Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0019513

Physical Location & Seq

Genomic Coordinates Reverse (-)

62572718 .. 62574415

Gene Structure 1698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG449400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGAAGTAAATTGGCTGATGGACCTGGAAAGTATTGCTTTCTTTGCTGTCCAAGAACACAACAAGCGACAGCAAGATGGGTCGGAGTGCCAATTCATAGTCCCTATAGAAGCTTTGCTGCTGTGAAGTTATCAAAGGATCAAGCACCAAAGAAGAAGAAGAGGCTGGATGAAGTGTGCCTTGAAAGATATGTTGCAACTATAAATGTAATATTTTCTGCACAGCGTTCAATGGTTCCTGTAGACTCTTGCTATATAGGCTCTCATAACTCTGCCTTCCTACAGCAGGCTTCATACATTACTGGTGGTGTATATCTGAAGCCCCAACAACCAGATGGACTGCTTCAATATCTTACAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006412 GO:0006464 GO:0006468 GO:0006518 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016310 GO:0016591 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

Tfb4

Protein Analysis

121

Amino Acids

13.5

Weight (kDa)

9.54

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tfb4	PF03850	61 - 120	4.6e-22	Transcription factor Tfb4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019513)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004135.1_g000003
rosa_rugosa	Rorug03G0316400
rosa_samantha	Rh2BG035600 Rh5BG425300 Rh5CG449400 Rh6AG240200 Rh6BG084600 Rh7AG481100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	243
AclWI	GGATC	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	3 cut(s)	185, 231, 347
AjnI	CCWGG	1 cut(s)	25
AluBI	AGCT	1 cut(s)	114
AluI	AGCT	1 cut(s)	114
AlwI	GGATC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	3 cut(s)	14, 72, 329
BciT130I	CCWGG	1 cut(s)	27
BfmI	CTRYAG	3 cut(s)	106, 240, 281
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	27
Bme18I	GGWCC	1 cut(s)	23
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	307
BseBI	CCWGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseNI	ACTGG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	87
Bsp143I	GATC	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	142
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 258
BstNI	CCWGG	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	25
BstSFI	CTRYAG	3 cut(s)	106, 240, 281
BstV1I	GCAGC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	23
CviJI	RGCY	6 cut(s)	17, 114, 166, 261, 290, 322
CviKI_1	RGCY	6 cut(s)	17, 114, 166, 261, 290, 322
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	25
FaiI	YATR	9 cut(s)	99, 108, 192, 203, 255, 257, 267, 295, 313
FalI	AAGNNNNNCTT	4 cut(s)	23, 55, 165, 197
FaqI	GGGAC	1 cut(s)	87
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	1 cut(s)	245
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	86, 318
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	2 cut(s)	197, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 258
Kzo9I	GATC	1 cut(s)	139
LpnPI	CCDG	7 cut(s)	12, 39, 152, 252, 272, 288, 345
Lsp1109I	GCAGC	1 cut(s)	106
MalI	GATC	1 cut(s)	141
MboI	GATC	1 cut(s)	139
MboII	GAAGA	3 cut(s)	166, 169, 172
MluCI	AATT	2 cut(s)	11, 93
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	45, 258
NdeII	GATC	1 cut(s)	139
NlaIV	GGNNCC	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	25
PspGI	CCWGG	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	364
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	27
SetI	ASST	2 cut(s)	28, 116
SfcI	CTRYAG	3 cut(s)	106, 240, 281
SinI	GGWCC	1 cut(s)	23
Sse9I	AATT	2 cut(s)	11, 93
SspI	AATATT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	25
TaaI	ACNGT	1 cut(s)	358
TasI	AATT	2 cut(s)	11, 93
Tru1I	TTAA	1 cut(s)	364
Tru9I	TTAA	1 cut(s)	364
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	86, 186, 282
VpaK11BI	GGWCC	1 cut(s)	23
XagI	CCTNNNNNAGG	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.