Prupe.6G209500_v2.0.a1

protein At4g37920, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013303
Physical Location & Seq
Reverse (-)
21788233 .. 21791436
3204 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G209500.1

Sequence Viewer

Length: 1284 bp
ATGAGCAATTTCATGGCATTAGAGCTCTCAAACTCCATAACCAAGCCCTCCATCTTCTTCGACGCCACAACTTTCTTCCCACCCAACGAAAATGTGCCCCCAACAACCCTTCTAATACCACCCATATCCTTTGCCTCTCTTAAGTCCAAGCACAGAAGAAAGACAAGGGCAGCCCAGTCAAGCCCCACTACCAGTCCTCAAGCAAGTAACATAGCCACTGCCCAAGTGGCAGAGCAAGTAGAGGTTGAAGTTGCTGAGGGTTACACCATGACTCAATTTTGTGATAAGATAATTGATGTTTTCATGAATGAGAAGCCCAGGGCAAAGGAATGGAGGAAGTTTTTGGTATTTAGGGAGGATTGGGAGAAATATAAGGAAAGCTTTTATAACCGGTGTAGGACACGGGCAGATATGGAGGGTGACCAAACTATGAAAGAAAAGTTTACCTCTTTGGGGAGAAAGGTGAAGAAGATTGATGATGAAATGGAAAGGCACAGTGAACTTCTGAAGGAGATACAAGACAATCCAACTGACGTTAATGCAATAGTTGCACGGAGGCGTAAAGACTTCACAGAGGAATTCTTTCGCCACGTTAACCTACTTTCGGAAGTTTATGATAGTTTGGAAGATCGTGATGCAATGGCCCGGCTGGGTGCTAGATGCTTGTCTGCCGTCAGTGCTTATGATAACACGCTGGAATATGTGGAGACATTAGATACTGCTCAGGCCAAATTTGATGACATGCTAAATTCTCCTTCAGTTGATGTAGCATGTGAGAAGATTAAAAGCCTTGCCAAGGCAAAGGAGCTTGATTCTTCGTTGGTATTATTGATAAACAGTGCTTGGGCTTCTGCAAAGGAGTCCACAACGATGAAGAATGAGGTCAAAGACATAATGTATCATTTGTACAAGGCCACAAAAAGCAGTCTTCGGAGCATTGCACCAAAAGAAATAAAACTACTCAAGCATTTGCTGAACATTACAGATCCTGAAGAGAGATTCTCGGCATTGGCAACAGCCTTCTCCCCTGGTGATGGACCTGAAGCCAAGGATCCCAAAGCCGTATACACTACGCCCAAAGAGCTTCACAAGTGGATTAAGATCATGCTTGATGCATACCATCTAAATGCGGAAGAAACTGACATTAGGGAAGCCAAGCAGATGACTCAGCCTGTGGTTATACAAAGGCTGTTCATCCTCAAGGAAACTATTGAAGAGGAATATTTGGAACGAAGCACAGATCAGAAGTCTCAAACAGAGGATACCAAACCAGAGGAATTATGA

Protein Analysis

428

Amino Acids

48.96

Weight (kDa)

