Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010017

Physical Location & Seq

Genomic Coordinates Reverse (-)

52952289 .. 52955941

Gene Structure 3653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG302800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1887 bp

ATGGCCACCGCCACGCGCCTGCGGCGTCTGGGGGCCGCGGCGGCGATCGCGACAGCGGCAAGCGGCGCCTTCCTAATCCAACCGTCGTTCACCGCCGCCGACCGCGGCGCCGGACACACTGTCTCGGAGCTTCGGCAGAGGATCAGCGACCGGAGCGCCTCTGTTCCGCCGAGGGCGGCGCAGGAGTCGGTTCTGATCGGCGCGAACTCCGGCAACCCGCTCGACATTCTGGTAATCGGCGGCGGTGCCACCGGCTGTGGCGTCGCGCTTGATGCTGCTACCAGAGGACTTCGAGTTGGTCTCGTTGAGAGGGAGGACTTCTCTTCCGGAACCTCGTCCAGGTCCACCAAGCTACTTCATGGAGGTGTTCGTTATTTGGAGAAAGCTGTTTTTAATCTCGACTATGGGCAGCTGAAGTTGGTGTTTCATGCGCTTGAGGAGCGTAAACAGGTTATTGACAATGCACCGCACCTGTGCCATGCTCTGCCGTGTATGACACCATGTTTTGACTGGTTCGATGTGGTGTACTACTGGATGGGGTTGAAAATGTACGATTTGGTGGCAGGACTACGCCTGCTACATGTGTCGAGATATTACTCTGCACAAGAGTCTGTTGAGCTCTTCCCGACGCTTGCAAGGAATGGTAAAGATAAAAGCTTGAAGGGCACCGTGGTGTATTATGATGGGCAGATGAATGATGCACGTCTTAATGTTGGATTGGCGTGCACTGCTGCTATAGCTGGTGCGGCAGTGCTTAACCATGCTGAAGTGATTTCTTTCCTGAAGGATGAGGAGAGCAATCGAACAATTGGTGCGAGAATCCGAGACAACTTAACAGGAGCAGAGTTTGATACATATGCAAAAGTTGTTGTCAATGCTGCTGGACCATTTTGTGATTCTGTAAGGAAGATGACTGATAAAGATGCAAGACCTATGATATGTCCAAGCAGTGGTGTACACATTGTACTTCCAGATTATTATTCTCCTGAGGGTATGGGATTGATTGTTCCTAAAACTAAAGATGGACGTGTTGTCTTCATGCTGCCATGGTTGGGACGAACAGTTGCTGGCACCACAGATTCTAACACAGAGATTACTCTACTTCCTGAACCACATGAGGATGAGATTCAATTCATACTGGATGCCATTTCTGATTACCTTAATGTCAAGGTACGACGTACTGACGTTCTCTCTGCTTGGAGTGGTATTCGCCCATTGGCAACAGATCCATCTGCGAAAAACACCGAGAGTATCTCTAGAGATCACGTTGTATGTGAAGATTATCCTGGACTTGTCACAATCACCGGTGGGAAGTGGACTACTTACCGTAGCATGGCAGAAGATGCAGTTAATGCAGCTATAAAGTCCGGAAAGCTGACCCCAGGAAATGAATGTGTAACCTCAAAGCTACAGATTGTTGGTGGAGATGGATGGGACCCTGCATCTTTCACAGTTATTGCTCAACAATACAGGCGCATGAAGAAGAGTCATGGTAGAGTTGTACCTGGAGTAATGGACACTGCAGCAGCAAAGCATCTATCCCATGCGTATGGTACTTTTGCCGAACGGGTTGCTGCCATTGCACAGAATGAAAACTTGGGGAAGCGACTTGCCCATGGGTACCCTTTTCTAGAGGCAGAAGTTGCTTACTGTGCACGAAATGAGTACTGTGAATCAGCCATTGATTTTATTGCTCGGAGATCTCGGCTTGCTTTCCTTGATACTGATGCGGCAGGCAGGGCATTGCCACGCATAATTGAAATATTGGCAACTGAACACAAATGGGACAAATCAAGACAGAAGCAAGAGTTAGAGATGGCCCGGAAATTCTTGGAAACGTTCAAATCTTCGAAAAATGCTCAGTTCCATGATGGGAAACACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004368 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006072 GO:0006091 GO:0006116 GO:0006127 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009117 GO:0009987 GO:0015980 GO:0016052 GO:0016491 GO:0016614 GO:0016901 GO:0019362 GO:0019400 GO:0019405 GO:0019563 GO:0019637 GO:0019674 GO:0019751 GO:0022900 GO:0022904 GO:0034308 GO:0034641 GO:0042180 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044262 GO:0044275 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046164 GO:0046174 GO:0046483 GO:0046496 GO:0051186 GO:0052646 GO:0055086 GO:0055114 GO:0071704 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

