Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0023483

Physical Location & Seq

Genomic Coordinates Reverse (-)

58172639 .. 58175657

Gene Structure 3019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG393900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCTGCTCCTCTTCCCCCACCAAGCTTCTCACCCACTTCCCCAATTGCTTCATCAATGGCTTCCTTCTCTCCAGGAATTCAACAAGGAAGTGAAGGGAATCAAATGGATCCGCATAAGAAACCGCTCATTGCCCTCATTGTGACTTGTGCAACACTTGGTGCAGTTTTGTTGTCACTATTGTGTTTGTGGTTTTATCACAGGAAGTACAAGTTCCTTAAGAGAAATGCTCAGAGCTCAGGACCCTCTCATGGATCGGCATTAACATGGCCTATGCGAATGAAAATCGCTCTGGATGCTGCAAGAGGATTAGAGTATTTGCATGAGTACTGCAACCCTCCAGTGATCCATAGAGATCTGAAAACATCTAATATTCTTTTGGATGCCAACTTCAATGCCAAGCTCTCTGATTTTGGTCTTGCTGTGGCTGATGGGGCCAAAAACAATAATAACATCAAGCTTTCTGGCACCTTGGGTTATGTTGCTCCCGAGTATCTTTTGGATGGTAAGTTGACGGACAAGAGTGATGTCTATGCTTTTGGAGTTGTACTTTTGGAGCTTCTACTAGGAAGAAGGCCTGTAGAAAAACTGGCACCAACTCAATGCCAATCCTTAGTCACATGGGCCATGCCTCAGCTTACTGACCGATCAAAGCTTCCCCACATTGTGGATCCCATGATCAAAGATACAATGGATCTAAAGCACTTGTACCAGGTTGCTGCTGTAGCTGTGTTATGTGTGCAACCCGAACCAAGTTACCGCCCACTAATAACAGATGTTTTGCATTCCCTTGTCCCTCTTGTTCCTGTCGAGCTCGGAGGGACACTTAGAGTTACACAAGCTGCACCTCCAGGAAACCCCCAAGAGTCTTCTGATCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

31.89

Weight (kDa)

8.22

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	71 - 229	1.4e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	95 - 215	6e-26	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023483)

