc0000135.1_g000004
rosa_rugosa	Rorug03G0165600
rosa_samantha	Rh1AG281700 Rh1CG266100 Rh1DG277200
rosa_wichuraiana	Rw1G025040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	228
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	140
Bsh1285I	CGRYCG	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	35
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	156
BssAI	RCCGGY	1 cut(s)	207
BssMI	GATC	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	38
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	35
BstMCI	CGRYCG	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	183
Cfr10I	RCCGGY	1 cut(s)	207
CviJI	RGCY	4 cut(s)	86, 130, 173, 211
CviKI_1	RGCY	4 cut(s)	86, 130, 173, 211
DpnI	GATC	1 cut(s)	37
DpnII	GATC	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
FaiI	YATR	2 cut(s)	51, 249
FaqI	GGGAC	1 cut(s)	95
FblI	GTMKAC	1 cut(s)	121
FokI	GGATG	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	173
HapII	CCGG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	194
HpaII	CCGG	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	24, 64
Hpy188III	TCNNGA	4 cut(s)	74, 187, 203, 276
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	126, 137, 155, 200, 221
LweI	GCATC	1 cut(s)	192
MalI	GATC	1 cut(s)	37
MboI	GATC	1 cut(s)	35
MboII	GAAGA	2 cut(s)	216, 275
MhlI	GDGCHC	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	5 cut(s)	51, 120, 138, 148, 232
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	2 cut(s)	24, 256
MspI	CCGG	1 cut(s)	208
NdeII	GATC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	140
RseI	CAYNNNNRTG	2 cut(s)	24, 256
SaqAI	TTAA	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	1 cut(s)	62
SfaNI	GCATC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	24, 256
TaqI	TCGA	1 cut(s)	204
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
XmiI	GTMKAC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.