ko00564 ko01110 map00564 map01110

Pfam Domains

Protein Families

DAO DAO_C

Protein Analysis

628

Amino Acids

68.56

Weight (kDa)

8.17

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	75 - 443	1.4e-56	FAD dependent oxidoreductase
FAD_oxidored	PF12831	75 - 115	9.9e-06	FAD dependent oxidoreductase
DAO_C	PF16901	465 - 599	2.2e-36	C-terminal domain of alpha-glycerophosphate oxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10370
fragaria_vesca	FvH4_7g18820 FvH4_7g18820 FvH4_7g18820 FvH4_7g18820 FvH4_7g18820
malus_domestica	MD01G1103300.v1.1 MD07G1170100.v1.1 MD07G1170200.v1.1
prunus_persica	Prupe.2G209000_v2.0.a1
pyrus_communis	pycom01g12980
rosa_chinensis	RchiOBHm_Chr1g0362611
rosa_laevigata	RLG00000027634
rosa_multiflora	Rmu_sc0005725.1_g000012
rosa_roxburghii	Rroxscaffold_4G00293900
rosa_rugosa	Rorug01G0300100.1
rosa_samantha	Rh1AG308700 Rh1BG272400 Rh1CG289600 Rh1DG302800
rosa_wichuraiana	Rw1G027420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1620
AccB1I	GGYRCC	6 cut(s)	65, 107, 245, 665, 1070, 1620
AccB7I	CCANNNNNTGG	1 cut(s)	950
AccBSI	CCGCTC	1 cut(s)	220
AccII	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
AccIII	TCCGGA	2 cut(s)	326, 1367
AclI	AACGTT	1 cut(s)	1838
AclWI	GGATC	2 cut(s)	149, 1220
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1826
AcuI	CTGAAG	3 cut(s)	434, 786, 803
AcyI	GRCGYC	4 cut(s)	25, 66, 108, 261
AfiI	CCNNNNNNNGG	4 cut(s)	339, 950, 1052, 1333
AflIII	ACRYGT	2 cut(s)	580, 1027
AgeI	ACCGGT	1 cut(s)	1304
AgsI	TTSAA	5 cut(s)	544, 661, 1130, 1760, 1843
AhdI	GACNNNNNGTC	2 cut(s)	119, 1031
AjiI	CACGTC	2 cut(s)	704, 1028
AjnI	CCWGG	4 cut(s)	338, 1285, 1381, 1504
AjuI	GAANNNNNNNTTGG	2 cut(s)	1580, 1612
AleI	CACNNNNGTG	1 cut(s)	671
AloI	GAACNNNNNNTCC	2 cut(s)	990, 1022
Alw21I	GWGCWC	3 cut(s)	621, 728, 1657
Alw26I	GTCTC	3 cut(s)	127, 305, 819
Alw44I	GTGCAC	2 cut(s)	724, 1653
AlwI	GGATC	2 cut(s)	149, 1220
AlwNI	CAGNNNCTG	1 cut(s)	1067
Aor13HI	TCCGGA	2 cut(s)	326, 1367
AoxI	GGCC	3 cut(s)	3, 33, 1818
ApaLI	GTGCAC	2 cut(s)	724, 1653
ApeKI	GCWGC	9 cut(s)	275, 409, 731, 878, 1042, 1355, 1523, 1526, 1574
ApoI	RAATTY	1 cut(s)	1826
AsiGI	ACCGGT	1 cut(s)	1304
AsiSI	GCGATCGC	1 cut(s)	48
Asp718I	GGTACC	1 cut(s)	1620
AspLEI	GCGC	9 cut(s)	18, 68, 110, 158, 181, 203, 268, 433, 1476
AspS9I	GGNCC	5 cut(s)	33, 342, 884, 1435, 1819
AsuC2I	CCSGG	1 cut(s)	1822
AsuHPI	GGTGA	2 cut(s)	82, 1294
AsuII	TTCGAA	1 cut(s)	1850
AvaII	GGWCC	3 cut(s)	342, 884, 1435
AxyI	CCTNAGG	1 cut(s)	987
BaeGI	GKGCMC	3 cut(s)	668, 728, 1657
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	6 cut(s)	65, 107, 245, 665, 1070, 1620
