Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0021338

Physical Location & Seq

Genomic Coordinates Forward (+)

40768485 .. 40780761

Gene Structure 12277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG319000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGCCTCGAGTTTTCCCGGCGGAGGATTTGAATCCGCCGCTTTGAGAACGCCTCTTGAAGTTCCAGAAAAAAGTGCAGAGTTCTTGATTGAATTTTCTCTCGATCAGATATATCTCATGAGTAACATAGGATCTGGATTAACATGTTTCGTACATAGTGGAAACATATATAAGAGGCGAGATGCCACTTATTTTACCAATTATAGCTCCAAATTCAAGCCCCAGTTCCCCCAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

6.54

Isoelectric Point (pI)

64.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021338)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0112331
rosa_samantha	Rh2AG331700 Rh2BG246500 Rh2BG340000 Rh2CG319000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	21, 36, 39
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	92, 212
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	32, 59, 92, 217
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
AlwI	GGATC	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	7
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	92, 212
AsuC2I	CCSGG	1 cut(s)	18
AvaI	CYCGRG	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	18
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	1 cut(s)	18
BmeT110I	CYCGRG	1 cut(s)	7
BmrFI	CCNGG	1 cut(s)	18
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	172
BmuI	ACTGGG	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpuMI	CCSGG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	31
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseNI	ACTGG	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	96
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	5
BsoBI	CYCGRG	1 cut(s)	7
Bsp143I	GATC	2 cut(s)	103, 131
BspACI	CCGC	3 cut(s)	21, 36, 39
BspANI	GGCC	1 cut(s)	5
BspHI	TCATGA	1 cut(s)	117
BspPI	GGATC	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	223
BssMI	GATC	2 cut(s)	103, 131
BstKTI	GATC	2 cut(s)	106, 134
BstMBI	GATC	2 cut(s)	103, 131
BstNSI	RCATGY	1 cut(s)	147
BstSCI	CCNGG	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	5
CciI	TCATGA	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	118, 144
CviJI	RGCY	3 cut(s)	5, 207, 220
CviKI_1	RGCY	3 cut(s)	5, 207, 220
CviQI	GTAC	1 cut(s)	152
DpnI	GATC	2 cut(s)	105, 133
DpnII	GATC	2 cut(s)	103, 131
EciI	GGCGGA	2 cut(s)	25, 36
Eco88I	CYCGRG	1 cut(s)	7
FaeI	CATG	2 cut(s)	121, 147
FaiI	YATR	9 cut(s)	112, 119, 128, 145, 156, 167, 169, 171, 204
FatI	CATG	2 cut(s)	117, 143
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	2 cut(s)	121, 147
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	108, 239
Hpy188III	TCNNGA	6 cut(s)	56, 65, 85, 101, 118, 135
HpyCH4V	TGCA	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	121, 147
Kzo9I	GATC	2 cut(s)	103, 131
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	4 cut(s)	31, 78, 120, 236
LweI	GCATC	1 cut(s)	172
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	2 cut(s)	105, 133
MboI	GATC	2 cut(s)	103, 131
MflI	RGATCY	1 cut(s)	131
MluCI	AATT	3 cut(s)	92, 199, 212
MnlI	CCTC	4 cut(s)	16, 17, 63, 168
MseI	TTAA	1 cut(s)	140
MspI	CCGG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	18
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	103, 131
NlaIII	CATG	2 cut(s)	121, 147
NspI	RCATGY	1 cut(s)	147
PaeR7I	CTCGAG	1 cut(s)	7
PagI	TCATGA	1 cut(s)	117
PciI	ACATGT	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	143
PspXI	VCTCGAGB	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	131
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	103, 131
ScrFI	CCNGG	1 cut(s)	18
SetI	ASST	1 cut(s)	209
SfaNI	GCATC	1 cut(s)	172
Sfr274I	CTCGAG	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	92, 199, 212
SsiI	CCGC	3 cut(s)	21, 36, 39
StyD4I	CCNGG	1 cut(s)	16
TaqI	TCGA	2 cut(s)	8, 102
TasI	AATT	3 cut(s)	92, 199, 212
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
XapI	RAATTY	2 cut(s)	92, 212
XceI	RCATGY	1 cut(s)	147
XhoI	CTCGAG	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.