Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0021338

Physical Location & Seq

Genomic Coordinates Forward (+)

45303367 .. 45304005

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG340000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGACTCTGGAGTTCTCTCGAGAACTCCTCGGTCCAGTGGTACCGGCGAAGCGGCTCCGGCAAGATGGCCTCGAGTTTGCCCGGCGGAGGATTTGAATCCGCCGCTTTGAGAACGCCTCTTGAAGTTCCAGAAAAAAGTGCAGAGGTGCTTCCGAAAGTGCATAATGAAGTTCCTACAAGCTTAGAACAGTCGAAAGCTAAGCCGACTAAGGCCGTGCTGCGAAAGTCGCCGCTAAAGTGTGTAAGTGAGTACGCAAGTTCAATTGCAACTTCCGAATGTAACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

96

Amino Acids

10.28

Weight (kDa)

8.88

Isoelectric Point (pI)

72.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021338)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112331
rosa_samantha	Rh2AG331700 Rh2BG246500 Rh2BG340000 Rh2CG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	42
AccB1I	GGYRCC	1 cut(s)	42
AciI	CCGC	5 cut(s)	54, 87, 102, 105, 233
AfaI	GTAC	2 cut(s)	44, 254
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	98, 125, 264
AluBI	AGCT	2 cut(s)	183, 200
AluI	AGCT	2 cut(s)	183, 200
Ama87I	CYCGRG	2 cut(s)	20, 73
AoxI	GGCC	2 cut(s)	69, 213
ApeKI	GCWGC	1 cut(s)	220
Asp718I	GGTACC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	84
AvaI	CYCGRG	2 cut(s)	20, 73
AvaII	GGWCC	1 cut(s)	34
BanI	GGYRCC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	84
BisI	GCNGC	4 cut(s)	55, 105, 221, 233
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	4 cut(s)	56, 106, 222, 234
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	34
BmeT110I	CYCGRG	2 cut(s)	20, 73
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	44, 58
BmrFI	CCNGG	1 cut(s)	84
BplI	GAGNNNNNCTC	4 cut(s)	14, 46, 103, 135
BpmI	CTGGAG	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	37
Bse8I	GATNNNNATC	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	30
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	71, 215
BshNI	GGYRCC	1 cut(s)	42
BsiHKCI	CYCGRG	2 cut(s)	20, 73
BsiSI	CCGG	3 cut(s)	46, 60, 84
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	71, 215
BsoBI	CYCGRG	2 cut(s)	20, 73
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	5 cut(s)	54, 87, 102, 105, 233
BspANI	GGCC	2 cut(s)	71, 215
BspLI	GGNNCC	2 cut(s)	44, 58
BspT107I	GGYRCC	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	45
BssECI	CCNNGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	192, 287
BstDEI	CTNAG	3 cut(s)	184, 201, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 229
BstSCI	CCNGG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	71, 215
BtsIMutI	CAGTG	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	45
Cfr13I	GGNCC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	43, 253
CviJI	RGCY	6 cut(s)	57, 71, 183, 200, 205, 215
CviKI_1	RGCY	6 cut(s)	57, 71, 183, 200, 205, 215
CviQI	GTAC	2 cut(s)	43, 253
DdeI	CTNAG	3 cut(s)	184, 201, 210
EciI	GGCGGA	2 cut(s)	91, 102
Eco47I	GGWCC	1 cut(s)	34
Eco88I	CYCGRG	2 cut(s)	20, 73
FaiI	YATR	1 cut(s)	165
FaqI	GGGAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	55, 105, 221, 233
Fsp4HI	GCNGC	4 cut(s)	55, 105, 221, 233
GluI	GCNGC	4 cut(s)	55, 105, 221, 233
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	2 cut(s)	71, 215
HapII	CCGG	3 cut(s)	46, 60, 84
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	2 cut(s)	6, 98
HpaII	CCGG	3 cut(s)	46, 60, 84
Hpy188I	TCNGA	2 cut(s)	156, 277
Hpy188III	TCNNGA	5 cut(s)	10, 20, 22, 122, 131
HpyCH4III	ACNGT	2 cut(s)	192, 287
HpyCH4V	TGCA	3 cut(s)	143, 163, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 229
HpyF3I	CTNAG	3 cut(s)	184, 201, 210
KpnI	GGTACC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	62
LpnPI	CCDG	5 cut(s)	50, 59, 73, 97, 144
Lsp1109I	GCAGC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	281
MfeI	CAATTG	1 cut(s)	264
MluCI	AATT	1 cut(s)	264
MnlI	CCTC	5 cut(s)	40, 82, 83, 129, 139
MspI	CCGG	3 cut(s)	46, 60, 84
MspR9I	CCNGG	1 cut(s)	84
MunI	CAATTG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	60, 229
NciI	CCSGG	1 cut(s)	84
NlaIV	GGNNCC	2 cut(s)	44, 58
PaeR7I	CTCGAG	2 cut(s)	20, 73
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	56, 106, 222, 234
PspN4I	GGNNCC	2 cut(s)	44, 58
PspPI	GGNCC	1 cut(s)	34
PspXI	VCTCGAGB	1 cut(s)	73
RsaI	GTAC	2 cut(s)	44, 254
RsaNI	GTAC	2 cut(s)	43, 253
SatI	GCNGC	4 cut(s)	55, 105, 221, 233
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	84
SetI	ASST	3 cut(s)	150, 185, 202
Sfr274I	CTCGAG	2 cut(s)	20, 73
SinI	GGWCC	1 cut(s)	34
SlaI	CTCGAG	2 cut(s)	20, 73
SmlI	CTYRAG	2 cut(s)	20, 73
SmoI	CTYRAG	2 cut(s)	20, 73
Sse9I	AATT	1 cut(s)	264
SsiI	CCGC	5 cut(s)	54, 87, 102, 105, 233
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	2 cut(s)	192, 287
TaqI	TCGA	3 cut(s)	21, 74, 194
TaqII	GACCGA	1 cut(s)	22
TasI	AATT	1 cut(s)	264
TauI	GCSGC	3 cut(s)	57, 107, 235
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	1 cut(s)	44
TseI	GCWGC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	34
XhoI	CTCGAG	2 cut(s)	20, 73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.