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	1027
Bbv12I	GWGCWC	3 cut(s)	621, 728, 1657
BbvI	GCAGC	9 cut(s)	262, 421, 718, 865, 1029, 1367, 1535, 1538, 1561
BccI	CCATC	8 cut(s)	529, 677, 1016, 1237, 1421, 1425, 1810, 1865
BceAI	ACGGC	1 cut(s)	472
BcgI	CGANNNNNNTGC	4 cut(s)	202, 236, 1553, 1587
BciT130I	CCWGG	4 cut(s)	340, 1287, 1383, 1506
BcnI	CCSGG	1 cut(s)	1822
BcoDI	GTCTC	3 cut(s)	127, 305, 819
BfaI	CTAG	2 cut(s)	1257, 1631
BfmI	CTRYAG	3 cut(s)	735, 1409, 1521
BfoI	RGCGCY	3 cut(s)	69, 111, 159
BglI	GCCNNNNNGGC	1 cut(s)	41
BglII	AGATCT	1 cut(s)	1700
BmcAI	AGTACT	1 cut(s)	1667
Bme1390I	CCNGG	5 cut(s)	340, 1287, 1383, 1506, 1822
Bme18I	GGWCC	3 cut(s)	342, 884, 1435
BmeRI	GACNNNNNGTC	2 cut(s)	119, 1031
BmgBI	CACGTC	2 cut(s)	704, 1028
BmgT120I	GGNCC	5 cut(s)	33, 342, 884, 1435, 1819
BmrFI	CCNGG	5 cut(s)	340, 1287, 1383, 1506, 1822
BmsI	GCATC	8 cut(s)	262, 688, 913, 1132, 1333, 1451, 1543, 1717
BpiI	GAAGAC	1 cut(s)	1027
BplI	GAGNNNNNCTC	6 cut(s)	285, 317, 305, 337, 1238, 1270
BpmI	CTGGAG	1 cut(s)	1527
Bpu14I	TTCGAA	1 cut(s)	1850
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	1 cut(s)	1822
BsaHI	GRCGYC	4 cut(s)	25, 66, 108, 261
BsaI	GGTCTC	1 cut(s)	305
BsaJI	CCNNGG	7 cut(s)	36, 103, 170, 669, 1046, 1381, 1615
BsaWI	WCCGGW	4 cut(s)	150, 326, 1304, 1367
Bsc4I	CCNNNNNNNGG	4 cut(s)	339, 950, 1052, 1333
Bse118I	RCCGGY	2 cut(s)	251, 1304
Bse1I	ACTGG	3 cut(s)	515, 536, 1143
Bse21I	CCTNAGG	1 cut(s)	987
Bse3DI	GCAATG	2 cut(s)	1578, 1742
BseAI	TCCGGA	2 cut(s)	326, 1367
BseBI	CCWGG	4 cut(s)	340, 1287, 1383, 1506
BseDI	CCNNGG	7 cut(s)	36, 103, 170, 669, 1046, 1381, 1615
BseGI	GGATG	5 cut(s)	540, 793, 1126, 1147, 1436
BseLI	CCNNNNNNNGG	4 cut(s)	339, 950, 1052, 1333
BseMI	GCAATG	2 cut(s)	1578, 1742
BseMII	CTCAG	2 cut(s)	978, 1874
BseNI	ACTGG	3 cut(s)	515, 536, 1143
BseRI	GAGGAG	2 cut(s)	452, 806
BseSI	GKGCMC	3 cut(s)	668, 728, 1657
BseXI	GCAGC	9 cut(s)	262, 421, 718, 865, 1029, 1367, 1535, 1538, 1561
BsgI	GTGCAG	1 cut(s)	585
Bsh1236I	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
Bsh1285I	CGRYCG	3 cut(s)	48, 103, 151
BshFI	GGCC	3 cut(s)	5, 35, 1820
BshNI	GGYRCC	6 cut(s)	65, 107, 245, 665, 1070, 1620
BshTI	ACCGGT	1 cut(s)	1304
BsiEI	CGRYCG	3 cut(s)	48, 103, 151
BsiHKAI	GWGCWC	3 cut(s)	621, 728, 1657
BsiSI	CCGG	8 cut(s)	111, 151, 210, 252, 327, 1305, 1368, 1822
BslFI	GGGAC	3 cut(s)	1068, 1448, 1799
BslI	CCNNNNNNNGG	4 cut(s)	339, 950, 1052, 1333
BsmAI	GTCTC	3 cut(s)	127, 305, 819
BsmFI	GGGAC	3 cut(s)	1068, 1448, 1799
BsnI	GGCC	3 cut(s)	5, 35, 1820
Bso31I	GGTCTC	1 cut(s)	305
