Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0023483

Physical Location & Seq

Genomic Coordinates Reverse (-)

57464230 .. 57467378

Gene Structure 3149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG380500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGCTTCTTTTTTTTGTTGTTGTAAATTTTGTTGCTTTTGTGCTTGTAGACCAAAACAAGCCATGCCCTTTTTGTGTTGGAGCCACAGTTGTACCTGACCCGCTTGTTTCTTCCATGTCTACCCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGAATTCAACAAGGAAGTGAAGGAAATCAAATGGATTCGCATAAGAAACCGCTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGGAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGATGCCGAGAAGGAGCTGGCATTGTCTCCATTTTTCGGTAAATTCAATTCCATAAAGATGGTTGGAAACAAAGGGACCCTCTCATGGATCGGCATTAACATGGCCTATGCGAATGAAAATCGCTCTGGATGCTGCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTAAGTTGACGGACAAGAGTGATGTCTATGCTTTTGGAGTTGTACTTTTGGAGCTTCTACTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCCTTAGTCACATGGGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTGAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACAGATGTTTTGCATTCTCTTGTCCCTCTTGTTCCTGTCGAGCTCGGAGGGACACTTAGAGTTACACAACCTGCACCTCCAGGAAACCCCCAAGAGTCTTCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

35.16

Weight (kDa)

