Rh2AG152600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019093
Physical Location & Seq
Forward (+)
13961237 .. 13962636
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG152600.1

Sequence Viewer

Length: 477 bp
ATGAACCAAACCCTAACCTGCTCACTCCTCCTTTCAATTTCCACCGAAACCGATCTGGGGTTTCTTGAATTCTCACTCCTCCTTTCAATCTCCACCGAAACCGATATGGGGTTTCTTGAATTCGATTTGGGGAGGGTGCTGTTCGGTATATGTAACGCTTACCCATGGCTCGGTGATGGCTGTCCGGCGGCGGTCTGTAGATACTGGCGGGGCAAAACACTCGGCGGTGGCCGTGGTGGGGATGGGCCAGGCTTGGCTGGAGGCTTATGGTCTTCCTCTTTCCTTGCAGCTCGCATCCCTAGAATTGGATCTGCTTCCCTTCGGAGACCGTACTTCCGCCATAAAGCTCACCTCCCCTTTAACCCGACCCGACTGCAAAGTCTTACTATTGGGCTCCTGCAATGGGCACCGTTTCTCCCAAAAAGAAGATCGGTGAAAGAACGTGTTCAAGAATGCTGGGTCACCGGAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.45

Weight (kDa)

9.66

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019093)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004574.1_g000055
rosa_samantha Rh2AG152600 Rh2BG103400 Rh2CG105800 Rh3BG058600 Rh3BG256700 Rh3CG057800 Rh3DG059100 Rh4CG015600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 378
Acc36I ACCTGC 1 cut(s) 26
AccB1I GGYRCC 1 cut(s) 406
AciI CCGC 5 cut(s) 188, 191, 208, 225, 337
AclWI GGATC 1 cut(s) 316
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 68, 119
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 6 cut(s) 57, 108, 170, 238, 305, 403
AflIII ACRYGT 1 cut(s) 442
AgsI TTSAA 5 cut(s) 36, 68, 87, 119, 449
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 2 cut(s) 290, 347
AluI AGCT 2 cut(s) 290, 347
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 316
AoxI GGCC 2 cut(s) 229, 245
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 2 cut(s) 68, 119
Asp700I GAANNNNTTC 1 cut(s) 444
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 4 cut(s) 185, 341, 445, 454
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 406
BanII GRGCYC 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 299
BccI CCATC 2 cut(s) 170, 236
BceAI ACGGC 1 cut(s) 216
BcgI CGANNNNNNTGC 4 cut(s) 202, 236, 355, 389
BciT130I CCWGG 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 300
BfmI CTRYAG 1 cut(s) 196
BfuAI ACCTGC 1 cut(s) 26
BisI GCNGC 2 cut(s) 189, 288
BlsI GCNGC 2 cut(s) 190, 289
Bme1390I CCNGG 1 cut(s) 249
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 395, 408
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 279
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 164, 232
BsaWI WCCGGW 1 cut(s) 464
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 6 cut(s) 57, 108, 170, 238, 305, 403
Bse1I ACTGG 1 cut(s) 209
Bse3DI GCAATG 1 cut(s) 407
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 164, 232
BseGI GGATG 2 cut(s) 247, 294
BseLI CCNNNNNNNGG 6 cut(s) 57, 108, 170, 238, 305, 403
BseMI GCAATG 1 cut(s) 407
BseNI ACTGG 1 cut(s) 209
BseRI GAGGAG 2 cut(s) 17, 68
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 456
BshFI GGCC 2 cut(s) 231, 247
BshNI GGYRCC 1 cut(s) 406
BsiSI CCGG 2 cut(s) 185, 465
BslI CCNNNNNNNGG 6 cut(s) 57, 108, 170, 238, 305, 403
BsmAI GTCTC 1 cut(s) 319
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 2 cut(s) 231, 247
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 2 cut(s) 396, 409
Bsp143I GATC 3 cut(s) 52, 308, 428
Bsp19I CCATGG 1 cut(s) 164
BspACI CCGC 5 cut(s) 188, 191, 208, 225, 337
BspANI GGCC 2 cut(s) 231, 247
BspLI GGNNCC 2 cut(s) 395, 408
BspMI ACCTGC 1 cut(s) 26
BspPI GGATC 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 406
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 407
BsrI ACTGG 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 164, 232
BssMI GATC 3 cut(s) 52, 308, 428
