Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0015233

Physical Location & Seq

Genomic Coordinates Reverse (-)

21396202 .. 21397835

Gene Structure 1634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGATGGCTGATGAGGATAGAAACCTAGTGGAAATTTTGGAGGAGCATACCGAGATTGACATTGCGAAATATATCAATTATGTAAGTGCCCCAGAGGCAGGTGCTATTGCAACGTTTTCTGGTACCACGCGCGACACCTTTGATGGAAAAGCAGTCTTGGAGTTGAGATATGAAGCATATGTTCCCATGGCAATACGATGCATGAAATCCATTTGTTCATCTGCTAGATCCTCCTGGAATCTTGTCTCCATTGCAGTTGCCCACCGCCTTGGCCCAGTTCCTGTTGGTAAAACGAGTGTTTTCATTGCAGTCTCATCTGTTCATCGAGTTGATTCATTAGATGCTTGTAAGTTTATAATTGATGAGATAAAGGCGTCAGTTCCAATATGGAAGAAGGAGGTATATACTAATGGAGAGGTTTGGAAGGAGAACTCAGAGTTCTTGGAGAGGAGGTTGGATCTCGGCAAAAAAGAAGGCATATGTAATAAGAGAGACTTTGAAGCACAAAGACATATTAGGAAGAGCTGCTGTGGTGCTAAGGTAAAGGTTGTAGAAGAAGGAGATTCTGTAATTAGCAAACATGAAGCTCACCAAGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0016740 GO:0016782 GO:0016783 GO:0018130 GO:0019538 GO:0019637 GO:0019693 GO:0030366 GO:0032324 GO:0034641 GO:0042278 GO:0043170 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0051186 GO:0051188 GO:0051189 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

MoaE

Protein Analysis

200

Amino Acids

22.4

Weight (kDa)

