Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013303

Physical Location & Seq

Genomic Coordinates Forward (+)

14717151 .. 14725111

Gene Structure 7961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0165100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGCAGATTGTTATGAGGATGAGAGAGAAGCATTTTATGCTGTTTGTGTTATTTCTTTGCTTATTACCAATCTGTACCTCATCATCCCCATCTCCACCCCATTCTTACAACCCTACCCAAAACCCGGTCGCCAAGAAGCATTTCGTGCTGGTTCACGGAGCCGGTCACGGGGCATGGTGTTGGTACAAGGTGGCAACTCTGCTGAAACAGTCAGGCCACAACGTTACCACTCTGGACCTTGCAGCATCTGGAATTGACCCAACTCAGATACAACAAGTTCGTTCTTTCGCGGTTTACGTTGAACCGTTGACGAATTTCATGGAGTCTCTCCCGCCAAAGGAGAGGGTTGTTCTGGTTGGCCACAGCTTGGGTGGAGTAGCCTTATCTATTGCCATGGAGAGGTTCCCTCAGAAAATTTCTGTTGCGGTTTTTGCCACCGCTGCCATGCCTGGTCCTGATATCAGTTTGTTGACTATACTTCAAGAGATTAGCAGTCATTTGGATTTTATGGACTCTCAATATAGATTTGATGATGGCGCCACGAAACCAGCAACCTCGGCACTCTTGGGGCCGAAGGTGCTAACCTCATCGTTCTACCAGCTATCGCCACCAGAGAGCCTTAAACTGAAGCAGAGGGGCAGCAAAGTTACAAGAAAGGAGCAGAAAAGGCTAGAGAGTAGAAGCAGAAAAAGACTGGGGAGCAGCAAAACAAAAAGAGAGGCAACGAGAGAAGAAAAAGAGAGAGAGAGAGAGTGTAGAGGGGAAAAAACGCAGGAGCAGAGAAAGAAGAGGAAGGGAAGAAGAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0016740 GO:0016782 GO:0016783 GO:0018130 GO:0019538 GO:0019637 GO:0019693 GO:0030366 GO:0032324 GO:0034641 GO:0042278 GO:0043170 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0051186 GO:0051188 GO:0051189 GO:0055086 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04122 map00790 map01100 map04122

Pfam Domains

Protein Families

MoaE

Protein Analysis

271

Amino Acids

30.58

Weight (kDa)

