Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021338

Physical Location & Seq

Genomic Coordinates Forward (+)

47951398 .. 47952626

Gene Structure 1229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGTCGCCATCGAGCAGGGTTGAGGATGGGAGTCTGGAGTTCTCCTCCGAGAACTCCTCATTCCAGTGGTACCAGCGAAGCGGCTCCTGCAAGATGGCCTCGAGTTTGCCCTGCGGAGGATTTGAATACGCCGCTTTGAGAATGCCTCTTGAAGTTCCAGAAAAAAGTGTAGAGGTGGTTCCGAAAGTGCATAATGAAGTTCCTATAAGCTTAGAACAGTCGAAAGCTAAGCCGACTAAGGCCAAAAGGCGTGCTCTGCAGGAGGCTCAACGTGCTGCGAAAGTCGCCGCTAAAGCTAAGGGAAGAAAACCTACCCCTGTATCTGGAGGAGGAGCTACAAGTAAACCTGTAAAGCAGTCTTCCCAAAAGAAAGAGATGCAAAAGAAAGATACTCCTGCTATTGCATCTTCAGTGGTTGCTTCTGACAAGAAGGGTGGTGATCGACCAACAAATAGGAGGAAAGATGTTCCTCCTCCACGTATGCAGTTTGATGATAAGAGCCGAGTGGAAAAGGCAAAAAGGCGTGCTGTGGTCAATCAAACAGAAGCTAAAAACAGAGTTGAATTGTTCCGGCATCTACCTCAATATGAACGAGGAACTCAGCTTCCAGATCTCGAGTCAAAGTTTTTTCAACTTGATCTTCAAGGTCAATGTGAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

220

Amino Acids

24.4

Weight (kDa)

9.84

Isoelectric Point (pI)