5.56

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013303)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G37920
fragaria_vesca FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990
malus_domestica MD01G1044700.v1.1
prunus_persica Prupe.6G209500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0110011
rosa_laevigata RLG00000017777
rosa_multiflora Rmu_sc0001870.1_g000006
rosa_roxburghii Rroxscaffold_2G00133780
rosa_rugosa Rorug02G0165100
rosa_samantha Rh2AG216700 Rh2BG226700 Rh2CG218900 Rh2DG222300
rosa_wichuraiana Rw2G016750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 387
AccI GTMKAC 1 cut(s) 1065
AciI CCGC 1 cut(s) 1130
AclWI GGATC 3 cut(s) 980, 1046, 1059
AcsI RAATTY 3 cut(s) 578, 731, 748
AcuI CTGAAG 4 cut(s) 527, 741, 1011, 1062
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 908
AfiI CCNNNNNNNGG 4 cut(s) 453, 604, 796, 1034
AflII CTTAAG 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 2 cut(s) 248, 1214
AjnI CCWGG 2 cut(s) 317, 1027
AluBI AGCT 4 cut(s) 25, 381, 808, 1084
AluI AGCT 4 cut(s) 25, 381, 808, 1084
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 2 cut(s) 701, 1254
AlwI GGATC 3 cut(s) 980, 1046, 1059
AlwNI CAGNNNCTG 1 cut(s) 989
AoxI GGCC 3 cut(s) 642, 726, 912
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 3 cut(s) 578, 731, 748
AsiGI ACCGGT 1 cut(s) 390
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 643, 1037
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 3 cut(s) 431, 475, 1043
AvaII GGWCC 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 99
BamHI GGATCC 1 cut(s) 1051
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 920
Bbv12I GWGCWC 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 182
BccI CCATC 3 cut(s) 59, 1028, 1128
BceAI ACGGC 2 cut(s) 656, 1046
BciT130I CCWGG 2 cut(s) 319, 1029
BciVI GTATCC 1 cut(s) 1255
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 701, 1254
BfaI CTAG 1 cut(s) 657
BfrI CTTAAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 1255
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 3 cut(s) 319, 646, 1029
Bme18I GGWCC 1 cut(s) 1037
BmgT120I GGNCC 2 cut(s) 643, 1037
BmiI GGNNCC 1 cut(s) 1053
BmrFI CCNGG 3 cut(s) 319, 646, 1029
BmrI ACTGGG 1 cut(s) 169
BmsI GCATC 3 cut(s) 625, 650, 1102
BmuI ACTGGG 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 920
BplI GAGNNNNNCTC 2 cut(s) 986, 1018
Bpu10I CCTNAGC 2 cut(s) 255, 723
BpuEI CTTGAG 3 cut(s) 183, 947, 1184
BpuMI CCSGG 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 1100
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 317, 318, 795, 1027, 1047
BsaWI WCCGGW 1 cut(s) 390
Bsc4I CCNNNNNNNGG 4 cut(s) 453, 604, 796, 1034
Bse118I RCCGGY 1 cut(s) 390
Bse1I ACTGG 2 cut(s) 175, 192
Bse3DI GCAATG 2 cut(s) 645, 936
Bse8I GATNNNNATC 1 cut(s) 1100
BseBI CCWGG 2 cut(s) 319, 1029
BseDI CCNNGG 5 cut(s) 317, 318, 795, 1027, 1047
BseGI GGATG 1 cut(s) 1194
BseJI GATNNNNATC 1 cut(s) 1100
BseLI CCNNNNNNNGG 4 cut(s) 453, 604, 796, 1034
BseMI GCAATG 2 cut(s) 645, 936
BseMII CTCAG 3 cut(s) 246, 737, 1181
BseNI ACTGG 2 cut(s) 175, 192
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 649
BshFI GGCC 3 cut(s) 644, 728, 914
BshTI ACCGGT 1 cut(s) 390
BsiHKAI GWGCWC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 391, 646
BslI CCNNNNNNNGG 4 cut(s) 453, 604, 796, 1034
BsmAI GTCTC 2 cut(s) 701, 1254
BsnI GGCC 3 cut(s) 644, 728, 914
Bsp1286I GDGCHC 2 cut(s) 27, 99
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 5 cut(s) 628, 985, 1051, 1101, 1240