Bsp119I	TTCGAA	1 cut(s)	1850
Bsp1286I	GDGCHC	4 cut(s)	621, 668, 728, 1657
Bsp13I	TCCGGA	2 cut(s)	326, 1367
Bsp1407I	TGTACA	1 cut(s)	955
Bsp143I	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
Bsp19I	CCATGG	2 cut(s)	1046, 1615
Bsp68I	TCGCGA	1 cut(s)	50
BspANI	GGCC	3 cut(s)	5, 35, 1820
BspCNI	CTCAG	2 cut(s)	979, 1873
BspEI	TCCGGA	2 cut(s)	326, 1367
BspFNI	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
BspMAI	CTGCAG	1 cut(s)	1525
BspPI	GGATC	2 cut(s)	149, 1220
BspQI	GCTCTTC	1 cut(s)	626
BspT104I	TTCGAA	1 cut(s)	1850
BspT107I	GGYRCC	6 cut(s)	65, 107, 245, 665, 1070, 1620
BspTNI	GGTCTC	1 cut(s)	305
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	2 cut(s)	1578, 1742
BsrFI	RCCGGY	2 cut(s)	251, 1304
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	3 cut(s)	515, 536, 1143
BssAI	RCCGGY	2 cut(s)	251, 1304
BssECI	CCNNGG	7 cut(s)	36, 103, 170, 669, 1046, 1381, 1615
BssMI	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
BssNI	GRCGYC	4 cut(s)	25, 66, 108, 261
BssT1I	CCWWGG	2 cut(s)	1046, 1615
Bst2UI	CCWGG	4 cut(s)	340, 1287, 1383, 1506
Bst4CI	ACNGT	8 cut(s)	84, 121, 670, 1063, 1328, 1453, 1652, 1670
Bst6I	CTCTTC	3 cut(s)	328, 626, 1478
BstACI	GRCGYC	4 cut(s)	25, 66, 108, 261
BstAPI	GCANNNNNTGC	3 cut(s)	1343, 1352, 1643
BstAUI	TGTACA	1 cut(s)	955
BstBI	TTCGAA	1 cut(s)	1850
BstC8I	GCNNGC	8 cut(s)	20, 61, 575, 633, 724, 1069, 1710, 1735
BstDEI	CTNAG	2 cut(s)	987, 1860
BstDSI	CCRYGG	5 cut(s)	36, 103, 669, 1046, 1615
BstENI	CCTNNNNNAGG	1 cut(s)	337
BstF5I	GGATG	5 cut(s)	540, 793, 1126, 1147, 1436
BstFNI	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
BstH2I	RGCGCY	3 cut(s)	69, 111, 159
BstHHI	GCGC	9 cut(s)	18, 68, 110, 158, 181, 203, 268, 433, 1476
BstKTI	GATC	6 cut(s)	48, 144, 198, 1228, 1264, 1703
BstMAI	GTCTC	3 cut(s)	127, 305, 819
BstMBI	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
BstMCI	CGRYCG	3 cut(s)	48, 103, 151
BstNI	CCWGG	4 cut(s)	340, 1287, 1383, 1506
BstNSI	RCATGY	1 cut(s)	584
BstSCI	CCNGG	5 cut(s)	338, 1285, 1381, 1504, 1820
BstSFI	CTRYAG	3 cut(s)	735, 1409, 1521
BstSLI	GKGCMC	3 cut(s)	668, 728, 1657
BstUI	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
BstV1I	GCAGC	9 cut(s)	262, 421, 718, 865, 1029, 1367, 1535, 1538, 1561
BstV2I	GAAGAC	1 cut(s)	1027
BstX2I	RGATCY	2 cut(s)	1225, 1700
BstXI	CCANNNNNNTGG	1 cut(s)	1550
BstYI	RGATCY	2 cut(s)	1225, 1700
Bsu36I	CCTNAGG	1 cut(s)	987
BsuRI	GGCC	3 cut(s)	5, 35, 1820
BtgI	CCRYGG	5 cut(s)	36, 103, 669, 1046, 1615
BtrI	CACGTC	2 cut(s)	704, 1028
BtsCI	GGATG	5 cut(s)	540, 793, 1126, 1147, 1436
BtsI	GCAGTG	4 cut(s)	726, 756, 955, 1518
