Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015233

Physical Location & Seq

Genomic Coordinates Reverse (-)

21593094 .. 21594719

Gene Structure 1626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG218800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGCTGATGAGGATAGAAACCTAGTGGAAATTTTGGAGGAGCATACCGAGATTGACATTGCGAAATATATCAATTATGTAAGTGCCCCAGAGGCAGGTGCTATTGCAACGTTTTCTGGTACCACGCGCGACACCTTTGATGGAAAAGCAGTCTTGGAGTTGAGATATGAAGCATATGTTCCCATGGCAATACGATGCATGAAATCCATTTGTTCATCTGCTAGATCCTCCTGGAATCTTGTCTCCATTGCAGTTGCCCACCGCCTTGGCCCAGTTCCTGTTGGTAAAACGAGTGTTTTCATTGCAGTCTCATCTGTTCATCGAGTTGATTCATTAGATGCTTGTAAGTTTATAATTGATGAGATAAAGGCGTCAGTTCCAATATGGAAGAAGGAGGTATATACTAATGGAGAGGTTTGGAAGGAGAACTCAGAGTTCTTGGAGAGGAGGTTGGATCTCGGCAAAAAAGAAGGCATATGTAATGAGAGAGACTTTGAAGCACAAAGACATATTAGGAAGAGCTGCTGTGGTGCTAAGGTAAAGGTTGTAGAAGAAGGAGATTCTGTAATTAGCAAACATGAAGCTCACCAAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0016740 GO:0016782 GO:0016783 GO:0018130 GO:0019538 GO:0019637 GO:0019693 GO:0030366 GO:0032324 GO:0034641 GO:0042278 GO:0043170 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0051186 GO:0051188 GO:0051189 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

MoaE

Protein Analysis

199

Amino Acids

22.27

Weight (kDa)

