Rh5BG376300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Reverse (-)
59551595 .. 59561804
10210 bp
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UTR
Exon/CDS
Intron
Rh5BG376300.1

Sequence Viewer

Length: 174 bp
ATGATTGGAAAGACTGAGGAATTGAAGGATCAACTTGCTTCTTGTGAAAAAGAAAAAACTGGGATAGCAGAGAAGTTGCAATCCTGCAAGAAGAAGTGGGAATTTGAAAGAAATGCCTTGTCATTACTGACAAATGACACTAGCATAAAACTCGAGCTCAAATTCACTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.56

Weight (kDa)

6.26

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021661)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003270.1_g000031
rosa_samantha Rh2BG031700 Rh2BG574900 Rh5BG376300 Rh5BG450700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 101, 161
AgsI TTSAA 2 cut(s) 25, 107
AluBI AGCT 1 cut(s) 157
AluI AGCT 1 cut(s) 157
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 1 cut(s) 36
Ama87I CYCGRG 1 cut(s) 152
ApoI RAATTY 2 cut(s) 101, 161
AvaI CYCGRG 1 cut(s) 152
BanII GRGCYC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 159
BcgI CGANNNNNNTGC 2 cut(s) 133, 167
BfaI CTAG 1 cut(s) 141
BmeT110I CYCGRG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 152
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 1 cut(s) 28
BspCNI CTCAG 1 cut(s) 7
BspPI GGATC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 64
BssMI GATC 1 cut(s) 28
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 165
CviJI RGCY 1 cut(s) 157
CviKI_1 RGCY 1 cut(s) 157
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 159
FaiI YATR 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 159
FspBI CTAG 1 cut(s) 141
FspEI CC 8 cut(s) 2, 11, 45, 46, 82, 83, 97, 130
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 79, 87
HpyF3I CTNAG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 45, 97
MaeI CTAG 1 cut(s) 141
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 3 cut(s) 20, 101, 161
MnlI CCTC 1 cut(s) 10
NdeII GATC 1 cut(s) 28
PaeR7I CTCGAG 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 152
SacI GAGCTC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 28
SduI GDGCHC 1 cut(s) 159
SetI ASST 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 152
SgeI CNNG 9 cut(s) 47, 54, 72, 96, 100, 130, 153, 164, 166
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 20, 101, 161
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 1 cut(s) 159
TaqI TCGA 1 cut(s) 153
TasI AATT 3 cut(s) 20, 101, 161
TscAI CASTG 1 cut(s) 172
TspRI CASTG 1 cut(s) 172
XapI RAATTY 2 cut(s) 101, 161
XhoI CTCGAG 1 cut(s) 152
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.