Rh2BG058200

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020025
Physical Location & Seq
Reverse (-)
4310053 .. 4310745
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG058200.1

Sequence Viewer

Length: 693 bp
ATGGCTGGTGCCTCCATTAACGTTGCATTAAACGCATTTCAGGCTGTCCTACCTGACGTATTGGGTTCAGGCGAAGTGTTAACAAATGCCCGAGATTGGTTGGAGAGGATGAAAGCTATTCTAGAGGATTCAGAAGATGAGGTTGAAGAAGGTAACAAGCAATTTATATCTTATGTGAAAGAGGTCGAGAATATAGCTGTTTCTATTGGGAATGTTCTTGACAGCTTTTTGGCTCGCGTGACTCGTCATCGATATCAACCAAACAGATTCGTGCAGAGGAAGATAGCAACCGTCTTACTGGGTAGTAAAATTAGATCTATTCAGACTAATAGAATTGATCATCTTCCAGCATTCCCGCCAACAAGTTCCAGCTCTAGCCGTTGGAGCTACAAAGATGTGCAAAATCTTATAGAATGTGATGGATTAGTGGGGTTTGAGAAGGTCGAAGAACAGCTTTTTAATGAGTTGCAGAAAGCAAGTCTAGAACGCTCATTTGTGTTGGTTGCAGGTCCCGCTGGTTCTGGGAAAACCGCTCTGGTATATAAATTGTACCAAAACGACGAGAGGGTTAGAGCCTTTAGTGTCCGTGAATGGCTTCAAGCCTCAGAGACGCTGGAATCAAGCCTTCAAGGAGAGAAGTTTCTAGTTGTTTTAGATGATGTTTGGAGCAAAGATTGTCGAATATATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

230

Amino Acids

25.92

Weight (kDa)

5.27

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 26 - 90 1.6e-06 Rx N-terminal domain
NB-ARC PF00931 146 - 206 4.6e-06 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020025)