8.35

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	161 - 260	1.3e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	162 - 245	1.8e-12	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023483)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG246400 Rh6BG388500 Rh6CG393900 Rh6DG380500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	943
AccB1I	GGYRCC	2 cut(s)	560, 685
AccB7I	CCANNNNNTGG	1 cut(s)	760
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	51, 122
AciI	CCGC	3 cut(s)	104, 242, 853
AclWI	GGATC	4 cut(s)	452, 758, 771, 795
AcsI	RAATTY	3 cut(s)	28, 195, 398
AcuI	CTGAAG	1 cut(s)	812
AdeI	CACNNNGTG	2 cut(s)	278, 760
AfaI	GTAC	4 cut(s)	96, 326, 642, 803
AfiI	CCNNNNNNNGG	3 cut(s)	392, 441, 760
AflII	CTTAAG	1 cut(s)	335
AgsI	TTSAA	2 cut(s)	200, 403
AjnI	CCWGG	3 cut(s)	190, 804, 943
AleI	CACNNNNGTG	1 cut(s)	298
Alw21I	GWGCWC	2 cut(s)	356, 909
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	4 cut(s)	452, 758, 771, 795
Ama87I	CYCGRG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	459, 528, 668, 717
ApeKI	GCWGC	2 cut(s)	489, 812
ApoI	RAATTY	3 cut(s)	28, 195, 398
AspS9I	GGNCC	3 cut(s)	432, 528, 717
AsuHPI	GGTGA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	432
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BamHI	GGATCC	1 cut(s)	763
BanI	GGYRCC	2 cut(s)	560, 685
BanII	GRGCYC	2 cut(s)	356, 909
BarI	GAAGNNNNNNTAC	2 cut(s)	785, 817
BbsI	GAAGAC	1 cut(s)	954
Bbv12I	GWGCWC	2 cut(s)	356, 909
BbvCI	CCTCAGC	1 cut(s)	726
BbvI	GCAGC	2 cut(s)	476, 799
BccI	CCATC	3 cut(s)	409, 518, 590
BciT130I	CCWGG	3 cut(s)	192, 806, 945
BclI	TGATCA	2 cut(s)	771, 967
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	1 cut(s)	659
BfmI	CTRYAG	2 cut(s)	672, 816
BfrI	CTTAAG	1 cut(s)	335
BfuAI	ACCTGC	1 cut(s)	943
BisI	GCNGC	2 cut(s)	490, 813
BlsI	GCNGC	2 cut(s)	491, 814
Bme1390I	CCNGG	3 cut(s)	192, 806, 945
Bme18I	GGWCC	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	3 cut(s)	432, 528, 717
BmiI	GGNNCC	7 cut(s)	85, 433, 434, 529, 562, 687, 765
BmrFI	CCNGG	3 cut(s)	192, 806, 945
BmsI	GCATC	2 cut(s)	349, 476
BpiI	GAAGAC	1 cut(s)	954
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BpmI	CTGGAG	2 cut(s)	174, 927
Bpu10I	CCTNAGC	1 cut(s)	726
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 441, 760
Bse1I	ACTGG	1 cut(s)	687
Bse3DI	GCAATG	1 cut(s)	246
BseBI	CCWGG	3 cut(s)	192, 806, 945
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	2 cut(s)	491, 601
BseLI	CCNNNNNNNGG	3 cut(s)	392, 441, 760
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	3 cut(s)	362, 369, 740
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	2 cut(s)	476, 799
BsgI	GTGCAG	2 cut(s)	300, 921
BshFI	GGCC	4 cut(s)	461, 530, 670, 719
BshNI	GGYRCC	2 cut(s)	560, 685
BsiHKAI	GWGCWC	2 cut(s)	356, 909
BsiHKCI	CYCGRG	1 cut(s)	581
BslFI	GGGAC	3 cut(s)	445, 872, 928
BslI	CCNNNNNNNGG	3 cut(s)	392, 441, 760
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	3 cut(s)	445, 872, 928
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	4 cut(s)	461, 530, 670, 719
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	2 cut(s)	356, 909
Bsp143I	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
BspACI	CCGC	3 cut(s)	104, 242, 853
BspANI	GGCC	4 cut(s)	461, 530, 670, 719
BspCNI	CTCAG	3 cut(s)	361, 368, 739
BspLI	GGNNCC	7 cut(s)	85, 433, 434, 529, 562, 687, 765
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	4 cut(s)	452, 758, 771, 795
BspT107I	GGYRCC	2 cut(s)	560, 685
BspTI	CTTAAG	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	3 cut(s)	192, 806, 945
Bst4CI	ACNGT	1 cut(s)	91
Bst6I	CTCTTC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	335
BstC8I	GCNNGC	2 cut(s)	375, 494
BstDEI	CTNAG	5 cut(s)	348, 355, 706, 726, 920
BstF5I	GGATG	2 cut(s)	491, 601
BstKTI	GATC	6 cut(s)	447, 743, 766, 774, 790, 970
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	486, 527, 818
BstNI	CCWGG	3 cut(s)	192, 806, 945
BstSCI	CCNGG	3 cut(s)	190, 804, 943
BstSFI	CTRYAG	2 cut(s)	672, 816
BstV1I	GCAGC	2 cut(s)	476, 799
BstV2I	GAAGAC	1 cut(s)	954
BstX2I	RGATCY	2 cut(s)	763, 787
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	2 cut(s)	763, 787
BsuRI	GGCC	4 cut(s)	461, 530, 670, 719
BtsCI	GGATG	2 cut(s)	491, 601
BtsIMutI	CAGTG	1 cut(s)	970
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	2 cut(s)	375, 494
Cfr13I	GGNCC	3 cut(s)	432, 528, 717
CsiI	ACCWGGT	1 cut(s)	804
Csp6I	GTAC	4 cut(s)	95, 325, 641, 802
CviAII	CATG	7 cut(s)	66, 118, 441, 457, 714, 721, 769
CviQI	GTAC	4 cut(s)	95, 325, 641, 802
DdeI	CTNAG	5 cut(s)	348, 355, 706, 726, 920
DpnI	GATC	6 cut(s)	446, 742, 765, 773, 789, 969
DpnII	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
DraIII	CACNNNGTG	2 cut(s)	278, 760
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	2 cut(s)	354, 907