BtsIMutI	CAGTG	5 cut(s)	117, 726, 756, 955, 1518
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	8 cut(s)	20, 61, 575, 633, 724, 1069, 1710, 1735
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	9 cut(s)	18, 68, 110, 158, 181, 203, 268, 433, 1476
Cfr10I	RCCGGY	2 cut(s)	251, 1304
Cfr13I	GGNCC	5 cut(s)	33, 342, 884, 1435, 1819
Cfr42I	CCGCGG	2 cut(s)	39, 106
CseI	GACGC	3 cut(s)	14, 250, 637
CspAI	ACCGGT	1 cut(s)	1304
DdeI	CTNAG	2 cut(s)	987, 1860
DinI	GGCGCC	2 cut(s)	67, 109
DpnI	GATC	6 cut(s)	47, 143, 197, 1227, 1263, 1702
DpnII	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
DriI	GACNNNNNGTC	2 cut(s)	119, 1031
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	328, 626, 1478
Eam1105I	GACNNNNNGTC	2 cut(s)	119, 1031
EarI	CTCTTC	3 cut(s)	328, 626, 1478
EciI	GGCGGA	1 cut(s)	156
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	2 cut(s)	1046, 1615
Eco24I	GRGCYC	1 cut(s)	621
Eco31I	GGTCTC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	342, 884, 1435
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	3 cut(s)	434, 786, 803
Eco81I	CCTNAGG	1 cut(s)	987
EcoICRI	GAGCTC	1 cut(s)	619
EcoNI	CCTNNNNNAGG	1 cut(s)	337
EcoO109I	RGGNCCY	1 cut(s)	1435
EcoRII	CCWGG	4 cut(s)	338, 1285, 1381, 1504
EcoT14I	CCWWGG	2 cut(s)	1046, 1615
EcoT38I	GRGCYC	1 cut(s)	621
EgeI	GGCGCC	2 cut(s)	67, 109
EheI	GGCGCC	2 cut(s)	67, 109
ErhI	CCWWGG	2 cut(s)	1046, 1615
FaqI	GGGAC	3 cut(s)	1068, 1448, 1799
FauI	CCCGC	1 cut(s)	225
FauNDI	CATATG	1 cut(s)	856
FokI	GGATG	5 cut(s)	547, 800, 1133, 1154, 1443
FriOI	GRGCYC	1 cut(s)	621
FspBI	CTAG	2 cut(s)	1257, 1631
GlaI	GCGC	9 cut(s)	17, 67, 109, 157, 180, 202, 267, 432, 1475
GsuI	CTGGAG	1 cut(s)	1527
HaeII	RGCGCY	3 cut(s)	69, 111, 159
HaeIII	GGCC	3 cut(s)	5, 35, 1820
HapII	CCGG	8 cut(s)	111, 151, 210, 252, 327, 1305, 1368, 1822
HgaI	GACGC	3 cut(s)	14, 250, 637
HhaI	GCGC	9 cut(s)	18, 68, 110, 158, 181, 203, 268, 433, 1476
Hin1I	GRCGYC	4 cut(s)	25, 66, 108, 261
Hin6I	GCGC	9 cut(s)	16, 66, 108, 156, 179, 201, 266, 431, 1474
HinP1I	GCGC	9 cut(s)	16, 66, 108, 156, 179, 201, 266, 431, 1474
HindIII	AAGCTT	1 cut(s)	655
HinfI	GANTC	8 cut(s)	185, 608, 819, 896, 1079, 1126, 1486, 1673
HpaII	CCGG	8 cut(s)	111, 151, 210, 252, 327, 1305, 1368, 1822
HphI	GGTGA	2 cut(s)	82, 1294
Hpy166II	GTNNAC	9 cut(s)	90, 345, 446, 526, 726, 956, 958, 1317, 1655
Hpy188I	TCNGA	5 cut(s)	127, 195, 824, 1153, 1698
Hpy8I	GTNNAC	9 cut(s)	90, 345, 446, 526, 726, 956, 958, 1317, 1655
Hpy99I	CGWCG	4 cut(s)	88, 266, 631, 1179
HpyAV	CCTTC	3 cut(s)	79, 655, 778
HpyCH4III	ACNGT	8 cut(s)	84, 121, 670, 1063, 1328, 1453, 1652, 1670