6.1

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoaE	PF02391	16 - 125	1.2e-37	MoaE protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015233)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43760 AT2G43760 AT2G43760
fragaria_vesca	FvH4_1g18980
prunus_persica	Prupe.4G269700_v2.0.a1 Prupe.4G269700_v2.0.a1 Prupe.4G269700_v2.0.a1
pyrus_communis	pycom5153684g00150
rosa_chinensis	RchiOBHm_Chr2g0110001
rosa_roxburghii	Rroxscaffold_2G00133790
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216600 Rh2BG226600 Rh2CG218800 Rh2DG222200
rosa_wichuraiana	Rw2G016740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	356
AarI	CACCTGC	1 cut(s)	89
Acc36I	ACCTGC	1 cut(s)	89
Acc65I	GGTACC	1 cut(s)	122
AccB1I	GGYRCC	1 cut(s)	122
AccII	CGCG	2 cut(s)	130, 132
AciI	CCGC	1 cut(s)	265
AclI	AACGTT	1 cut(s)	113
AclWI	GGATC	2 cut(s)	222, 465
AcsI	RAATTY	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	525, 587
AluI	AGCT	2 cut(s)	525, 587
Alw26I	GTCTC	3 cut(s)	250, 316, 486
AlwI	GGATC	2 cut(s)	222, 465
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	525
ApoI	RAATTY	1 cut(s)	33
Asp718I	GGTACC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	512
BccI	CCATC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	250, 316, 486
BfaI	CTAG	2 cut(s)	26, 225
BfuAI	ACCTGC	1 cut(s)	89
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	1 cut(s)	526
BlsI	GCNGC	1 cut(s)	527
Bme1390I	CCNGG	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	2 cut(s)	188, 331
BmuI	ACTGGG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	186, 268
BsaXI	ACNNNNNCTCC	4 cut(s)	437, 467, 552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	3 cut(s)	60, 249, 303
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	186, 268
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	3 cut(s)	60, 249, 303
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	2 cut(s)	56, 463
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	512
Bsh1236I	CGCG	2 cut(s)	130, 132
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	3 cut(s)	250, 316, 486
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	227, 457
Bsp19I	CCATGG	1 cut(s)	186
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	2 cut(s)	130, 132
BspLI	GGNNCC	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	222, 465
BspQI	GCTCTTC	1 cut(s)	515
BspT107I	GGYRCC	1 cut(s)	122
BsrDI	GCAATG	3 cut(s)	60, 249, 303
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	2 cut(s)	186, 268
BssMI	GATC	2 cut(s)	227, 457
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	186, 268
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	515
BstACI	GRCGYC	1 cut(s)	374
BstDEI	CTNAG	2 cut(s)	433, 537
BstDSI	CCRYGG	1 cut(s)	186
BstFNI	CGCG	2 cut(s)	130, 132
BstHHI	GCGC	1 cut(s)	132
BstKTI	GATC	2 cut(s)	230, 460
BstMAI	GTCTC	3 cut(s)	250, 316, 486
BstMBI	GATC	2 cut(s)	227, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	91
BstUI	CGCG	2 cut(s)	130, 132
BstV1I	GCAGC	1 cut(s)	512
BstX2I	RGATCY	2 cut(s)	227, 457
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	2 cut(s)	227, 457
BsuRI	GGCC	1 cut(s)	273
BtgI	CCRYGG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	89
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	132
Cfr13I	GGNCC	1 cut(s)	272
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	3 cut(s)	187, 202, 581
CviJI	RGCY	4 cut(s)	8, 273, 525, 587
CviKI_1	RGCY	4 cut(s)	8, 273, 525, 587
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	433, 537
DpnI	GATC	2 cut(s)	229, 459
DpnII	GATC	2 cut(s)	227, 457
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco130I	CCWWGG	2 cut(s)	186, 268
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	186, 268
EcoT22I	ATGCAT	1 cut(s)	203
ErhI	CCWWGG	2 cut(s)	186, 268
FaeI	CATG	3 cut(s)	190, 205, 584
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FatI	CATG	3 cut(s)	186, 201, 580
FauNDI	CATATG	2 cut(s)	178, 479
Fnu4HI	GCNGC	1 cut(s)	526
Fsp4HI	GCNGC	1 cut(s)	526
FspBI	CTAG	2 cut(s)	26, 225
GlaI	GCGC	1 cut(s)	131
GluI	GCNGC	1 cut(s)	526
HaeIII	GGCC	1 cut(s)	273
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	132
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	190, 205, 584
Hin6I	GCGC	1 cut(s)	130
HinP1I	GCGC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	238, 332, 563
HphI	GGTGA	1 cut(s)	581
Hpy188I	TCNGA	1 cut(s)	436
HpyAV	CCTTC	4 cut(s)	388, 418, 467, 551
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	110, 201, 254, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	433, 537
HpySE526I	ACGT	1 cut(s)	113
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	190, 205, 584
HspAI	GCGC	1 cut(s)	130
KpnI	GGTACC	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	227, 457
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	84, 105, 105, 220, 247, 288, 294
Lsp1109I	GCAGC	1 cut(s)	512
LweI	GCATC	2 cut(s)	188, 331
MaeI	CTAG	2 cut(s)	26, 225
MaeII	ACGT	1 cut(s)	113
MalI	GATC	2 cut(s)	229, 459
MboI	GATC	2 cut(s)	227, 457
MboII	GAAGA	3 cut(s)	403, 532, 566
MflI	RGATCY	2 cut(s)	227, 457
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	4 cut(s)	33, 76, 357, 570
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	8 cut(s)	7, 34, 88, 241, 391, 409, 441, 444
Mph1103I	ATGCAT	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	2 cut(s)	130, 132
MwoI	GCNNNNNNNGC	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	186
NdeI	CATATG	2 cut(s)	178, 479
NdeII	GATC	2 cut(s)	227, 457
NlaIII	CATG	3 cut(s)	190, 205, 584
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	203
PaqCI	CACCTGC	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	238, 332, 563
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	527
PsiI	TTATAA	1 cut(s)	356
Psp1406I	AACGTT	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	2 cut(s)	227, 457
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	515
SatI	GCNGC	1 cut(s)	526
Sau3AI	GATC	2 cut(s)	227, 457
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	188, 331
Sse9I	AATT	4 cut(s)	33, 76, 357, 570
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	26, 225
StyD4I	CCNGG	1 cut(s)	233
StyI	CCWWGG	2 cut(s)	186, 268
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	1 cut(s)	325
TasI	AATT	4 cut(s)	33, 76, 357, 570
TfiI	GAWTC	3 cut(s)	238, 332, 563
TseI	GCWGC	1 cut(s)	525
TspDTI	ATGAA	7 cut(s)	186, 207, 218, 292, 311, 324, 597
XapI	RAATTY	1 cut(s)	33
XspI	CTAG	2 cut(s)	26, 225
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.