Rh2BG031700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
2157383 .. 2168663
11281 bp
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UTR
Exon/CDS
Intron
Rh2BG031700.1

Sequence Viewer

Length: 171 bp
ATGATTGGAAAGATTGAGGAATTGAAGGATCAACTTGCTGTTTGTGAAAAAGAAAAATCTGGGATCGCTGAGAAGTTGCAATCCTGCAAGAAGAAGTGGGAAATTGAAAGAAATGCATTGGCTCGGTCAACAGACGATGGCGTCAGTTATGGAACTAGGATTTATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.38

Weight (kDa)

7.74

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021661)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003270.1_g000031
rosa_samantha Rh2BG031700 Rh2BG574900 Rh5BG376300 Rh5BG450700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
AasI GACNNNNNNGTC 1 cut(s) 140
AclWI GGATC 2 cut(s) 36, 71
AcyI GRCGYC 1 cut(s) 141
AgsI TTSAA 2 cut(s) 25, 107
AlwI GGATC 2 cut(s) 36, 71
BccI CCATC 1 cut(s) 131
BfaI CTAG 2 cut(s) 156, 169
BsaHI GRCGYC 1 cut(s) 141
BseMII CTCAG 1 cut(s) 60
Bsp143I GATC 2 cut(s) 28, 63
BspCNI CTCAG 1 cut(s) 61
BspPI GGATC 2 cut(s) 36, 71
BssMI GATC 2 cut(s) 28, 63
BssNI GRCGYC 1 cut(s) 141
BstACI GRCGYC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 69
BstKTI GATC 2 cut(s) 31, 66
BstMBI GATC 2 cut(s) 28, 63
CseI GACGC 1 cut(s) 130
CviJI RGCY 1 cut(s) 122
CviKI_1 RGCY 1 cut(s) 122
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 30, 65
DpnII GATC 2 cut(s) 28, 63
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EcoT22I ATGCAT 1 cut(s) 118
FaiI YATR 2 cut(s) 150, 165
FspBI CTAG 2 cut(s) 156, 169
HgaI GACGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 141
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 129
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 79, 87, 116
HpyF3I CTNAG 1 cut(s) 69
Hsp92I GRCGYC 1 cut(s) 141
Kzo9I GATC 2 cut(s) 28, 63
LpnPI CCDG 2 cut(s) 45, 97
MaeI CTAG 2 cut(s) 156, 169
MalI GATC 2 cut(s) 30, 65
MboI GATC 2 cut(s) 28, 63
MboII GAAGA 1 cut(s) 103
MluCI AATT 2 cut(s) 20, 102
MnlI CCTC 1 cut(s) 10
Mph1103I ATGCAT 1 cut(s) 118
NdeII GATC 2 cut(s) 28, 63
NsiI ATGCAT 1 cut(s) 118
PsiI TTATAA 1 cut(s) 165
Sau3AI GATC 2 cut(s) 28, 63
SgeI CNNG 5 cut(s) 47, 72, 96, 100, 135
Sse9I AATT 2 cut(s) 20, 102
SspMI CTAG 2 cut(s) 156, 169
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 20, 102
XspI CTAG 2 cut(s) 156, 169
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.