5.74

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoaE	PF02391	15 - 124	1.2e-37	MoaE protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43760 AT2G43760 AT2G43760
fragaria_vesca	FvH4_1g18980
prunus_persica	Prupe.4G269700_v2.0.a1 Prupe.4G269700_v2.0.a1 Prupe.4G269700_v2.0.a1
pyrus_communis	pycom5153684g00150
rosa_chinensis	RchiOBHm_Chr2g0110001
rosa_roxburghii	Rroxscaffold_2G00133790
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216600 Rh2BG226600 Rh2CG218800 Rh2DG222200
rosa_wichuraiana	Rw2G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	353
AarI	CACCTGC	1 cut(s)	86
Acc36I	ACCTGC	1 cut(s)	86
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	2 cut(s)	127, 129
AciI	CCGC	1 cut(s)	262
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	2 cut(s)	219, 462
AcsI	RAATTY	1 cut(s)	30
AcyI	GRCGYC	1 cut(s)	371
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	497
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	2 cut(s)	522, 584
AluI	AGCT	2 cut(s)	522, 584
Alw26I	GTCTC	3 cut(s)	247, 313, 483
AlwI	GGATC	2 cut(s)	219, 462
AlwNI	CAGNNNCTG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	522
ApoI	RAATTY	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	247, 313, 483
BfaI	CTAG	2 cut(s)	23, 222
BfuAI	ACCTGC	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	92
BisI	GCNGC	1 cut(s)	523
BlsI	GCNGC	1 cut(s)	524
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	266
BmsI	GCATC	2 cut(s)	185, 328
BmuI	ACTGGG	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	534
BsaHI	GRCGYC	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	183, 265
BsaXI	ACNNNNNCTCC	4 cut(s)	434, 464, 549, 579
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	3 cut(s)	57, 246, 300
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	183, 265
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMI	GCAATG	3 cut(s)	57, 246, 300
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	2 cut(s)	53, 460
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	509
Bsh1236I	CGCG	2 cut(s)	127, 129
BshFI	GGCC	1 cut(s)	270
BshNI	GGYRCC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	247, 313, 483
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	224, 454
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	443
BspFNI	CGCG	2 cut(s)	127, 129
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	219, 462
BspQI	GCTCTTC	1 cut(s)	512
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	3 cut(s)	57, 246, 300
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	183, 265
BssMI	GATC	2 cut(s)	224, 454
BssNI	GRCGYC	1 cut(s)	371
BssT1I	CCWWGG	2 cut(s)	183, 265
Bst2UI	CCWGG	1 cut(s)	232
Bst6I	CTCTTC	1 cut(s)	512
BstACI	GRCGYC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	430, 534
BstDSI	CCRYGG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	127, 129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	227, 457
BstMAI	GTCTC	3 cut(s)	247, 313, 483
BstMBI	GATC	2 cut(s)	224, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	2 cut(s)	127, 129
BstV1I	GCAGC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	224, 454
BstXI	CCANNNNNNTGG	1 cut(s)	266
BstYI	RGATCY	2 cut(s)	224, 454
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	86
CaiI	CAGNNNCTG	1 cut(s)	278
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	3 cut(s)	184, 199, 578
CviJI	RGCY	4 cut(s)	5, 270, 522, 584
CviKI_1	RGCY	4 cut(s)	5, 270, 522, 584
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	430, 534
DpnI	GATC	2 cut(s)	226, 456
DpnII	GATC	2 cut(s)	224, 454
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	2 cut(s)	183, 265
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	183, 265
EcoT22I	ATGCAT	1 cut(s)	200
ErhI	CCWWGG	2 cut(s)	183, 265
FaeI	CATG	3 cut(s)	187, 202, 581
FatI	CATG	3 cut(s)	183, 198, 577
FauNDI	CATATG	2 cut(s)	175, 476
Fnu4HI	GCNGC	1 cut(s)	523
Fsp4HI	GCNGC	1 cut(s)	523
FspBI	CTAG	2 cut(s)	23, 222
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	523
HaeIII	GGCC	1 cut(s)	270
HgaI	GACGC	1 cut(s)	360
HhaI	GCGC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	187, 202, 581
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	235, 329, 560
HphI	GGTGA	1 cut(s)	578
Hpy188I	TCNGA	1 cut(s)	433
HpyAV	CCTTC	4 cut(s)	385, 415, 464, 548
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	4 cut(s)	107, 198, 251, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	430, 534
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	371
Hsp92II	CATG	3 cut(s)	187, 202, 581
HspAI	GCGC	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	224, 454
LguI	GCTCTTC	1 cut(s)	512
LmnI	GCTCC	1 cut(s)	40
LpnPI	CCDG	7 cut(s)	81, 102, 102, 217, 244, 285, 291
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	2 cut(s)	185, 328
MaeI	CTAG	2 cut(s)	23, 222
MaeII	ACGT	1 cut(s)	110
MalI	GATC	2 cut(s)	226, 456
MboI	GATC	2 cut(s)	224, 454
MboII	GAAGA	3 cut(s)	400, 529, 563
MflI	RGATCY	2 cut(s)	224, 454
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	4 cut(s)	30, 73, 354, 567
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	8 cut(s)	4, 31, 85, 238, 388, 406, 438, 441
Mph1103I	ATGCAT	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	232
MvaI	CCWGG	1 cut(s)	232
MvnI	CGCG	2 cut(s)	127, 129
MwoI	GCNNNNNNNGC	1 cut(s)	92
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	2 cut(s)	175, 476
NdeII	GATC	2 cut(s)	224, 454
NlaIII	CATG	3 cut(s)	187, 202, 581
NlaIV	GGNNCC	1 cut(s)	121
NmeAIII	GCCGAG	1 cut(s)	438
NsiI	ATGCAT	1 cut(s)	200
PaqCI	CACCTGC	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	235, 329, 560
PfoI	TCCNGGA	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	353
Psp1406I	AACGTT	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	269
PstNI	CAGNNNCTG	1 cut(s)	278
PsuI	RGATCY	2 cut(s)	224, 454
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	512
SatI	GCNGC	1 cut(s)	523
Sau3AI	GATC	2 cut(s)	224, 454
Sau96I	GGNCC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	2 cut(s)	185, 328
Sse9I	AATT	4 cut(s)	30, 73, 354, 567
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	2 cut(s)	23, 222
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	2 cut(s)	183, 265
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	322
TasI	AATT	4 cut(s)	30, 73, 354, 567
TfiI	GAWTC	3 cut(s)	235, 329, 560
TseI	GCWGC	1 cut(s)	522
TspDTI	ATGAA	7 cut(s)	183, 204, 215, 289, 308, 321, 594
XapI	RAATTY	1 cut(s)	30
XspI	CTAG	2 cut(s)	23, 222
Zsp2I	ATGCAT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.