9.86

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	45 - 152	1.3e-11	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	48 - 207	2.6e-15	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	49 - 164	1e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37920
fragaria_vesca	FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990
malus_domestica	MD01G1044700.v1.1
prunus_persica	Prupe.6G209500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110011
rosa_laevigata	RLG00000017777
rosa_multiflora	Rmu_sc0001870.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133780
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216700 Rh2BG226700 Rh2CG218900 Rh2DG222300
rosa_wichuraiana	Rw2G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccB7I	CCANNNNNTGG	1 cut(s)	370
AccII	CGCG	1 cut(s)	293
AciI	CCGC	4 cut(s)	293, 335, 428, 441
AclI	AACGTT	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	316, 417
AcuI	CTGAAG	1 cut(s)	650
AcyI	GRCGYC	1 cut(s)	540
AfaI	GTAC	2 cut(s)	79, 188
AfiI	CCNNNNNNNGG	5 cut(s)	127, 171, 340, 370, 402
AgsI	TTSAA	2 cut(s)	305, 485
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	128, 160
AluBI	AGCT	2 cut(s)	369, 604
AluI	AGCT	2 cut(s)	369, 604
Alw26I	GTCTC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	217, 361, 572
ApeKI	GCWGC	4 cut(s)	245, 443, 642, 705
ApoI	RAATTY	2 cut(s)	316, 417
Asp700I	GAANNNNTTC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	3 cut(s)	238, 455, 572
AsuC2I	CCSGG	1 cut(s)	128
AvaII	GGWCC	2 cut(s)	238, 455
BalI	TGGCCA	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	257, 430, 654, 717
BccI	CCATC	2 cut(s)	100, 530
BciT130I	CCWGG	1 cut(s)	453
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	333
BfaI	CTAG	1 cut(s)	674
BfoI	RGCGCY	1 cut(s)	543
BisI	GCNGC	4 cut(s)	246, 444, 643, 706
BlsI	GCNGC	4 cut(s)	247, 445, 644, 707
Bme1390I	CCNGG	2 cut(s)	128, 453
Bme18I	GGWCC	2 cut(s)	238, 455
BmgT120I	GGNCC	3 cut(s)	238, 455, 572
BmiI	GGNNCC	4 cut(s)	163, 407, 541, 573
BmrFI	CCNGG	2 cut(s)	128, 453
BmrI	ACTGGG	1 cut(s)	707
BmsI	GCATC	1 cut(s)	257
BmuI	ACTGGG	1 cut(s)	707
BplI	GAGNNNNNCTC	2 cut(s)	394, 426
BpuMI	CCSGG	1 cut(s)	128
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	2 cut(s)	396, 558
Bsc4I	CCNNNNNNNGG	5 cut(s)	127, 171, 340, 370, 402
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	396, 558
BseGI	GGATG	2 cut(s)	27, 86
BseLI	CCNNNNNNNGG	5 cut(s)	127, 171, 340, 370, 402
BseMII	CTCAG	2 cut(s)	281, 425
BseNI	ACTGG	1 cut(s)	702
BseXI	GCAGC	4 cut(s)	257, 430, 654, 717
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	3 cut(s)	219, 363, 574
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	128, 165
BslI	CCNNNNNNNGG	5 cut(s)	127, 171, 340, 370, 402
BsmAI	GTCTC	1 cut(s)	333
BsnI	GGCC	3 cut(s)	219, 363, 574
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	4 cut(s)	293, 335, 428, 441
BspANI	GGCC	3 cut(s)	219, 363, 574
BspCNI	CTCAG	2 cut(s)	280, 424
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	4 cut(s)	163, 407, 541, 573
BspT107I	GGYRCC	1 cut(s)	539
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	702
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	396, 558
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	2 cut(s)	213, 309
Bst6I	CTCTTC	2 cut(s)	785, 799
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	2 cut(s)	40, 148
BstDEI	CTNAG	2 cut(s)	267, 411
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	27, 86
BstFNI	CGCG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	542
BstMAI	GTCTC	1 cut(s)	333
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	7 cut(s)	40, 148, 434, 443, 560, 580, 670
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	2 cut(s)	126, 451
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	4 cut(s)	257, 430, 654, 717
BsuRI	GGCC	3 cut(s)	219, 363, 574
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	27, 86
CaiI	CAGNNNCTG	1 cut(s)	251
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	238, 455, 572
Csp6I	GTAC	2 cut(s)	78, 187
CviAII	CATG	4 cut(s)	177, 322, 397, 448
CviJI	RGCY	9 cut(s)	164, 219, 363, 369, 383, 574, 604, 621, 673