Species	Orthologous Gene IDs
rosa_samantha	Rh2AG246400 Rh6BG388500 Rh6CG393900 Rh6DG380500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	467, 592
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccBSI	CCGCTC	1 cut(s)	127
AciI	CCGC	3 cut(s)	113, 125, 760
AclWI	GGATC	7 cut(s)	104, 117, 262, 340, 665, 678, 702
AcsI	RAATTY	1 cut(s)	78
AdeI	CACNNNGTG	2 cut(s)	161, 667
AfaI	GTAC	4 cut(s)	209, 329, 549, 710
AfiI	CCNNNNNNNGG	2 cut(s)	251, 667
AflII	CTTAAG	1 cut(s)	218
AgsI	TTSAA	2 cut(s)	83, 394
AjnI	CCWGG	3 cut(s)	73, 711, 850
AleI	CACNNNNGTG	1 cut(s)	181
Alw21I	GWGCWC	2 cut(s)	239, 816
AlwI	GGATC	7 cut(s)	104, 117, 262, 340, 665, 678, 702
Ama87I	CYCGRG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	269, 435, 575, 624
ApeKI	GCWGC	3 cut(s)	299, 719, 842
ApoI	RAATTY	1 cut(s)	78
AspS9I	GGNCC	3 cut(s)	242, 435, 624
AsuHPI	GGTGA	1 cut(s)	24
AvaI	CYCGRG	1 cut(s)	488
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	2 cut(s)	109, 670
BanI	GGYRCC	2 cut(s)	467, 592
BanII	GRGCYC	2 cut(s)	239, 816
BbsI	GAAGAC	1 cut(s)	861
Bbv12I	GWGCWC	2 cut(s)	239, 816
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	3 cut(s)	286, 706, 829
BccI	CCATC	2 cut(s)	425, 497
BciT130I	CCWGG	3 cut(s)	75, 713, 852
BclI	TGATCA	2 cut(s)	678, 874
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	2 cut(s)	579, 723
BfrI	CTTAAG	1 cut(s)	218
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	300, 720, 843
BlsI	GCNGC	3 cut(s)	301, 721, 844
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	75, 713, 852
Bme18I	GGWCC	1 cut(s)	242
BmeT110I	CYCGRG	1 cut(s)	488
BmgT120I	GGNCC	3 cut(s)	242, 435, 624
BmiI	GGNNCC	6 cut(s)	111, 244, 436, 469, 594, 672
BmrFI	CCNGG	3 cut(s)	75, 713, 852
BmsI	GCATC	2 cut(s)	286, 373
BpiI	GAAGAC	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpmI	CTGGAG	3 cut(s)	57, 324, 834
Bpu10I	CCTNAGC	2 cut(s)	238, 633
BsaJI	CCNNGG	1 cut(s)	471
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 667
Bse1I	ACTGG	2 cut(s)	341, 594
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	3 cut(s)	75, 713, 852
BseDI	CCNNGG	1 cut(s)	471
BseGI	GGATG	3 cut(s)	301, 388, 508
BseLI	CCNNNNNNNGG	2 cut(s)	251, 667
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	3 cut(s)	245, 252, 647
BseNI	ACTGG	2 cut(s)	341, 594
BseXI	GCAGC	3 cut(s)	286, 706, 829
BsgI	GTGCAG	2 cut(s)	183, 828
BshFI	GGCC	4 cut(s)	271, 437, 577, 626
BshNI	GGYRCC	2 cut(s)	467, 592
BsiHKAI	GWGCWC	2 cut(s)	239, 816
BsiHKCI	CYCGRG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	779, 835
BslI	CCNNNNNNNGG	2 cut(s)	251, 667
BsmFI	GGGAC	2 cut(s)	779, 835
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	4 cut(s)	271, 437, 577, 626
BsoBI	CYCGRG	1 cut(s)	488
Bsp1286I	GDGCHC	2 cut(s)	239, 816
Bsp143I	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
BspACI	CCGC	3 cut(s)	113, 125, 760
BspANI	GGCC	4 cut(s)	271, 437, 577, 626
BspCNI	CTCAG	3 cut(s)	244, 251, 646
BspLI	GGNNCC	6 cut(s)	111, 244, 436, 469, 594, 672
BspPI	GGATC	7 cut(s)	104, 117, 262, 340, 665, 678, 702
BspT107I	GGYRCC	2 cut(s)	467, 592
BspTI	CTTAAG	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	129
BsrI	ACTGG	2 cut(s)	341, 594
BssECI	CCNNGG	1 cut(s)	471
BssMI	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
BssT1I	CCWWGG	1 cut(s)	471
Bst2UI	CCWGG	3 cut(s)	75, 713, 852
Bst6I	CTCTTC	1 cut(s)	18
BstAFI	CTTAAG	1 cut(s)	218
BstDEI	CTNAG	5 cut(s)	231, 238, 613, 633, 827
BstF5I	GGATG	3 cut(s)	301, 388, 508
BstKTI	GATC	9 cut(s)	112, 257, 348, 358, 650, 673, 681, 697, 877
BstMBI	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 434, 725
BstNI	CCWGG	3 cut(s)	75, 713, 852
BstSCI	CCNGG	3 cut(s)	73, 711, 850
BstSFI	CTRYAG	2 cut(s)	579, 723
BstV1I	GCAGC	3 cut(s)	286, 706, 829
BstV2I	GAAGAC	1 cut(s)	861
BstX2I	RGATCY	4 cut(s)	109, 355, 670, 694
BstYI	RGATCY	4 cut(s)	109, 355, 670, 694
BsuRI	GGCC	4 cut(s)	271, 437, 577, 626
BtsCI	GGATG	3 cut(s)	301, 388, 508
BtsIMutI	CAGTG	2 cut(s)	348, 877
Cfr13I	GGNCC	3 cut(s)	242, 435, 624
CsiI	ACCWGGT	1 cut(s)	711
Csp6I	GTAC	4 cut(s)	208, 328, 548, 709
CviAII	CATG	6 cut(s)	251, 267, 323, 621, 628, 676
CviQI	GTAC	4 cut(s)	208, 328, 548, 709
DdeI	CTNAG	5 cut(s)	231, 238, 613, 633, 827
DpnI	GATC	9 cut(s)	111, 256, 347, 357, 649, 672, 680, 696, 876
DpnII	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
DraIII	CACNNNGTG	2 cut(s)	161, 667
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Ecl136II	GAGCTC	2 cut(s)	237, 814
Eco130I	CCWWGG	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	577
Eco24I	GRGCYC	2 cut(s)	239, 816
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	2 cut(s)	237, 814
