Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021338

Physical Location & Seq

Genomic Coordinates Reverse (-)

25094065 .. 25094534

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG246500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATCCCCCCCTCGCGTCACCTTTCCGACACCGTCGCCATCCGCACGGCCGCCGTGGCGGTTCCGGAATCGGCGATGCGGCGGATGGATTCCGACGAGCAAGTGCCGGTGGGGAGTTACAACCCGTCGGAGTCGTTGTTAGGGTCCTCTCCGGTGACCTTGTCGCCGTCGAGCAGGGTCGAGGATGGGACTCTGGAGTTCTCGGCCTCGGTGCAGTGGTACCGGCGAAGCGGCTCCGGCAAGATGGCCTGGAGTTTTCCCGGCGGAGGATTTGAATCCGCCGCTTTGAGAACGCCTCTTGAAGTTCCAGAAAAAAGTTCCTACAAGCTCAGAACAGTCGAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

115

Amino Acids

12.39

Weight (kDa)

5.8

Isoelectric Point (pI)

75.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021338)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112331
rosa_samantha	Rh2AG331700 Rh2BG246500 Rh2BG340000 Rh2CG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	219
AccB1I	GGYRCC	1 cut(s)	219
AccII	CGCG	1 cut(s)	16
AccIII	TCCGGA	1 cut(s)	64
AciI	CCGC	9 cut(s)	43, 51, 59, 79, 82, 231, 264, 279, 282
AcoI	YGGCCR	1 cut(s)	48
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	275, 302
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	2 cut(s)	328, 345
AluI	AGCT	2 cut(s)	328, 345
Aor13HI	TCCGGA	1 cut(s)	64
AoxI	GGCC	3 cut(s)	48, 204, 246
Asp718I	GGTACC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	11, 166
AvaII	GGWCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	219
BccI	CCATC	4 cut(s)	47, 79, 179, 238
BceAI	ACGGC	3 cut(s)	38, 63, 151
BciT130I	CCWGG	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	261
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	51, 80, 232, 282
BlsI	GCNGC	4 cut(s)	52, 81, 233, 283
Bme1390I	CCNGG	2 cut(s)	250, 261
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	4 cut(s)	63, 145, 221, 235
BmrFI	CCNGG	2 cut(s)	250, 261
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	2 cut(s)	215, 271
BpuMI	CCSGG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	54, 207
BsaWI	WCCGGW	2 cut(s)	64, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	2 cut(s)	106, 222
Bse8I	GATNNNNATC	1 cut(s)	274
BseAI	TCCGGA	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	54, 207
BseGI	GGATG	3 cut(s)	39, 90, 190
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	343
BseX3I	CGGCCG	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	16
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	3 cut(s)	50, 206, 248
BshNI	GGYRCC	1 cut(s)	219
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	6 cut(s)	65, 107, 152, 223, 237, 261
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	3 cut(s)	50, 206, 248
Bsp13I	TCCGGA	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	9 cut(s)	43, 51, 59, 79, 82, 231, 264, 279, 282
BspANI	GGCC	3 cut(s)	50, 206, 248
BspCNI	CTCAG	1 cut(s)	342
BspEI	TCCGGA	1 cut(s)	64
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	4 cut(s)	63, 145, 221, 235
BspT107I	GGYRCC	1 cut(s)	219
BsrFI	RCCGGY	2 cut(s)	106, 222
BssAI	RCCGGY	2 cut(s)	106, 222
BssECI	CCNNGG	2 cut(s)	54, 207
BssMI	GATC	1 cut(s)	3
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	34, 337
BstDEI	CTNAG	1 cut(s)	329
BstDSI	CCRYGG	1 cut(s)	54
BstEII	GGTNACC	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	39, 90, 190
BstFNI	CGCG	1 cut(s)	16
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 237