BspACI CCGC 1 cut(s) 1130
BspANI GGCC 3 cut(s) 644, 728, 914
BspCNI CTCAG 3 cut(s) 247, 736, 1180
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 1053
BspPI GGATC 3 cut(s) 980, 1046, 1059
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 2 cut(s) 645, 936
BsrFI RCCGGY 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 2 cut(s) 175, 192
BssAI RCCGGY 1 cut(s) 390
BssECI CCNNGG 5 cut(s) 317, 318, 795, 1027, 1047
BssMI GATC 5 cut(s) 628, 985, 1051, 1101, 1240
BssNAI GTATAC 1 cut(s) 1066
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 2 cut(s) 795, 1047
Bst1107I GTATAC 1 cut(s) 1066
Bst2UI CCWGG 2 cut(s) 319, 1029
Bst4CI ACNGT 2 cut(s) 497, 839
Bst6I CTCTTC 2 cut(s) 987, 1209
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 906
BstDEI CTNAG 3 cut(s) 255, 723, 1167
BstEII GGTNACC 1 cut(s) 419
BstENI CCTNNNNNAGG 1 cut(s) 794
BstF5I GGATG 1 cut(s) 1194
BstKTI GATC 5 cut(s) 631, 988, 1054, 1104, 1243
BstMAI GTCTC 2 cut(s) 701, 1254
BstMBI GATC 5 cut(s) 628, 985, 1051, 1101, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 227, 548, 677, 1081
BstNI CCWGG 2 cut(s) 319, 1029
BstNSI RCATGY 2 cut(s) 745, 774
BstPI GGTNACC 1 cut(s) 419
BstSCI CCNGG 3 cut(s) 317, 644, 1027
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 2 cut(s) 985, 1051
BstYI RGATCY 2 cut(s) 985, 1051
BstZ17I GTATAC 1 cut(s) 1066
BsuI GTATCC 1 cut(s) 1255
BsuRI GGCC 3 cut(s) 644, 728, 914
BtsCI GGATG 1 cut(s) 1194
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 4 cut(s) 216, 502, 682, 844
CaiI CAGNNNCTG 1 cut(s) 989
CciI TCATGA 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 2 cut(s) 643, 1037
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 907
CspAI ACCGGT 1 cut(s) 390
CviAII CATG 6 cut(s) 13, 268, 304, 742, 771, 1105
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 3 cut(s) 255, 723, 1167
DpnI GATC 5 cut(s) 630, 987, 1053, 1103, 1242
DpnII GATC 5 cut(s) 628, 985, 1051, 1101, 1240
Eam1104I CTCTTC 2 cut(s) 987, 1209
EarI CTCTTC 2 cut(s) 987, 1209
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 2 cut(s) 795, 1047
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 1037
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 4 cut(s) 527, 741, 1011, 1062
Eco91I GGTNACC 1 cut(s) 419
EcoICRI GAGCTC 1 cut(s) 25
EcoNI CCTNNNNNAGG 1 cut(s) 794
EcoO65I GGTNACC 1 cut(s) 419
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 2 cut(s) 317, 1027
EcoT14I CCWWGG 2 cut(s) 795, 1047
EcoT22I ATGCAT 1 cut(s) 1117
EcoT38I GRGCYC 1 cut(s) 27
ErhI CCWWGG 2 cut(s) 795, 1047
FaeI CATG 6 cut(s) 16, 271, 307, 745, 774, 1108
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FatI CATG 6 cut(s) 12, 267, 303, 741, 770, 1104
FblI GTMKAC 1 cut(s) 1065
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 1181
FriOI GRGCYC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 657
GluI GCNGC 1 cut(s) 171
GsaI CCCAGC 1 cut(s) 653
HaeIII GGCC 3 cut(s) 644, 728, 914
HapII CCGG 2 cut(s) 391, 646
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 16, 271, 307, 745, 774, 1108
HincII GTYRAC 1 cut(s) 595
HindII GTYRAC 1 cut(s) 595
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 5 cut(s) 271, 812, 860, 999, 1165
HpaI GTTAAC 1 cut(s) 595
HpaII CCGG 2 cut(s) 391, 646
HphI GGTGA 3 cut(s) 431, 475, 1043
Hpy166II GTNNAC 5 cut(s) 444, 500, 595, 864, 1066
Hpy188I TCNGA 4 cut(s) 507, 607, 933, 1245
Hpy188III TCNNGA 3 cut(s) 304, 632, 989
Hpy8I GTNNAC 5 cut(s) 444, 500, 595, 864, 1066