Eco88I	CYCGRG	1 cut(s)	488
EcoICRI	GAGCTC	2 cut(s)	237, 814
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	78
EcoRII	CCWGG	3 cut(s)	73, 711, 850
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	239, 816
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	6 cut(s)	254, 270, 326, 624, 631, 679
FaqI	GGGAC	2 cut(s)	779, 835
FatI	CATG	6 cut(s)	250, 266, 322, 620, 627, 675
FbaI	TGATCA	2 cut(s)	678, 874
Fnu4HI	GCNGC	3 cut(s)	300, 720, 843
FokI	GGATG	3 cut(s)	308, 395, 515
FriOI	GRGCYC	2 cut(s)	239, 816
Fsp4HI	GCNGC	3 cut(s)	300, 720, 843
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	3 cut(s)	300, 720, 843
GsuI	CTGGAG	3 cut(s)	57, 324, 834
HaeIII	GGCC	4 cut(s)	271, 437, 577, 626
Hin1II	CATG	6 cut(s)	254, 270, 326, 624, 631, 679
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	3 cut(s)	25, 458, 653
HinfI	GANTC	2 cut(s)	100, 866
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	513
Hpy188I	TCNGA	5 cut(s)	234, 360, 409, 818, 874
Hpy188III	TCNNGA	3 cut(s)	240, 293, 488
Hpy8I	GTNNAC	1 cut(s)	513
HpyAV	CCTTC	3 cut(s)	76, 89, 567
HpyCH4V	TGCA	8 cut(s)	152, 164, 302, 322, 333, 742, 784, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 434, 725
HpyF3I	CTNAG	5 cut(s)	231, 238, 613, 633, 827
Hsp92II	CATG	6 cut(s)	254, 270, 326, 624, 631, 679
Ksp22I	TGATCA	2 cut(s)	678, 874
Kzo9I	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
LmnI	GCTCC	3 cut(s)	13, 490, 556
Lsp1109I	GCAGC	3 cut(s)	286, 706, 829
LweI	GCATC	2 cut(s)	286, 373
MabI	ACCWGGT	1 cut(s)	711
MaeI	CTAG	1 cut(s)	566
MaeIII	GTNAC	5 cut(s)	142, 174, 616, 755, 832
MalI	GATC	9 cut(s)	111, 256, 347, 357, 649, 672, 680, 696, 876
MbiI	CCGCTC	1 cut(s)	127
MboI	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
MboII	GAAGA	3 cut(s)	5, 582, 861
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	4 cut(s)	109, 355, 670, 694
MhlI	GDGCHC	2 cut(s)	239, 816
MluCI	AATT	2 cut(s)	45, 78
MlyI	GAGTC	1 cut(s)	875
MnlI	CCTC	9 cut(s)	21, 146, 256, 299, 348, 642, 807, 812, 858
MseI	TTAA	2 cut(s)	219, 263
MslI	CAYNNNNRTG	2 cut(s)	181, 265
MspCI	CTTAAG	1 cut(s)	218
MspR9I	CCNGG	3 cut(s)	75, 713, 852
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	3 cut(s)	75, 713, 852
MwoI	GCNNNNNNNGC	3 cut(s)	296, 434, 725
NdeII	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
NlaIII	CATG	6 cut(s)	254, 270, 326, 624, 631, 679
NlaIV	GGNNCC	6 cut(s)	111, 244, 436, 469, 594, 672
NmuCI	GTSAC	3 cut(s)	142, 174, 616
OliI	CACNNNNGTG	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	577
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	1 cut(s)	100
PflMI	CCANNNNNTGG	1 cut(s)	667
PfoI	TCCNGGA	2 cut(s)	73, 850
PkrI	GCNGC	3 cut(s)	301, 721, 844
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
PpuMI	RGGWCCY	1 cut(s)	242
Psp124BI	GAGCTC	2 cut(s)	239, 816
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	3 cut(s)	73, 711, 850
PspGI	CCWGG	3 cut(s)	73, 711, 850
PspN4I	GGNNCC	6 cut(s)	111, 244, 436, 469, 594, 672
PspPI	GGNCC	3 cut(s)	242, 435, 624
PspPPI	RGGWCCY	1 cut(s)	242
PsuI	RGATCY	4 cut(s)	109, 355, 670, 694
RsaI	GTAC	4 cut(s)	209, 329, 549, 710
RsaNI	GTAC	4 cut(s)	208, 328, 548, 709
RseI	CAYNNNNRTG	2 cut(s)	181, 265
SacI	GAGCTC	2 cut(s)	239, 816
SaqAI	TTAA	2 cut(s)	219, 263
SatI	GCNGC	3 cut(s)	300, 720, 843
Sau3AI	GATC	9 cut(s)	109, 254, 345, 355, 647, 670, 678, 694, 874
Sau96I	GGNCC	3 cut(s)	242, 435, 624
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	1 cut(s)	875
ScrFI	CCNGG	3 cut(s)	75, 713, 852
SduI	GDGCHC	2 cut(s)	239, 816
SexAI	ACCWGGT	1 cut(s)	711
SfaNI	GCATC	2 cut(s)	286, 373
SfcI	CTRYAG	2 cut(s)	579, 723
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	181, 265
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	45, 78
SseBI	AGGCCT	1 cut(s)	577
SsiI	CCGC	3 cut(s)	113, 125, 760
SspI	AATATT	1 cut(s)	373
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	2 cut(s)	239, 816
StuI	AGGCCT	1 cut(s)	577
StyD4I	CCNGG	3 cut(s)	73, 711, 850
StyI	CCWWGG	1 cut(s)	471
TaqI	TCGA	1 cut(s)	810
TaqII	GACCGA	1 cut(s)	660
TasI	AATT	2 cut(s)	45, 78
TatI	WGTACW	3 cut(s)	207, 327, 547
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	219, 263
Tru9I	TTAA	2 cut(s)	219, 263
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	3 cut(s)	142, 174, 616
TseI	GCWGC	3 cut(s)	299, 719, 842
Tsp45I	GTSAC	3 cut(s)	142, 174, 616
TspDTI	ATGAA	2 cut(s)	42, 296
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	667
Vha464I	CTTAAG	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	78
XspI	CTAG	1 cut(s)	566
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.