HpyCH4IV	ACGT	6 cut(s)	703, 1027, 1177, 1185, 1266, 1838
HpyF3I	CTNAG	2 cut(s)	987, 1860
HpySE526I	ACGT	6 cut(s)	703, 1027, 1177, 1185, 1266, 1838
Hsp92I	GRCGYC	4 cut(s)	25, 66, 108, 261
HspAI	GCGC	9 cut(s)	16, 66, 108, 156, 179, 201, 266, 431, 1474
KasI	GGCGCC	2 cut(s)	65, 107
KflI	GGGWCCC	1 cut(s)	1435
Kpn2I	TCCGGA	2 cut(s)	326, 1367
KpnI	GGTACC	1 cut(s)	1624
KspI	CCGCGG	2 cut(s)	39, 106
Kzo9I	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	4 cut(s)	127, 153, 439, 839
Lsp1109I	GCAGC	9 cut(s)	262, 421, 718, 865, 1029, 1367, 1535, 1538, 1561
LweI	GCATC	8 cut(s)	262, 688, 913, 1132, 1333, 1451, 1543, 1717
MaeI	CTAG	2 cut(s)	1257, 1631
MaeII	ACGT	6 cut(s)	703, 1027, 1177, 1185, 1266, 1838
MaeIII	GTNAC	2 cut(s)	1294, 1396
MalI	GATC	6 cut(s)	47, 143, 197, 1227, 1263, 1702
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
MboII	GAAGA	9 cut(s)	315, 613, 919, 1027, 1289, 1352, 1492, 1495, 1839
MfeI	CAATTG	1 cut(s)	807
MflI	RGATCY	2 cut(s)	1225, 1700
MhlI	GDGCHC	4 cut(s)	621, 668, 728, 1657
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	807, 1130, 1755, 1826, 1882
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	2 cut(s)	66, 108
MlyI	GAGTC	3 cut(s)	194, 617, 1495
MmeI	TCCRAC	2 cut(s)	103, 694
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	2 cut(s)	326, 1367
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	393, 708, 756, 833, 1161, 1350
MslI	CAYNNNNRTG	4 cut(s)	363, 671, 1119, 1548
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	4 cut(s)	38, 56, 105, 412
MspI	CCGG	8 cut(s)	111, 151, 210, 252, 327, 1305, 1368, 1822
MspR9I	CCNGG	5 cut(s)	340, 1287, 1383, 1506, 1822
MunI	CAATTG	1 cut(s)	807
MvaI	CCWGG	4 cut(s)	340, 1287, 1383, 1506
MvnI	CGCG	6 cut(s)	16, 38, 50, 105, 203, 266
NarI	GGCGCC	2 cut(s)	66, 108
NciI	CCSGG	1 cut(s)	1822
NcoI	CCATGG	2 cut(s)	1046, 1615
NdeI	CATATG	1 cut(s)	856
NdeII	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
NmeAIII	GCCGAG	2 cut(s)	195, 1684
NmuCI	GTSAC	1 cut(s)	1294
NruI	TCGCGA	1 cut(s)	50
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	1 cut(s)	1850
OliI	CACNNNNGTG	1 cut(s)	671
PciI	ACATGT	1 cut(s)	580
PciSI	GCTCTTC	1 cut(s)	626
PfeI	GAWTC	5 cut(s)	819, 896, 1079, 1126, 1673
PflMI	CCANNNNNTGG	1 cut(s)	950
PfoI	TCCNGGA	1 cut(s)	1285
PinAI	ACCGGT	1 cut(s)	1304
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	3 cut(s)	193, 616, 1494
PluTI	GGCGCC	2 cut(s)	69, 111
PpsI	GAGTC	3 cut(s)	193, 616, 1494
PpuMI	RGGWCCY	1 cut(s)	1435
PscI	ACATGT	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	621
Psp1406I	AACGTT	1 cut(s)	1838