BssT1I CCWWGG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 2 cut(s) 330, 411
BstC8I GCNNGC 1 cut(s) 292
BstDSI CCRYGG 2 cut(s) 164, 232
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 2 cut(s) 247, 294
BstKTI GATC 3 cut(s) 55, 311, 431
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 3 cut(s) 52, 308, 428
BstNI CCWGG 1 cut(s) 249
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 1 cut(s) 247
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 1 cut(s) 308
BstYI RGATCY 1 cut(s) 308
BsuRI GGCC 2 cut(s) 231, 247
BtgI CCRYGG 2 cut(s) 164, 232
BtsCI GGATG 2 cut(s) 247, 294
BveI ACCTGC 1 cut(s) 26
Cac8I GCNNGC 1 cut(s) 292
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 331
CviAII CATG 1 cut(s) 165
CviQI GTAC 1 cut(s) 331
DpnI GATC 3 cut(s) 54, 310, 430
DpnII GATC 3 cut(s) 52, 308, 428
DrdI GACNNNNNNGTC 1 cut(s) 378
DseDI GACNNNNNNGTC 1 cut(s) 378
EaeI YGGCCR 1 cut(s) 229
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 396
Eco31I GGTCTC 1 cut(s) 319
Eco91I GGTNACC 1 cut(s) 460
EcoO65I GGTNACC 1 cut(s) 460
EcoRI GAATTC 2 cut(s) 68, 119
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 1 cut(s) 164
EcoT38I GRGCYC 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 168
FaiI YATR 6 cut(s) 107, 149, 151, 166, 268, 342
FatI CATG 1 cut(s) 164
FauI CCCGC 1 cut(s) 201
Fnu4HI GCNGC 2 cut(s) 189, 288
FokI GGATG 2 cut(s) 254, 281
FriOI GRGCYC 1 cut(s) 396
Fsp4HI GCNGC 2 cut(s) 189, 288
FspBI CTAG 1 cut(s) 300
GluI GCNGC 2 cut(s) 189, 288
GsaI CCCAGC 1 cut(s) 460
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 231, 247
HapII CCGG 2 cut(s) 185, 465
Hin1II CATG 1 cut(s) 168
HpaII CCGG 2 cut(s) 185, 465
HphI GGTGA 4 cut(s) 185, 341, 445, 454
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 3 cut(s) 65, 116, 449
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 2 cut(s) 330, 411
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 3 cut(s) 287, 376, 400
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 1 cut(s) 168
Kzo9I GATC 3 cut(s) 52, 308, 428
LmnI GCTCC 1 cut(s) 399
LpnPI CCDG 9 cut(s) 31, 41, 190, 198, 234, 243, 261, 410, 442
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 300
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 2 cut(s) 152, 460
MalI GATC 3 cut(s) 54, 310, 430
MboI GATC 3 cut(s) 52, 308, 428
MboII GAAGA 2 cut(s) 264, 438
MflI RGATCY 1 cut(s) 308
MhlI GDGCHC 2 cut(s) 396, 409
MluCI AATT 4 cut(s) 36, 68, 119, 303
MnlI CCTC 6 cut(s) 38, 89, 126, 254, 286, 362
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 1 cut(s) 360
MspI CCGG 2 cut(s) 185, 465
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 458
MvaI CCWGG 1 cut(s) 249
NcoI CCATGG 1 cut(s) 164
NdeII GATC 3 cut(s) 52, 308, 428
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 2 cut(s) 395, 408
NmeAIII GCCGAG 1 cut(s) 201
NmuCI GTSAC 1 cut(s) 460
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 444
PkrI GCNGC 2 cut(s) 190, 289
Psp6I CCWGG 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 395, 408
PspPI GGNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SaqAI TTAA 1 cut(s) 360
SatI GCNGC 2 cut(s) 189, 288
Sau3AI GATC 3 cut(s) 52, 308, 428
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 396, 409
SetI ASST 5 cut(s) 20, 292, 349, 354, 445
SfaNI GCATC 1 cut(s) 303
SfcI CTRYAG 1 cut(s) 196
Sse9I AATT 4 cut(s) 36, 68, 119, 303
SsiI CCGC 5 cut(s) 188, 191, 208, 225, 337
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 2 cut(s) 330, 411
TaiI ACGT 1 cut(s) 445
TaqI TCGA 1 cut(s) 123
TasI AATT 4 cut(s) 36, 68, 119, 303
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 68, 119
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.