Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0023483

Physical Location & Seq

Genomic Coordinates Reverse (-)

27454291 .. 27464928

Gene Structure 10638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG246400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGTAGATTGTAAATCCTCTAAAAGTTTCATAGAAGCAACTGCACCTTCATCCAATGATAAGTTGACGCACAAGAGTGATGTCTATCCTTTTGGAGTTGTACTTTTGGAGCTTCTGCTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCTCTAGTCACATGGGCCCTGCCTCAGCTTACTGACCGATCAAAGCTTCCACACATTGTGGATCCCATGATCAAAGATACAATGGATCTGAAGCGCTTATACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACAGCCCACTGATAACAGATGTTTTGCATTCTCTTGTCCCTCTTGTTCCTGTTGAGCTCAGAGGGACACTTAGAGTTACACAACCTGCACCTCCAGGAAACATTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

140

Amino Acids

15.42

Weight (kDa)

6.89

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023483)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG246400 Rh6BG388500 Rh6CG393900 Rh6DG380500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	145
AclWI	GGATC	3 cut(s)	218, 231, 255
AcuI	CTGAAG	1 cut(s)	272
AdeI	CACNNNGTG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	102
AfeI	AGCGCT	1 cut(s)	257
AjnI	CCWGG	2 cut(s)	264, 403
AleI	CACNNNNGTG	1 cut(s)	75
AluBI	AGCT	5 cut(s)	112, 190, 208, 281, 367
AluI	AGCT	5 cut(s)	112, 190, 208, 281, 367
Alw21I	GWGCWC	1 cut(s)	369
AlwI	GGATC	3 cut(s)	218, 231, 255
Aor51HI	AGCGCT	1 cut(s)	257
AoxI	GGCC	2 cut(s)	128, 177
ApaI	GGGCCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	2 cut(s)	177, 178
BaeGI	GKGCMC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	2 cut(s)	181, 369
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	1 cut(s)	369
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	259
BciT130I	CCWGG	2 cut(s)	266, 405
BclI	TGATCA	2 cut(s)	231, 415
BfaI	CTAG	2 cut(s)	119, 167
BfmI	CTRYAG	2 cut(s)	132, 276
BfoI	RGCGCY	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	403
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	266, 405
BmgT120I	GGNCC	2 cut(s)	177, 178
BmiI	GGNNCC	3 cut(s)	147, 179, 225
BmrFI	CCNGG	2 cut(s)	266, 405
BpmI	CTGGAG	1 cut(s)	387
Bpu10I	CCTNAGC	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	147
Bse8I	GATNNNNATC	1 cut(s)	84
BseBI	CCWGG	2 cut(s)	266, 405
BseGI	GGATG	1 cut(s)	50
BseJI	GATNNNNATC	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	200, 382
BseNI	ACTGG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	2 cut(s)	27, 381
BshFI	GGCC	2 cut(s)	130, 179
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	332, 388
BsmFI	GGGAC	2 cut(s)	332, 388
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	130, 179
Bsp120I	GGGCCC	1 cut(s)	177
Bsp1286I	GDGCHC	2 cut(s)	181, 369
Bsp143I	GATC	5 cut(s)	200, 223, 231, 247, 415
BspANI	GGCC	2 cut(s)	130, 179
BspCNI	CTCAG	2 cut(s)	199, 381
BspLI	GGNNCC	3 cut(s)	147, 179, 225
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	3 cut(s)	218, 231, 255
BspT107I	GGYRCC	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	200, 223, 231, 247, 415
Bst2UI	CCWGG	2 cut(s)	266, 405
BstDEI	CTNAG	3 cut(s)	186, 368, 380
BstF5I	GGATG	1 cut(s)	50
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	5 cut(s)	203, 226, 234, 250, 418
BstMBI	GATC	5 cut(s)	200, 223, 231, 247, 415
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	2 cut(s)	266, 405
BstSCI	CCNGG	2 cut(s)	264, 403
BstSFI	CTRYAG	2 cut(s)	132, 276
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	223, 247
BstYI	RGATCY	2 cut(s)	223, 247
BsuRI	GGCC	2 cut(s)	130, 179
BtsCI	GGATG	1 cut(s)	50
BtsIMutI	CAGTG	2 cut(s)	317, 418
BveI	ACCTGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	177, 178