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 4 cut(s) 119, 502, 765, 1030
HpyCH4III ACNGT 2 cut(s) 497, 839
HpyCH4IV ACGT 2 cut(s) 534, 591
HpyCH4V TGCA 6 cut(s) 542, 551, 638, 854, 941, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 548, 677, 1081
HpyF3I CTNAG 3 cut(s) 255, 723, 1167
HpySE526I ACGT 2 cut(s) 534, 591
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 16, 271, 307, 745, 774, 1108
KspAI GTTAAC 1 cut(s) 595
Kzo9I GATC 5 cut(s) 628, 985, 1051, 1101, 1240
LmnI GCTCC 2 cut(s) 805, 933
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 3 cut(s) 625, 650, 1102
MaeI CTAG 1 cut(s) 657
MaeII ACGT 2 cut(s) 534, 591
MaeIII GTNAC 3 cut(s) 206, 260, 419
MalI GATC 5 cut(s) 630, 987, 1053, 1103, 1242
MboI GATC 5 cut(s) 628, 985, 1051, 1101, 1240
MflI RGATCY 2 cut(s) 985, 1051
MhlI GDGCHC 2 cut(s) 27, 99
MluCI AATT 7 cut(s) 7, 275, 291, 578, 731, 748, 1277
MlyI GAGTC 3 cut(s) 265, 869, 1159
MmeI TCCRAC 1 cut(s) 551
Mph1103I ATGCAT 1 cut(s) 1117
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 5 cut(s) 141, 537, 594, 783, 1098
MslI CAYNNNNRTG 2 cut(s) 869, 1125
MspCI CTTAAG 1 cut(s) 140
MspI CCGG 2 cut(s) 391, 646
MspR9I CCNGG 3 cut(s) 319, 646, 1029
MvaI CCWGG 2 cut(s) 319, 1029
MwoI GCNNNNNNNGC 4 cut(s) 227, 548, 677, 1081
NciI CCSGG 1 cut(s) 646
NdeII GATC 5 cut(s) 628, 985, 1051, 1101, 1240
NlaIII CATG 6 cut(s) 16, 271, 307, 745, 774, 1108
NlaIV GGNNCC 1 cut(s) 1053
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 1117
NspI RCATGY 2 cut(s) 745, 774
PagI TCATGA 1 cut(s) 303
PasI CCCWGGG 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 812, 999
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 3 cut(s) 265, 868, 1159
PpsI GAGTC 3 cut(s) 265, 868, 1159
PsiI TTATAA 1 cut(s) 387
Psp124BI GAGCTC 1 cut(s) 27
Psp6I CCWGG 2 cut(s) 317, 1027
PspEI GGTNACC 1 cut(s) 419
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 2 cut(s) 317, 1027
PspN4I GGNNCC 1 cut(s) 1053
PspPI GGNCC 2 cut(s) 643, 1037
PstNI CAGNNNCTG 1 cut(s) 989
PsuI RGATCY 2 cut(s) 985, 1051
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
RseI CAYNNNNRTG 2 cut(s) 869, 1125
SacI GAGCTC 1 cut(s) 27
SaqAI TTAA 5 cut(s) 141, 537, 594, 783, 1098
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 5 cut(s) 628, 985, 1051, 1101, 1240
Sau96I GGNCC 2 cut(s) 643, 1037
SchI GAGTC 3 cut(s) 265, 869, 1159
ScrFI CCNGG 3 cut(s) 319, 646, 1029
SduI GDGCHC 2 cut(s) 27, 99
SfaNI GCATC 3 cut(s) 625, 650, 1102
SinI GGWCC 1 cut(s) 1037
SmiMI CAYNNNNRTG 2 cut(s) 869, 1125
SmlI CTYRAG 4 cut(s) 140, 198, 962, 1199
SmoI CTYRAG 4 cut(s) 140, 198, 962, 1199
Sse9I AATT 7 cut(s) 7, 275, 291, 578, 731, 748, 1277
SsiI CCGC 1 cut(s) 1130
SspI AATATT 1 cut(s) 1223
SspMI CTAG 1 cut(s) 657
SstI GAGCTC 1 cut(s) 27
StyD4I CCNGG 3 cut(s) 317, 644, 1027
StyI CCWWGG 2 cut(s) 795, 1047
TaaI ACNGT 2 cut(s) 497, 839
TaiI ACGT 2 cut(s) 537, 594
TaqI TCGA 1 cut(s) 60
TasI AATT 7 cut(s) 7, 275, 291, 578, 731, 748, 1277
TatI WGTACW 1 cut(s) 906
TfiI GAWTC 2 cut(s) 812, 999
Tru1I TTAA 5 cut(s) 141, 537, 594, 783, 1098
Tru9I TTAA 5 cut(s) 141, 537, 594, 783, 1098
TscAI CASTG 4 cut(s) 223, 502, 682, 844
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 292, 320, 446, 495, 887, 1183
TspGWI ACGGA 1 cut(s) 568
TspRI CASTG 4 cut(s) 223, 502, 682, 844
Vha464I CTTAAG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 1037
XagI CCTNNNNNAGG 1 cut(s) 794
XapI RAATTY 3 cut(s) 578, 731, 748
XceI RCATGY 2 cut(s) 745, 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.