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	670
Eco24I	GRGCYC	2 cut(s)	356, 909
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	2 cut(s)	354, 907
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	581
EcoICRI	GAGCTC	2 cut(s)	354, 907
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	3 cut(s)	190, 804, 943
EcoT14I	CCWWGG	1 cut(s)	564
EcoT38I	GRGCYC	2 cut(s)	356, 909
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	7 cut(s)	69, 121, 444, 460, 717, 724, 772
FaqI	GGGAC	3 cut(s)	445, 872, 928
FatI	CATG	7 cut(s)	65, 117, 440, 456, 713, 720, 768
FauI	CCCGC	1 cut(s)	111
FbaI	TGATCA	2 cut(s)	771, 967
FblI	GTMKAC	2 cut(s)	51, 122
Fnu4HI	GCNGC	2 cut(s)	490, 813
FokI	GGATG	2 cut(s)	498, 608
FriOI	GRGCYC	2 cut(s)	356, 909
Fsp4HI	GCNGC	2 cut(s)	490, 813
FspBI	CTAG	1 cut(s)	659
GluI	GCNGC	2 cut(s)	490, 813
GsuI	CTGGAG	2 cut(s)	174, 927
HaeIII	GGCC	4 cut(s)	461, 530, 670, 719
Hin1II	CATG	7 cut(s)	69, 121, 444, 460, 717, 724, 772
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	4 cut(s)	5, 142, 551, 746
HinfI	GANTC	2 cut(s)	227, 959
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	3 cut(s)	52, 123, 606
Hpy188I	TCNGA	6 cut(s)	351, 358, 502, 792, 911, 967
Hpy188III	TCNNGA	2 cut(s)	483, 581
Hpy8I	GTNNAC	3 cut(s)	52, 123, 606
HpyAV	CCTTC	4 cut(s)	193, 206, 361, 660
HpyCH4III	ACNGT	1 cut(s)	91
HpyCH4V	TGCA	6 cut(s)	269, 281, 492, 835, 877, 938
HpyF10VI	GCNNNNNNNGC	3 cut(s)	486, 527, 818
HpyF3I	CTNAG	5 cut(s)	348, 355, 706, 726, 920
Hsp92II	CATG	7 cut(s)	69, 121, 444, 460, 717, 724, 772
KflI	GGGWCCC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	771, 967
Kzo9I	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
LmnI	GCTCC	4 cut(s)	83, 370, 583, 649
Lsp1109I	GCAGC	2 cut(s)	476, 799
LweI	GCATC	2 cut(s)	349, 476
MabI	ACCWGGT	1 cut(s)	804
MaeI	CTAG	1 cut(s)	659
MaeIII	GTNAC	5 cut(s)	259, 291, 709, 848, 925
MalI	GATC	6 cut(s)	446, 742, 765, 773, 789, 969
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
MboII	GAAGA	4 cut(s)	105, 122, 675, 954
MfeI	CAATTG	1 cut(s)	162
MflI	RGATCY	2 cut(s)	763, 787
MhlI	GDGCHC	2 cut(s)	356, 909
MluCI	AATT	5 cut(s)	28, 162, 195, 398, 403
MlyI	GAGTC	1 cut(s)	968
MmeI	TCCRAC	2 cut(s)	61, 400
MnlI	CCTC	7 cut(s)	138, 263, 446, 735, 900, 905, 951
MseI	TTAA	2 cut(s)	336, 453
MslI	CAYNNNNRTG	3 cut(s)	298, 413, 455
MspCI	CTTAAG	1 cut(s)	335
MspR9I	CCNGG	3 cut(s)	192, 806, 945
MunI	CAATTG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	3 cut(s)	192, 806, 945
MwoI	GCNNNNNNNGC	3 cut(s)	486, 527, 818
NdeII	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
NlaIII	CATG	7 cut(s)	69, 121, 444, 460, 717, 724, 772
NlaIV	GGNNCC	7 cut(s)	85, 433, 434, 529, 562, 687, 765
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	3 cut(s)	259, 291, 709
OliI	CACNNNNGTG	1 cut(s)	298
PceI	AGGCCT	1 cut(s)	670
PctI	GAATGC	1 cut(s)	877
PfeI	GAWTC	1 cut(s)	227
PflMI	CCANNNNNTGG	1 cut(s)	760
PfoI	TCCNGGA	2 cut(s)	190, 943
PkrI	GCNGC	2 cut(s)	491, 814
PleI	GAGTC	1 cut(s)	967
PpsI	GAGTC	1 cut(s)	967
PpuMI	RGGWCCY	1 cut(s)	432
Psp124BI	GAGCTC	2 cut(s)	356, 909
Psp5II	RGGWCCY	1 cut(s)	432
Psp6I	CCWGG	3 cut(s)	190, 804, 943
PspGI	CCWGG	3 cut(s)	190, 804, 943
PspN4I	GGNNCC	7 cut(s)	85, 433, 434, 529, 562, 687, 765
PspPI	GGNCC	3 cut(s)	432, 528, 717
PspPPI	RGGWCCY	1 cut(s)	432
PsuI	RGATCY	2 cut(s)	763, 787
RsaI	GTAC	4 cut(s)	96, 326, 642, 803
RsaNI	GTAC	4 cut(s)	95, 325, 641, 802
RseI	CAYNNNNRTG	3 cut(s)	298, 413, 455
SacI	GAGCTC	2 cut(s)	356, 909
SaqAI	TTAA	2 cut(s)	336, 453
SatI	GCNGC	2 cut(s)	490, 813
Sau3AI	GATC	6 cut(s)	444, 740, 763, 771, 787, 967
Sau96I	GGNCC	3 cut(s)	432, 528, 717
SchI	GAGTC	1 cut(s)	968
ScrFI	CCNGG	3 cut(s)	192, 806, 945
SduI	GDGCHC	2 cut(s)	356, 909
SexAI	ACCWGGT	1 cut(s)	804
SfaNI	GCATC	2 cut(s)	349, 476
SfcI	CTRYAG	2 cut(s)	672, 816
SinI	GGWCC	1 cut(s)	432
SmiMI	CAYNNNNRTG	3 cut(s)	298, 413, 455
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	28, 162, 195, 398, 403
SseBI	AGGCCT	1 cut(s)	670
SsiI	CCGC	3 cut(s)	104, 242, 853
SspMI	CTAG	1 cut(s)	659
SstI	GAGCTC	2 cut(s)	356, 909
StuI	AGGCCT	1 cut(s)	670
StyD4I	CCNGG	3 cut(s)	190, 804, 943
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	1 cut(s)	91
TaqI	TCGA	1 cut(s)	903
TaqII	GACCGA	1 cut(s)	753
TasI	AATT	5 cut(s)	28, 162, 195, 398, 403
TatI	WGTACW	2 cut(s)	324, 640
TfiI	GAWTC	1 cut(s)	227
Tru1I	TTAA	2 cut(s)	336, 453
Tru9I	TTAA	2 cut(s)	336, 453
TseFI	GTSAC	3 cut(s)	259, 291, 709
TseI	GCWGC	2 cut(s)	489, 812
Tsp45I	GTSAC	3 cut(s)	259, 291, 709
TspDTI	ATGAA	3 cut(s)	17, 159, 486
TspGWI	ACGGA	1 cut(s)	623
Van91I	CCANNNNNTGG	1 cut(s)	760
Vha464I	CTTAAG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	3 cut(s)	28, 195, 398
XmiI	GTMKAC	2 cut(s)	51, 122
XspI	CTAG	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.