Rh2BG035600

FtsJ-like methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0019513
Physical Location & Seq
Reverse (-)
2460230 .. 2480724
20495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG035600.1

Sequence Viewer

Length: 579 bp
ATGAATTTACCAAAACTAAAATCGTGTCCGTTTTATGTTGATCGAAAAGATGAGAGCCCTGATAGTTACTTTTCTGGTAACAGTAGTGATTTCAATACTGGTAGTAGTCCTAGTGCTGGCACTAGCAACTCTGTTGATTCTCAATCGCTTGGTGATTATGCAAGATGGGTCGGAGTGCCAATTCATAGTCCCTGTAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAGCACCAAAGAAGAAGAAGAGGCTGGATGAAGTGTGCCTTGAAAGTCCAATACCCAATACCCATGCTGAGAGCTTCTGTCTGATTGCTGCTGGAAATGAAGAGGAACTTGACCATGTTCATCACATGGAACTGATGCATGATCGCGTTTTAAAATATCCAGATCGTGTTCAGAATTTGGATGACTGTTCTTGTTATGGACCATCCTCTGGAAAGGTGGAGCACCCGGTCACTGAGTGGATAGCAGAAATAAATCTTCCAGCAGCCCAAGTTGCAGTTGTGCATATATATATATATTGTATTGACAATTTAGACGTGCTGAATTTTCTTTCTCTCGATTTAGATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FtsJ S4

Protein Analysis

192

Amino Acids

21.33

Weight (kDa)

5.04

Isoelectric Point (pI)