Species Orthologous Gene IDs
rosa_laevigata RLG00000016183
rosa_roxburghii Rroxscaffold_2G00150510
rosa_rugosa Rorug02G0013300 Rorug02G0013400
rosa_samantha Rh2AG059500 Rh2BG058200 Rh2CG060000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 691
Acc36I ACCTGC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 8
AccBSI CCGCTC 1 cut(s) 533
AccII CGCG 1 cut(s) 237
AciI CCGC 3 cut(s) 356, 513, 531
AclI AACGTT 1 cut(s) 21
AfaI GTAC 1 cut(s) 551
AfiI CCNNNNNNNGG 1 cut(s) 96
AgsI TTSAA 3 cut(s) 146, 599, 629
AluBI AGCT 6 cut(s) 116, 197, 225, 372, 387, 454
AluI AGCT 6 cut(s) 116, 197, 225, 372, 387, 454
Alw26I GTCTC 1 cut(s) 602
Ama87I CYCGRG 1 cut(s) 90
Asp700I GAANNNNTTC 1 cut(s) 594
AspS9I GGNCC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 509
BanI GGYRCC 1 cut(s) 8
BccI CCATC 1 cut(s) 413
BceAI ACGGC 1 cut(s) 363
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 602
BfaI CTAG 4 cut(s) 122, 375, 482, 644
BfuAI ACCTGC 1 cut(s) 497
BglII AGATCT 1 cut(s) 314
Bme18I GGWCC 1 cut(s) 509
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 2 cut(s) 10, 511
BmrI ACTGGG 1 cut(s) 308
BmuI ACTGGG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 250
BseGI GGATG 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 618
BseNI ACTGG 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 90
BslFI GGGAC 1 cut(s) 495
BslI CCNNNNNNNGG 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 602
BsmBI CGTCTC 1 cut(s) 602
BsmFI GGGAC 1 cut(s) 495
BsmI GAATGC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 90
Bsp143I GATC 2 cut(s) 314, 337
BspACI CCGC 3 cut(s) 356, 513, 531
BspCNI CTCAG 1 cut(s) 617
BspDI ATCGAT 1 cut(s) 250
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 10, 511
BspMI ACCTGC 1 cut(s) 497
BspT107I GGYRCC 1 cut(s) 8
BsrBI CCGCTC 1 cut(s) 533
BsrI ACTGG 1 cut(s) 303
BssMI GATC 2 cut(s) 314, 337
Bst4CI ACNGT 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 604
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 2 cut(s) 317, 340
BstMAI GTCTC 1 cut(s) 602
BstMBI GATC 2 cut(s) 314, 337
BstMWI GCNNNNNNNGC 4 cut(s) 32, 41, 384, 512
BstUI CGCG 1 cut(s) 237
BstX2I RGATCY 1 cut(s) 314
BstYI RGATCY 1 cut(s) 314
Bsu15I ATCGAT 1 cut(s) 250
BsuTUI ATCGAT 1 cut(s) 250
BtsCI GGATG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 497
Cac8I GCNNGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 509
ClaI ATCGAT 1 cut(s) 250
CseI GACGC 1 cut(s) 619
Csp6I GTAC 1 cut(s) 550
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 1 cut(s) 604
DpnI GATC 2 cut(s) 316, 339
DpnII GATC 2 cut(s) 314, 337
Eco32I GATATC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 509
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 509
EcoRV GATATC 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 602
FaiI YATR 8 cut(s) 167, 174, 194, 410, 541, 543, 685, 691
FalI AAGNNNNNCTT 2 cut(s) 438, 470
FaqI GGGAC 1 cut(s) 495
FauI CCCGC 2 cut(s) 363, 520
FbaI TGATCA 1 cut(s) 337
FokI GGATG 1 cut(s) 121
FspBI CTAG 4 cut(s) 122, 375, 482, 644
HgaI GACGC 1 cut(s) 619
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 4 cut(s) 128, 241, 267, 617
HpaI GTTAAC 1 cut(s) 81
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 3 cut(s) 133, 324, 607
Hpy188III TCNNGA 4 cut(s) 122, 187, 218, 482
Hpy8I GTNNAC 1 cut(s) 81
Hpy99I CGWCG 1 cut(s) 563
HpyAV CCTTC 3 cut(s) 143, 433, 635
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 21, 57
HpyCH4V TGCA 5 cut(s) 26, 274, 400, 469, 506
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 41, 384, 512
HpyF3I CTNAG 1 cut(s) 604
HpySE526I ACGT 2 cut(s) 21, 57
Ksp22I TGATCA 1 cut(s) 337
KspAI GTTAAC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 314, 337
LmnI GCTCC 2 cut(s) 384, 666
MaeI CTAG 4 cut(s) 122, 375, 482, 644
MaeII ACGT 2 cut(s) 21, 57
MaeIII GTNAC 2 cut(s) 152, 238
MalI GATC 2 cut(s) 316, 339
MbiI CCGCTC 1 cut(s) 533
MboI GATC 2 cut(s) 314, 337
MboII GAAGA 5 cut(s) 146, 158, 292, 335, 458
MflI RGATCY 1 cut(s) 314
MluCI AATT 4 cut(s) 161, 309, 333, 545
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 2 cut(s) 81, 362
MnlI CCTC 8 cut(s) 22, 99, 118, 133, 175, 270, 558, 613
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 4 cut(s) 18, 29, 80, 459
MspA1I CMGCKG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 350
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 4 cut(s) 32, 41, 384, 512
NdeII GATC 2 cut(s) 314, 337
NlaIV GGNNCC 2 cut(s) 10, 511
NmuCI GTSAC 1 cut(s) 238
PcsI WCGNNNNNNNCGW 1 cut(s) 241
PctI GAATGC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 3 cut(s) 128, 267, 617
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
PpuMI RGGWCCY 1 cut(s) 509
PsiI TTATAA 1 cut(s) 691
Psp1406I AACGTT 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 509
PspN4I GGNNCC 2 cut(s) 10, 511
PspPI GGNCC 1 cut(s) 509
PspPPI RGGWCCY 1 cut(s) 509
PsuI RGATCY 1 cut(s) 314
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
SaqAI TTAA 4 cut(s) 18, 29, 80, 459
Sau3AI GATC 2 cut(s) 314, 337
Sau96I GGNCC 1 cut(s) 509
SchI GAGTC 1 cut(s) 235
SinI GGWCC 1 cut(s) 509
Sse9I AATT 4 cut(s) 161, 309, 333, 545
SsiI CCGC 3 cut(s) 356, 513, 531
SspMI CTAG 4 cut(s) 122, 375, 482, 644
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 24, 60
TaqI TCGA 4 cut(s) 186, 250, 444, 679
TasI AATT 4 cut(s) 161, 309, 333, 545
TfiI GAWTC 3 cut(s) 128, 267, 617
Tru1I TTAA 4 cut(s) 18, 29, 80, 459
Tru9I TTAA 4 cut(s) 18, 29, 80, 459
TseFI GTSAC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 575
VpaK11BI GGWCC 1 cut(s) 509
XbaI TCTAGA 2 cut(s) 121, 481
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 4 cut(s) 122, 375, 482, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.