Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0023483

Physical Location & Seq

Genomic Coordinates Reverse (-)

61712676 .. 61714471

Gene Structure 1796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG388500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCCTATGCGAATGAAAATTGCTCTGGATGCTGCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTATGCCAACTAAACTTGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTGAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACAGATGTTTTGCATTCTCTTGTCCCTCTTGTTCCTGTCGAGCTCGGAGGGACACTTAGAGTTACACAACCTGCACCTCCAGGAAACCCCCAAGAGTCTTCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

138

Amino Acids

14.82

Weight (kDa)

5.41

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023483)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG246400 Rh6BG388500 Rh6CG393900 Rh6DG380500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	202
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	3 cut(s)	200, 213, 237
AcuI	CTGAAG	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	202
AjnI	CCWGG	2 cut(s)	246, 385
AluBI	AGCT	6 cut(s)	40, 97, 172, 190, 263, 349
AluI	AGCT	6 cut(s)	40, 97, 172, 190, 263, 349
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	3 cut(s)	200, 213, 237
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	3, 72
ApeKI	GCWGC	2 cut(s)	33, 254
AspS9I	GGNCC	1 cut(s)	72
AvaI	CYCGRG	1 cut(s)	125
BamHI	GGATCC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	351
BbvCI	CCTCAGC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	20, 241
BccI	CCATC	2 cut(s)	62, 134
BciT130I	CCWGG	2 cut(s)	248, 387
BclI	TGATCA	2 cut(s)	213, 409
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	34, 255
BlsI	GCNGC	2 cut(s)	35, 256
Bme1390I	CCNGG	2 cut(s)	248, 387
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	73, 106, 207
BmrFI	CCNGG	2 cut(s)	248, 387
BmsI	GCATC	1 cut(s)	20
BpiI	GAAGAC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseBI	CCWGG	2 cut(s)	248, 387
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	2 cut(s)	35, 145
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	20, 241
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	2 cut(s)	5, 74
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	351
BsiHKCI	CYCGRG	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	314, 370
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	314, 370
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	5, 74
BsoBI	CYCGRG	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	182, 205, 213, 229, 409
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	5, 74
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	73, 106, 207
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	3 cut(s)	200, 213, 237
BspT107I	GGYRCC	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	5 cut(s)	182, 205, 213, 229, 409
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	248, 387
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	2 cut(s)	168, 362
BstF5I	GGATG	2 cut(s)	35, 145
BstKTI	GATC	5 cut(s)	185, 208, 216, 232, 412
BstMBI	GATC	5 cut(s)	182, 205, 213, 229, 409
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 71, 260
BstNI	CCWGG	2 cut(s)	248, 387
BstSCI	CCNGG	2 cut(s)	246, 385
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	20, 241
BstV2I	GAAGAC	1 cut(s)	396
BstX2I	RGATCY	2 cut(s)	205, 229
BstYI	RGATCY	2 cut(s)	205, 229
BsuRI	GGCC	2 cut(s)	5, 74
BtsCI	GGATG	2 cut(s)	35, 145
BtsIMutI	CAGTG	1 cut(s)	412
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	72
CsiI	ACCWGGT	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	2 cut(s)	163, 211
CviJI	RGCY	9 cut(s)	5, 40, 65, 74, 97, 172, 190, 263, 349
CviKI_1	RGCY	9 cut(s)	5, 40, 65, 74, 97, 172, 190, 263, 349
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	168, 362
DpnI	GATC	5 cut(s)	184, 207, 215, 231, 411
DpnII	GATC	5 cut(s)	182, 205, 213, 229, 409
DraIII	CACNNNGTG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	349
EcoRII	CCWGG	2 cut(s)	246, 385
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	166, 214
FaiI	YATR	6 cut(s)	9, 117, 146, 164, 212, 271
FaqI	GGGAC	2 cut(s)	314, 370
FatI	CATG	2 cut(s)	162, 210
FbaI	TGATCA	2 cut(s)	213, 409
Fnu4HI	GCNGC	2 cut(s)	34, 255
FokI	GGATG	2 cut(s)	42, 152
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	2 cut(s)	34, 255
GluI	GCNGC	2 cut(s)	34, 255
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	5, 74
Hin1II	CATG	2 cut(s)	166, 214
HindIII	AAGCTT	2 cut(s)	95, 188
HinfI	GANTC	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	46, 234, 353, 409
Hpy188III	TCNNGA	2 cut(s)	27, 125
HpyCH4V	TGCA	4 cut(s)	36, 277, 319, 380
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 71, 260
HpyF3I	CTNAG	2 cut(s)	168, 362
Hsp92II	CATG	2 cut(s)	166, 214
Ksp22I	TGATCA	2 cut(s)	213, 409
Kzo9I	GATC	5 cut(s)	182, 205, 213, 229, 409
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	8 cut(s)	12, 87, 233, 260, 354, 372, 390, 399
Lsp1109I	GCAGC	2 cut(s)	20, 241
LweI	GCATC	1 cut(s)	20
MabI	ACCWGGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	290, 367
MalI	GATC	5 cut(s)	184, 207, 215, 231, 411
MboI	GATC	5 cut(s)	182, 205, 213, 229, 409
MboII	GAAGA	1 cut(s)	396
MflI	RGATCY	2 cut(s)	205, 229
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	410
MnlI	CCTC	4 cut(s)	177, 342, 347, 393
MspR9I	CCNGG	2 cut(s)	248, 387
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	2 cut(s)	248, 387
MwoI	GCNNNNNNNGC	3 cut(s)	30, 71, 260
NdeII	GATC	5 cut(s)	182, 205, 213, 229, 409
NlaIII	CATG	2 cut(s)	166, 214
NlaIV	GGNNCC	3 cut(s)	73, 106, 207
PctI	GAATGC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	35, 256
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	2 cut(s)	246, 385
PspGI	CCWGG	2 cut(s)	246, 385
PspN4I	GGNNCC	3 cut(s)	73, 106, 207
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	205, 229
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	351
SatI	GCNGC	2 cut(s)	34, 255
Sau3AI	GATC	5 cut(s)	182, 205, 213, 229, 409
Sau96I	GGNCC	1 cut(s)	72
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	2 cut(s)	248, 387
SduI	GDGCHC	1 cut(s)	351
SexAI	ACCWGGT	1 cut(s)	246
SfaNI	GCATC	1 cut(s)	20
SfcI	CTRYAG	1 cut(s)	258
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	295
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	2 cut(s)	246, 385
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	19
TseI	GCWGC	2 cut(s)	33, 254
TspDTI	ATGAA	1 cut(s)	30
Van91I	CCANNNNNTGG	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.