Rh2BG574900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
79067466 .. 79077045
9580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG574900.1

Sequence Viewer

Length: 264 bp
ATGATAGGAAAGACTGAGGAATTGAAGGATCAACTTGCTTCTTGTGAAAAAGAAAAAACTGGGATAGCAGAGAAGTTGCAATCCTGCAAGAAGAGGTGGGAATTTGAAAGAAGTGCCTTGGTAAGTCAAGTGGAGACTCTGAAAGAGAACTTGAATGCACAAATCAGGCTACTCTTCATAATTAGAATTTACATTGAGGGCCCAAGGGACGAGGTCCACAAAGAAGAATATAGTTTCCCTCTTTCCTCTTCCACAAGGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

10.17

Weight (kDa)

5.92

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021661)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003270.1_g000031
rosa_samantha Rh2BG031700 Rh2BG574900 Rh5BG376300 Rh5BG450700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 36
AcsI RAATTY 2 cut(s) 101, 186
AgsI TTSAA 3 cut(s) 25, 107, 154
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 36
AoxI GGCC 1 cut(s) 199
ApaI GGGCCC 1 cut(s) 203
ApoI RAATTY 2 cut(s) 101, 186
AspS9I GGNCC 3 cut(s) 199, 200, 214
AvaII GGWCC 1 cut(s) 214
BaeGI GKGCMC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 3 cut(s) 199, 200, 214
BmiI GGNNCC 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 69
BmuI ACTGGG 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 117, 203
Bse1I ACTGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 117, 203
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 203
BshFI GGCC 1 cut(s) 201
BslFI GGGAC 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 221
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 1 cut(s) 201
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 28
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 1 cut(s) 201
BspPI GGATC 1 cut(s) 36
BsrI ACTGG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 117, 203
BssMI GATC 1 cut(s) 28
BssT1I CCWWGG 2 cut(s) 117, 203
Bst6I CTCTTC 3 cut(s) 86, 179, 253
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 1 cut(s) 31
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 28
BstSLI GKGCMC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 199, 200, 214
CviJI RGCY 2 cut(s) 169, 201
CviKI_1 RGCY 2 cut(s) 169, 201
DdeI CTNAG 1 cut(s) 15
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 3 cut(s) 86, 179, 253
EarI CTCTTC 3 cut(s) 86, 179, 253
Eco130I CCWWGG 2 cut(s) 117, 203
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 199
EcoT14I CCWWGG 2 cut(s) 117, 203
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 2 cut(s) 117, 203
FaiI YATR 2 cut(s) 179, 231
FaqI GGGAC 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 203
HaeIII GGCC 1 cut(s) 201
HinfI GANTC 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 141
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 79, 87, 158
HpyF3I CTNAG 1 cut(s) 15
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 3 cut(s) 45, 97, 151
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 4 cut(s) 103, 166, 236, 240
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 4 cut(s) 20, 101, 180, 186
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 6 cut(s) 10, 87, 190, 205, 249, 256
Mva1269I GAATGC 1 cut(s) 160
NdeII GATC 1 cut(s) 28
NlaIV GGNNCC 1 cut(s) 201
PctI GAATGC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 212
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 201
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 3 cut(s) 199, 200, 214
PsyI GACNNNGTC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 28
Sau96I GGNCC 3 cut(s) 199, 200, 214
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 203
SetI ASST 2 cut(s) 98, 216
SinI GGWCC 1 cut(s) 214
Sse9I AATT 4 cut(s) 20, 101, 180, 186
StyI CCWWGG 2 cut(s) 117, 203
TasI AATT 4 cut(s) 20, 101, 180, 186
TspDTI ATGAA 1 cut(s) 166
Tth111I GACNNNGTC 1 cut(s) 212
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 2 cut(s) 101, 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.