Rh3BG256700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0019093
Physical Location & Seq
Forward (+)
24852264 .. 24854263
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG256700.1

Sequence Viewer

Length: 261 bp
ATGCCTGCAGAGCTTTCGATTTTCAGAGCCTGGTACGAAGATCTGGGGATTGGATTGAGGCTTCGAACACGAATGAGAGGAGGCAATCAGCGAGATGCAAGAGCAGTGTTCACTGCGCGGCGCTGGAGGTTTCAGTTTTCAACATGGAAGAGAAGATGTAACCCTCACCCATGGCTCGGCGATGGTGGTCTGGCGACGGTCTGCAGATACCGGTTGGGCAGAACACCTGGCGGTCAAGCGGCGGTGGCCGTGGTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

11.71

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019093)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004574.1_g000055
rosa_samantha Rh2AG152600 Rh2BG103400 Rh2CG105800 Rh3BG058600 Rh3BG256700 Rh3CG057800 Rh3DG059100 Rh4CG015600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 118
AciI CCGC 4 cut(s) 118, 231, 239, 242
AcoI YGGCCR 1 cut(s) 246
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 176
AgeI ACCGGT 1 cut(s) 210
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 2 cut(s) 29, 226
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 30
AoxI GGCC 1 cut(s) 246
AsiGI ACCGGT 1 cut(s) 210
AspLEI GCGC 2 cut(s) 118, 123
AsuHPI GGTGA 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 64
BccI CCATC 1 cut(s) 176
BceAI ACGGC 1 cut(s) 233
BcgI CGANNNNNNTGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 31, 228
BfmI CTRYAG 2 cut(s) 6, 202
BfoI RGCGCY 1 cut(s) 124
BglII AGATCT 1 cut(s) 40
BisI GCNGC 2 cut(s) 119, 240
BlsI GCNGC 2 cut(s) 120, 241
Bme1390I CCNGG 2 cut(s) 31, 228
BmrFI CCNGG 2 cut(s) 31, 228
BmsI GCATC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 145
Bpu14I TTCGAA 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 170, 249
BsaWI WCCGGW 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 210
BseBI CCWGG 2 cut(s) 31, 228
BseDI CCNNGG 2 cut(s) 170, 249
BseLI CCNNNNNNNGG 1 cut(s) 176
BseRI GAGGAG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 176
BsnI GGCC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 170
BspACI CCGC 4 cut(s) 118, 231, 239, 242
BspANI GGCC 1 cut(s) 248
BspFNI CGCG 1 cut(s) 118
BspMAI CTGCAG 2 cut(s) 10, 206
BspT104I TTCGAA 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 210
BssAI RCCGGY 1 cut(s) 210
BssECI CCNNGG 2 cut(s) 170, 249
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 2 cut(s) 31, 228
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 170, 249
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 2 cut(s) 118, 123
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 2 cut(s) 10, 245
BstNI CCWGG 2 cut(s) 31, 228
BstSCI CCNGG 2 cut(s) 29, 226
BstSFI CTRYAG 2 cut(s) 6, 202
BstUI CGCG 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 2 cut(s) 170, 249
BtgZI GCGATG 1 cut(s) 195
BtsI GCAGTG 2 cut(s) 111, 111
BtsIMutI CAGTG 2 cut(s) 111, 111
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 30
CfoI GCGC 2 cut(s) 118, 123
Cfr10I RCCGGY 1 cut(s) 210
Csp6I GTAC 1 cut(s) 34
CspAI ACCGGT 1 cut(s) 210
CviAII CATG 2 cut(s) 144, 171
CviJI RGCY 5 cut(s) 13, 29, 61, 175, 248
CviKI_1 RGCY 5 cut(s) 13, 29, 61, 175, 248
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 170
EcoRII CCWGG 2 cut(s) 29, 226
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 2 cut(s) 147, 174
FaiI YATR 2 cut(s) 145, 172
FatI CATG 2 cut(s) 143, 170
Fnu4HI GCNGC 2 cut(s) 119, 240
Fsp4HI GCNGC 2 cut(s) 119, 240
GlaI GCGC 2 cut(s) 117, 122
GluI GCNGC 2 cut(s) 119, 240
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 248
HapII CCGG 1 cut(s) 211
HhaI GCGC 2 cut(s) 118, 123
Hin1II CATG 2 cut(s) 147, 174
Hin6I GCGC 2 cut(s) 116, 121
HinP1I GCGC 2 cut(s) 116, 121
HpaII CCGG 1 cut(s) 211
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 111
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 111
Hpy99I CGWCG 1 cut(s) 199
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 3 cut(s) 8, 98, 204
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 245
Hsp92II CATG 2 cut(s) 147, 174
HspAI GCGC 2 cut(s) 116, 121
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 16, 18, 29, 43, 109, 176, 213, 224, 240
LweI GCATC 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 158
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 3 cut(s) 50, 160, 165
MflI RGATCY 1 cut(s) 40
MnlI CCTC 5 cut(s) 51, 71, 74, 120, 174
MseI TTAA 1 cut(s) 259
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 31, 228
MteI GCGCNGCGC 1 cut(s) 119
MvaI CCWGG 2 cut(s) 31, 228
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 10, 245
NcoI CCATGG 1 cut(s) 170
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 147, 174
NmeAIII GCCGAG 1 cut(s) 156
NspV TTCGAA 1 cut(s) 64
PinAI ACCGGT 1 cut(s) 210
PkrI GCNGC 2 cut(s) 120, 241
Psp6I CCWGG 2 cut(s) 29, 226
PspGI CCWGG 2 cut(s) 29, 226
PstI CTGCAG 2 cut(s) 10, 206
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 259
SatI GCNGC 2 cut(s) 119, 240
Sau3AI GATC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 31, 228
SetI ASST 3 cut(s) 15, 131, 229
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 2 cut(s) 6, 202
SfuI TTCGAA 1 cut(s) 64
SsiI CCGC 4 cut(s) 118, 231, 239, 242
StyD4I CCNGG 2 cut(s) 29, 226
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 2 cut(s) 17, 64
TauI GCSGC 2 cut(s) 121, 242
Tru1I TTAA 1 cut(s) 259
Tru9I TTAA 1 cut(s) 259
TscAI CASTG 2 cut(s) 111, 118
TspRI CASTG 2 cut(s) 111, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.