53.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019513)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004135.1_g000003
rosa_rugosa Rorug03G0316400
rosa_samantha Rh2BG035600 Rh5BG425300 Rh5CG449400 Rh6AG240200 Rh6BG084600 Rh7AG481100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 1 cut(s) 375
AclWI GGATC 1 cut(s) 234
AcsI RAATTY 3 cut(s) 4, 403, 550
AdeI CACNNNGTG 1 cut(s) 465
AfiI CCNNNNNNNGG 2 cut(s) 116, 437
AgsI TTSAA 2 cut(s) 94, 272
AjiI CACGTC 1 cut(s) 544
AluBI AGCT 2 cut(s) 201, 303
AluI AGCT 2 cut(s) 201, 303
Alw21I GWGCWC 1 cut(s) 453
AlwI GGATC 1 cut(s) 234
ApeKI GCWGC 3 cut(s) 206, 317, 491
ApoI RAATTY 3 cut(s) 4, 403, 550
AspS9I GGNCC 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 455
AsuHPI GGTGA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 3 cut(s) 193, 304, 503
BccI CCATC 2 cut(s) 159, 439
BcnI CCSGG 1 cut(s) 455
BfaI CTAG 2 cut(s) 111, 123
BfmI CTRYAG 1 cut(s) 193
BisI GCNGC 3 cut(s) 207, 318, 492
BlsI GCNGC 3 cut(s) 208, 319, 493
Bme1390I CCNGG 1 cut(s) 455
Bme18I GGWCC 1 cut(s) 428
BmgBI CACGTC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 437
Bse1I ACTGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 262, 415, 431
BseLI CCNNNNNNNGG 2 cut(s) 116, 437
BseMII CTCAG 2 cut(s) 288, 453
BseNI ACTGG 1 cut(s) 103
BseXI GCAGC 3 cut(s) 193, 304, 503
Bsh1236I CGCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 116, 437
BsmFI GGGAC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 59, 453
Bsp143I GATC 4 cut(s) 40, 226, 370, 391
BspCNI CTCAG 2 cut(s) 289, 454
BspFNI CGCG 1 cut(s) 375
BspPI GGATC 1 cut(s) 234
BsrI ACTGG 1 cut(s) 103
BssMI GATC 4 cut(s) 40, 226, 370, 391
Bst4CI ACNGT 2 cut(s) 83, 416
Bst6I CTCTTC 2 cut(s) 242, 324
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 297, 462
BstF5I GGATG 3 cut(s) 262, 415, 431
BstFNI CGCG 1 cut(s) 375
BstKTI GATC 4 cut(s) 43, 229, 373, 394
BstMBI GATC 4 cut(s) 40, 226, 370, 391
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 193
BstUI CGCG 1 cut(s) 375
BstV1I GCAGC 3 cut(s) 193, 304, 503
BtrI CACGTC 1 cut(s) 544
BtsCI GGATG 3 cut(s) 262, 415, 431
BtsIMutI CAGTG 1 cut(s) 459
Cac8I GCNNGC 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 428
CviAII CATG 4 cut(s) 293, 344, 355, 368
CviJI RGCY 5 cut(s) 57, 201, 253, 303, 494
CviKI_1 RGCY 5 cut(s) 57, 201, 253, 303, 494
DdeI CTNAG 2 cut(s) 297, 462
DpnI GATC 4 cut(s) 42, 228, 372, 393
DpnII GATC 4 cut(s) 40, 226, 370, 391
DraI TTTAAA 1 cut(s) 381
DraIII CACNNNGTG 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 242, 324
EarI CTCTTC 2 cut(s) 242, 324
Eco24I GRGCYC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 428
EcoRV GATATC 1 cut(s) 574
EcoT22I ATGCAT 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 4 cut(s) 296, 347, 358, 371
FalI AAGNNNNNCTT 4 cut(s) 252, 284, 321, 353
FaqI GGGAC 1 cut(s) 174
FatI CATG 4 cut(s) 292, 343, 354, 367
Fnu4HI GCNGC 3 cut(s) 207, 318, 492
FokI GGATG 3 cut(s) 269, 418, 422
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 207, 318, 492
FspBI CTAG 2 cut(s) 111, 123
GluI GCNGC 3 cut(s) 207, 318, 492
HapII CCGG 1 cut(s) 455
Hin1II CATG 4 cut(s) 296, 347, 358, 371
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 164
Hpy188I TCNGA 3 cut(s) 173, 312, 402
Hpy188III TCNNGA 3 cut(s) 389, 438, 563
HpyCH4III ACNGT 2 cut(s) 83, 416
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 4 cut(s) 161, 367, 503, 511
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 297, 462
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 4 cut(s) 296, 347, 358, 371
Kzo9I GATC 4 cut(s) 40, 226, 370, 391
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 3 cut(s) 193, 304, 503
LweI GCATC 1 cut(s) 354
MaeI CTAG 2 cut(s) 111, 123
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 65, 77, 457
MalI GATC 4 cut(s) 42, 228, 372, 393
MboI GATC 4 cut(s) 40, 226, 370, 391
MboII GAAGA 5 cut(s) 253, 256, 259, 341, 476
MhlI GDGCHC 2 cut(s) 59, 453
MluCI AATT 5 cut(s) 4, 180, 403, 535, 550
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 3 cut(s) 243, 325, 445
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 1 cut(s) 380
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 455
MvnI CGCG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 1 cut(s) 455
NdeII GATC 4 cut(s) 40, 226, 370, 391
NlaIII CATG 4 cut(s) 296, 347, 358, 371
NmuCI GTSAC 1 cut(s) 457
NsiI ATGCAT 1 cut(s) 369
PfeI GAWTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 3 cut(s) 208, 319, 493
PspPI GGNCC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 3 cut(s) 207, 318, 492
Sau3AI GATC 4 cut(s) 40, 226, 370, 391
Sau96I GGNCC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 455
SduI GDGCHC 2 cut(s) 59, 453
SetI ASST 4 cut(s) 203, 305, 447, 546
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 193
SinI GGWCC 1 cut(s) 428
Sse9I AATT 5 cut(s) 4, 180, 403, 535, 550
SspMI CTAG 2 cut(s) 111, 123
StyD4I CCNGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 83, 416
TaiI ACGT 1 cut(s) 546
TaqI TCGA 2 cut(s) 43, 564
TasI AATT 5 cut(s) 4, 180, 403, 535, 550
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TscAI CASTG 1 cut(s) 466
TseFI GTSAC 1 cut(s) 457
TseI GCWGC 3 cut(s) 206, 317, 491
Tsp45I GTSAC 1 cut(s) 457
TspDTI ATGAA 5 cut(s) 17, 173, 273, 338, 342
TspGWI ACGGA 1 cut(s) 18
TspRI CASTG 1 cut(s) 466
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 1 cut(s) 428
XapI RAATTY 3 cut(s) 4, 403, 550
XspI CTAG 2 cut(s) 111, 123
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.