65.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021338)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112331
rosa_samantha	Rh2AG331700 Rh2BG246500 Rh2BG340000 Rh2CG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AciI	CCGC	4 cut(s)	81, 114, 132, 288
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	2 cut(s)	116, 323
AgsI	TTSAA	5 cut(s)	125, 152, 563, 632, 644
AloI	GAACNNNNNNTCC	2 cut(s)	589, 621
AluBI	AGCT	6 cut(s)	210, 227, 296, 335, 548, 604
AluI	AGCT	6 cut(s)	210, 227, 296, 335, 548, 604
Alw21I	GWGCWC	1 cut(s)	256
Ama87I	CYCGRG	2 cut(s)	100, 614
AoxI	GGCC	2 cut(s)	96, 240
ApeKI	GCWGC	1 cut(s)	275
Asp718I	GGTACC	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	449
AvaI	CYCGRG	2 cut(s)	100, 614
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanI	GGYRCC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	2 cut(s)	295, 327
BbsI	GAAGAC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	3 cut(s)	16, 20, 88
BfmI	CTRYAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	610
BisI	GCNGC	4 cut(s)	82, 132, 276, 288
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	4 cut(s)	83, 133, 277, 289
BmeT110I	CYCGRG	2 cut(s)	100, 614
BmiI	GGNNCC	3 cut(s)	71, 85, 180
BmsI	GCATC	3 cut(s)	366, 413, 583
BpiI	GAAGAC	1 cut(s)	351
BplI	GAGNNNNNCTC	6 cut(s)	29, 61, 41, 73, 130, 162
BpmI	CTGGAG	2 cut(s)	56, 345
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu1102I	GCTNAGC	1 cut(s)	228
BsaAI	YACGTR	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 323
Bse1I	ACTGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	116, 323
BseMII	CTCAG	1 cut(s)	614
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	5 cut(s)	34, 46, 342, 345, 462
BseXI	GCAGC	1 cut(s)	262
BshFI	GGCC	2 cut(s)	98, 242
BshNI	GGYRCC	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	2 cut(s)	100, 614
BsiSI	CCGG	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	116, 323
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	98, 242
BsoBI	CYCGRG	2 cut(s)	100, 614
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	3 cut(s)	439, 610, 637
Bsp1720I	GCTNAGC	1 cut(s)	228
BspACI	CCGC	4 cut(s)	81, 114, 132, 288
BspANI	GGCC	2 cut(s)	98, 242
BspCNI	CTCAG	1 cut(s)	613
BspLI	GGNNCC	3 cut(s)	71, 85, 180
BspMAI	CTGCAG	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	439, 610, 637
Bst4CI	ACNGT	1 cut(s)	219
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	252, 525
BstDEI	CTNAG	5 cut(s)	211, 228, 237, 297, 600
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	442, 613, 640
BstMBI	GATC	3 cut(s)	439, 610, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	87, 256, 272, 284, 293
BstSFI	CTRYAG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	351
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuRI	GGCC	2 cut(s)	98, 242
BtsCI	GGATG	1 cut(s)	31
BtsIMutI	CAGTG	2 cut(s)	71, 417
Cac8I	GCNNGC	2 cut(s)	252, 525
Csp6I	GTAC	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	415, 450
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	5 cut(s)	211, 228, 237, 297, 600
DpnI	GATC	3 cut(s)	441, 612, 639
DpnII	GATC	3 cut(s)	439, 610, 637
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	100, 614
FaiI	YATR	4 cut(s)	192, 206, 482, 588
Fnu4HI	GCNGC	4 cut(s)	82, 132, 276, 288
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	82, 132, 276, 288
GluI	GCNGC	4 cut(s)	82, 132, 276, 288
GsuI	CTGGAG	2 cut(s)	56, 345
HaeIII	GGCC	2 cut(s)	98, 242
HapII	CCGG	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	2 cut(s)	31, 617
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	1 cut(s)	344
Hpy188I	TCNGA	3 cut(s)	49, 183, 424
Hpy188III	TCNNGA	6 cut(s)	35, 149, 158, 324, 608, 614
Hpy8I	GTNNAC	1 cut(s)	344
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	271, 478
HpyCH4V	TGCA	6 cut(s)	90, 190, 259, 379, 404, 484
HpyF10VI	GCNNNNNNNGC	5 cut(s)	87, 256, 272, 284, 293
HpyF3I	CTNAG	5 cut(s)	211, 228, 237, 297, 600
HpySE526I	ACGT	2 cut(s)	271, 478
KpnI	GGTACC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	439, 610, 637
LmnI	GCTCC	2 cut(s)	89, 332
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	3 cut(s)	366, 413, 583
MaeII	ACGT	2 cut(s)	271, 478
MalI	GATC	3 cut(s)	441, 612, 639
MboI	GATC	3 cut(s)	439, 610, 637
MboII	GAAGA	4 cut(s)	315, 351, 399, 632
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	256
MluCI	AATT	1 cut(s)	563
MlyI	GAGTC	2 cut(s)	40, 626
MslI	CAYNNNNRTG	1 cut(s)	64
MspI	CCGG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	147
MwoI	GCNNNNNNNGC	5 cut(s)	87, 256, 272, 284, 293
NdeII	GATC	3 cut(s)	439, 610, 637
NlaIV	GGNNCC	3 cut(s)	71, 85, 180
NmeAIII	GCCGAG	1 cut(s)	527
PaeR7I	CTCGAG	2 cut(s)	100, 614
PctI	GAATGC	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	83, 133, 277, 289
PleI	GAGTC	2 cut(s)	39, 625
PpsI	GAGTC	2 cut(s)	39, 625
Ppu21I	YACGTR	1 cut(s)	479
PspN4I	GGNNCC	3 cut(s)	71, 85, 180
PspXI	VCTCGAGB	1 cut(s)	100
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	64
SatI	GCNGC	4 cut(s)	82, 132, 276, 288
Sau3AI	GATC	3 cut(s)	439, 610, 637
SchI	GAGTC	2 cut(s)	40, 626
SduI	GDGCHC	1 cut(s)	256
SfaNI	GCATC	3 cut(s)	366, 413, 583
SfcI	CTRYAG	1 cut(s)	257
Sfr274I	CTCGAG	2 cut(s)	100, 614
SlaI	CTCGAG	2 cut(s)	100, 614
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	100, 614
SmoI	CTYRAG	2 cut(s)	100, 614
Sse9I	AATT	1 cut(s)	563
SsiI	CCGC	4 cut(s)	81, 114, 132, 288
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	2 cut(s)	274, 481
TaqI	TCGA	5 cut(s)	11, 101, 221, 442, 615
TasI	AATT	1 cut(s)	563
TauI	GCSGC	3 cut(s)	84, 134, 290
TscAI	CASTG	2 cut(s)	71, 417
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	210, 603
TspRI	CASTG	2 cut(s)	71, 417
XhoI	CTCGAG	2 cut(s)	100, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.