CviKI_1	RGCY	9 cut(s)	164, 219, 363, 369, 383, 574, 604, 621, 673
CviQI	GTAC	2 cut(s)	78, 187
DdeI	CTNAG	2 cut(s)	267, 411
DinI	GGCGCC	1 cut(s)	541
EaeI	YGGCCR	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	785, 799
EarI	CTCTTC	2 cut(s)	785, 799
Eco130I	CCWWGG	1 cut(s)	396
Eco32I	GATATC	1 cut(s)	463
Eco47I	GGWCC	2 cut(s)	238, 455
Eco57I	CTGAAG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	451
EcoRV	GATATC	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	396
EgeI	GGCGCC	1 cut(s)	541
EheI	GGCGCC	1 cut(s)	541
ErhI	CCWWGG	1 cut(s)	396
FaeI	CATG	4 cut(s)	180, 325, 400, 451
FaiI	YATR	9 cut(s)	17, 41, 178, 323, 398, 449, 479, 512, 525
FatI	CATG	4 cut(s)	176, 321, 396, 447
FauI	CCCGC	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	246, 444, 643, 706
FokI	GGATG	2 cut(s)	34, 73
Fsp4HI	GCNGC	4 cut(s)	246, 444, 643, 706
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	4 cut(s)	246, 444, 643, 706
HaeII	RGCGCY	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	219, 363, 574
HapII	CCGG	2 cut(s)	128, 165
HhaI	GCGC	1 cut(s)	542
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	180, 325, 400, 451
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	2 cut(s)	312, 474
HindII	GTYRAC	2 cut(s)	312, 474
HinfI	GANTC	2 cut(s)	326, 515
HpaII	CCGG	2 cut(s)	128, 165
Hpy166II	GTNNAC	4 cut(s)	157, 298, 312, 474
Hpy188I	TCNGA	2 cut(s)	270, 414
Hpy188III	TCNNGA	4 cut(s)	236, 252, 458, 485
Hpy8I	GTNNAC	4 cut(s)	157, 298, 312, 474
HpyAV	CCTTC	2 cut(s)	571, 790
HpyCH4III	ACNGT	2 cut(s)	213, 309
HpyCH4IV	ACGT	2 cut(s)	225, 300
HpyCH4V	TGCA	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	7 cut(s)	40, 148, 434, 443, 560, 580, 670
HpyF3I	CTNAG	2 cut(s)	267, 411
HpySE526I	ACGT	2 cut(s)	225, 300
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	4 cut(s)	180, 325, 400, 451
HspAI	GCGC	1 cut(s)	540
KasI	GGCGCC	1 cut(s)	539
LmnI	GCTCC	5 cut(s)	4, 161, 661, 702, 778
Lsp1109I	GCAGC	4 cut(s)	257, 430, 654, 717
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	2 cut(s)	225, 300
MaeIII	GTNAC	3 cut(s)	167, 226, 649
MboII	GAAGA	4 cut(s)	746, 802, 813, 816
MlsI	TGGCCA	1 cut(s)	363
MluCI	AATT	3 cut(s)	255, 316, 417
MluNI	TGGCCA	1 cut(s)	363
Mly113I	GGCGCC	1 cut(s)	540
MlyI	GAGTC	2 cut(s)	335, 509
Mox20I	TGGCCA	1 cut(s)	363
MroXI	GAANNNNTTC	1 cut(s)	143
MscI	TGGCCA	1 cut(s)	363
MseI	TTAA	1 cut(s)	624
Msp20I	TGGCCA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	2 cut(s)	128, 165
MspR9I	CCNGG	2 cut(s)	128, 453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	7 cut(s)	40, 148, 434, 443, 560, 580, 670
NarI	GGCGCC	1 cut(s)	540
NciI	CCSGG	1 cut(s)	128
NcoI	CCATGG	1 cut(s)	396
NlaIII	CATG	4 cut(s)	180, 325, 400, 451
NlaIV	GGNNCC	4 cut(s)	163, 407, 541, 573
NmeAIII	GCCGAG	1 cut(s)	539
NmuCI	GTSAC	1 cut(s)	167
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	370
PkrI	GCNGC	4 cut(s)	247, 445, 644, 707
PleI	GAGTC	2 cut(s)	334, 509
PluTI	GGCGCC	1 cut(s)	543
PpsI	GAGTC	2 cut(s)	334, 509
Psp1406I	AACGTT	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	4 cut(s)	163, 407, 541, 573
PspPI	GGNCC	3 cut(s)	238, 455, 572
PstNI	CAGNNNCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	79, 188
RsaNI	GTAC	2 cut(s)	78, 187
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	4 cut(s)	246, 444, 643, 706
Sau96I	GGNCC	3 cut(s)	238, 455, 572
SchI	GAGTC	2 cut(s)	335, 509
ScrFI	CCNGG	2 cut(s)	128, 453
SfaNI	GCATC	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	541
SinI	GGWCC	2 cut(s)	238, 455
Sse9I	AATT	3 cut(s)	255, 316, 417
SsiI	CCGC	4 cut(s)	293, 335, 428, 441
SspDI	GGCGCC	1 cut(s)	539
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	2 cut(s)	126, 451
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	2 cut(s)	213, 309
TaiI	ACGT	2 cut(s)	228, 303
TasI	AATT	3 cut(s)	255, 316, 417
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	4 cut(s)	245, 443, 642, 705
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	310
TspGWI	ACGGA	1 cut(s)	174
Van91I	CCANNNNNTGG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	238, 455
XapI	RAATTY	2 cut(s)	316, 417
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.