Psp5II	RGGWCCY	1 cut(s)	1435
Psp6I	CCWGG	4 cut(s)	338, 1285, 1381, 1504
PspGI	CCWGG	4 cut(s)	338, 1285, 1381, 1504
PspPI	GGNCC	5 cut(s)	33, 342, 884, 1435, 1819
PspPPI	RGGWCCY	1 cut(s)	1435
PstI	CTGCAG	1 cut(s)	1525
PstNI	CAGNNNCTG	1 cut(s)	1067
PsuI	RGATCY	2 cut(s)	1225, 1700
PvuI	CGATCG	1 cut(s)	48
PvuII	CAGCTG	1 cut(s)	412
RgaI	GCGATCGC	1 cut(s)	48
RruI	TCGCGA	1 cut(s)	50
RseI	CAYNNNNRTG	4 cut(s)	363, 671, 1119, 1548
SacI	GAGCTC	1 cut(s)	621
SacII	CCGCGG	2 cut(s)	39, 106
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	6 cut(s)	393, 708, 756, 833, 1161, 1350
Sau3AI	GATC	6 cut(s)	45, 141, 195, 1225, 1261, 1700
Sau96I	GGNCC	5 cut(s)	33, 342, 884, 1435, 1819
ScaI	AGTACT	1 cut(s)	1667
SchI	GAGTC	3 cut(s)	194, 617, 1495
ScrFI	CCNGG	5 cut(s)	340, 1287, 1383, 1506, 1822
SduI	GDGCHC	4 cut(s)	621, 668, 728, 1657
SfaAI	GCGATCGC	1 cut(s)	48
SfaNI	GCATC	8 cut(s)	262, 688, 913, 1132, 1333, 1451, 1543, 1717
SfcI	CTRYAG	3 cut(s)	735, 1409, 1521
SfoI	GGCGCC	2 cut(s)	67, 109
Sfr303I	CCGCGG	2 cut(s)	39, 106
SfuI	TTCGAA	1 cut(s)	1850
SgfI	GCGATCGC	1 cut(s)	48
SgrAI	CRCCGGYG	1 cut(s)	1304
SgrBI	CCGCGG	2 cut(s)	39, 106
SinI	GGWCC	3 cut(s)	342, 884, 1435
SmiMI	CAYNNNNRTG	4 cut(s)	363, 671, 1119, 1548
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	5 cut(s)	807, 1130, 1755, 1826, 1882
SspDI	GGCGCC	2 cut(s)	65, 107
SspI	AATATT	1 cut(s)	1764
SspMI	CTAG	2 cut(s)	1257, 1631
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	5 cut(s)	338, 1285, 1381, 1504, 1820
StyI	CCWWGG	2 cut(s)	1046, 1615
TaaI	ACNGT	8 cut(s)	84, 121, 670, 1063, 1328, 1453, 1652, 1670
TaiI	ACGT	6 cut(s)	706, 1030, 1180, 1188, 1269, 1841
TaqI	TCGA	7 cut(s)	222, 292, 399, 516, 587, 802, 1850
TasI	AATT	5 cut(s)	807, 1130, 1755, 1826, 1882
TatI	WGTACW	4 cut(s)	525, 955, 964, 1665
TfiI	GAWTC	5 cut(s)	819, 896, 1079, 1126, 1673
Tru1I	TTAA	6 cut(s)	393, 708, 756, 833, 1161, 1350
Tru9I	TTAA	6 cut(s)	393, 708, 756, 833, 1161, 1350
TscAI	CASTG	5 cut(s)	124, 733, 756, 955, 1525
TseFI	GTSAC	1 cut(s)	1294
TseI	GCWGC	9 cut(s)	275, 409, 731, 878, 1042, 1355, 1523, 1526, 1574
Tsp45I	GTSAC	1 cut(s)	1294
TspDTI	ATGAA	8 cut(s)	347, 416, 707, 1027, 1123, 1404, 1493, 1605
TspRI	CASTG	5 cut(s)	124, 733, 756, 955, 1525
Van91I	CCANNNNNTGG	1 cut(s)	950
VneI	GTGCAC	2 cut(s)	724, 1653
VpaK11BI	GGWCC	3 cut(s)	342, 884, 1435
XagI	CCTNNNNNAGG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	1826
XbaI	TCTAGA	2 cut(s)	1256, 1630
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	2 cut(s)	1257, 1631
ZrmI	AGTACT	1 cut(s)	1667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.