CseI	GACGC	1 cut(s)	76
CsiI	ACCWGGT	1 cut(s)	264
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	2 cut(s)	174, 229
CviJI	RGCY	8 cut(s)	112, 130, 179, 190, 208, 281, 315, 367
CviKI_1	RGCY	8 cut(s)	112, 130, 179, 190, 208, 281, 315, 367
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	3 cut(s)	186, 368, 380
DpnI	GATC	5 cut(s)	202, 225, 233, 249, 417
DpnII	GATC	5 cut(s)	200, 223, 231, 247, 415
DraIII	CACNNNGTG	1 cut(s)	220
Ecl136II	GAGCTC	1 cut(s)	367
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	2 cut(s)	181, 369
Eco47III	AGCGCT	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	264, 403
EcoT38I	GRGCYC	2 cut(s)	181, 369
FaeI	CATG	2 cut(s)	177, 232
FaiI	YATR	5 cut(s)	32, 175, 230, 262, 289
FaqI	GGGAC	2 cut(s)	332, 388
FatI	CATG	2 cut(s)	173, 228
FbaI	TGATCA	2 cut(s)	231, 415
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	37
FriOI	GRGCYC	2 cut(s)	181, 369
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	119, 167
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	273
GsuI	CTGGAG	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	2 cut(s)	130, 179
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	177, 232
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HindIII	AAGCTT	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	252, 371
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	57, 120
HpyCH4V	TGCA	4 cut(s)	44, 295, 337, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	186, 368, 380
Hsp92II	CATG	2 cut(s)	177, 232
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	2 cut(s)	231, 415
Kzo9I	GATC	5 cut(s)	200, 223, 231, 247, 415
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	9 cut(s)	128, 144, 194, 251, 278, 372, 390, 408, 417
Lsp1109I	GCAGC	1 cut(s)	259
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	2 cut(s)	119, 167
MaeIII	GTNAC	3 cut(s)	169, 308, 385
MalI	GATC	5 cut(s)	202, 225, 233, 249, 417
MboI	GATC	5 cut(s)	200, 223, 231, 247, 415
MboII	GAAGA	1 cut(s)	135
MflI	RGATCY	2 cut(s)	223, 247
MhlI	GDGCHC	2 cut(s)	181, 369
MnlI	CCTC	5 cut(s)	28, 195, 360, 365, 411
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	266, 405
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	266, 405
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	5 cut(s)	200, 223, 231, 247, 415
NlaIII	CATG	2 cut(s)	177, 232
NlaIV	GGNNCC	3 cut(s)	147, 179, 225
NmuCI	GTSAC	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	75
PceI	AGGCCT	1 cut(s)	130
PctI	GAATGC	1 cut(s)	337
PfoI	TCCNGGA	1 cut(s)	403
PkrI	GCNGC	1 cut(s)	274
Psp124BI	GAGCTC	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	264, 403
PspGI	CCWGG	2 cut(s)	264, 403
PspN4I	GGNNCC	3 cut(s)	147, 179, 225
PspOMI	GGGCCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	177, 178
PsuI	RGATCY	2 cut(s)	223, 247
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	75
SacI	GAGCTC	1 cut(s)	369
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	5 cut(s)	200, 223, 231, 247, 415
Sau96I	GGNCC	2 cut(s)	177, 178
ScrFI	CCNGG	2 cut(s)	266, 405
SduI	GDGCHC	2 cut(s)	181, 369
SetI	ASST	9 cut(s)	49, 114, 192, 210, 270, 283, 369, 397, 403
SexAI	ACCWGGT	1 cut(s)	264
SfcI	CTRYAG	2 cut(s)	132, 276
SmiMI	CAYNNNNRTG	1 cut(s)	75
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	2 cut(s)	119, 167
SstI	GAGCTC	1 cut(s)	369
StuI	AGGCCT	1 cut(s)	130
StyD4I	CCNGG	2 cut(s)	264, 403
TaqII	GACCGA	1 cut(s)	213
TatI	WGTACW	1 cut(s)	100
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	2 cut(s)	19, 39
TspRI	CASTG	1 cut(s)	324
XspI	CTAG	2 cut(s)	119, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.