BstNI	CCWGG	1 cut(s)	250
BstPI	GGTNACC	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	248, 259
BstUI	CGCG	1 cut(s)	16
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	3 cut(s)	50, 206, 248
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	39, 90, 190
BtsI	GCAGTG	1 cut(s)	221
BtsIMutI	CAGTG	1 cut(s)	221
Cfr10I	RCCGGY	2 cut(s)	106, 222
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	5
Csp6I	GTAC	1 cut(s)	220
CviJI	RGCY	6 cut(s)	50, 206, 234, 248, 328, 345
CviKI_1	RGCY	6 cut(s)	50, 206, 234, 248, 328, 345
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EciI	GGCGGA	3 cut(s)	97, 268, 279
EclXI	CGGCCG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	144
Eco52I	CGGCCG	1 cut(s)	48
Eco91I	GGTNACC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	144
EcoO65I	GGTNACC	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	248
FaqI	GGGAC	1 cut(s)	202
Fnu4HI	GCNGC	4 cut(s)	51, 80, 232, 282
FokI	GGATG	3 cut(s)	26, 97, 197
Fsp4HI	GCNGC	4 cut(s)	51, 80, 232, 282
GluI	GCNGC	4 cut(s)	51, 80, 232, 282
GsuI	CTGGAG	2 cut(s)	215, 271
HaeIII	GGCC	3 cut(s)	50, 206, 248
HapII	CCGG	6 cut(s)	65, 107, 152, 223, 237, 261
HgaI	GACGC	1 cut(s)	5
HinfI	GANTC	5 cut(s)	68, 89, 131, 190, 275
HpaII	CCGG	6 cut(s)	65, 107, 152, 223, 237, 261
HphI	GGTGA	2 cut(s)	11, 166
Hpy188I	TCNGA	4 cut(s)	28, 94, 130, 332
Hpy188III	TCNNGA	4 cut(s)	65, 194, 299, 308
Hpy99I	CGWCG	4 cut(s)	38, 98, 130, 172
HpyCH4III	ACNGT	2 cut(s)	34, 337
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 237
HpyF3I	CTNAG	1 cut(s)	329
Kpn2I	TCCGGA	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	1 cut(s)	239
LweI	GCATC	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	17, 116, 154
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MlyI	GAGTC	2 cut(s)	140, 184
MmeI	TCCRAC	3 cut(s)	51, 108, 117
MnlI	CCTC	6 cut(s)	22, 157, 175, 217, 260, 306
MroI	TCCGGA	1 cut(s)	64
MspI	CCGG	6 cut(s)	65, 107, 152, 223, 237, 261
MspR9I	CCNGG	2 cut(s)	250, 261
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	56, 237
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	4 cut(s)	63, 145, 221, 235
NmeAIII	GCCGAG	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	17, 154
PfeI	GAWTC	3 cut(s)	68, 89, 275
PflFI	GACNNNGTC	2 cut(s)	32, 160
PkrI	GCNGC	4 cut(s)	52, 81, 233, 283
PleI	GAGTC	2 cut(s)	139, 184
PpsI	GAGTC	2 cut(s)	139, 184
PpuMI	RGGWCCY	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	248
PspEI	GGTNACC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	4 cut(s)	63, 145, 221, 235
PspPI	GGNCC	1 cut(s)	144
PspPPI	RGGWCCY	1 cut(s)	144
PsyI	GACNNNGTC	2 cut(s)	32, 160
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SatI	GCNGC	4 cut(s)	51, 80, 232, 282
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	144
SchI	GAGTC	2 cut(s)	140, 184
ScrFI	CCNGG	2 cut(s)	250, 261
SetI	ASST	4 cut(s)	24, 161, 330, 347
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	1 cut(s)	144
SsiI	CCGC	9 cut(s)	43, 51, 59, 79, 82, 231, 264, 279, 282
StyD4I	CCNGG	2 cut(s)	248, 259
TaaI	ACNGT	2 cut(s)	34, 337
TaqI	TCGA	3 cut(s)	170, 180, 339
TauI	GCSGC	4 cut(s)	53, 82, 234, 284
TfiI	GAWTC	3 cut(s)	68, 89, 275
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	2 cut(s)	17, 154
Tsp45I	GTSAC	2 cut(s)	17, 154
TspRI	CASTG	1 cut(s)	221
Tth111I	GACNNNGTC	2 cut(s)	32, 160
VpaK11BI	GGWCC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.