Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013303

Physical Location & Seq

Genomic Coordinates Reverse (-)

17828277 .. 17830465

Gene Structure 2189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G37920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGCGAATTTACTGGAAACATCAATCTTTTTCTCCTCTGCTGATAAATTACTGTCTTTCCCGCCTAAGAATTCTCAAACCCATCATCTCCCTTTCTCTGCTTTCATCAATGGAGGAAGAAAGATACGCAAAAGCTCAACTATCACCTTTGCTACCGACACTGTCACTTACAATGGCACTACAAGTGCGGAAGTAAAAAGCTCTGTTGAGGATCCAATGGAAGTTGAGGTTGCTGAAGGTTACACTATGGCTCAGTTTTGTGACAAGATTATTGATCTCTTCTTGAATGAGAAACCTAAAGTTAAACAATGGAAGACGTATTTGGTTTTAAGAGATGAATGGAACAAGTACAGTGTTAATTTCTATAAGCGTTGCAGAATCCGAGCTGATACCGAAACTGATCCTATATTGAAGCAGAAACTGGTATCTTTGGAAAGTAAAGTCAAGAAGATAGATAAGGAAATGGAGAAACACAATGACCTTTTGAAGGAGATTCAAGAAAACCCAACAGACATAAACGCAATCGCTGCCAAGAGACGCAGAGACTTTACGGGAGAGTTTTTCCGCTATGTTACTTTGTTATCAGAAACTCTTGATGGCTTGGAAGACCGAGATGCTGTTGCGAGGCTTGCAACTAGATGTTTATCTGCTGTGAGTGCTTATGACAACACGTTGGAGAGTGTTGAGACTCTAGATACTGCTCAAGCAAAGTTTGAAGATATTTTAAACTCTCCATCCGTGGATTCTGCTTGCGAAAAGATCAGAAGTTTAGCCAAGGCAAAGGAGCTTGATTCCTCATTGATCTTATTGATCAACAGTGCATACGCTGCTGCAAAAGAGTCTCAAACTGTTACGAACGAGGCTAAAGACATAATGTATCATTTATACAAAGCTACAAAGAGCAGTCTTAGAAGCATCACACCGAAAGAGATCAAACTTTTAAAGTACTTACTCAACATAACAGACCCCGAAGAACGATTCTCTGCCCTAGCTACAGCATTCTCTCCTGGTGATGACCACGAAGCTAAGGACCCTAAAGCATTATACACGACGCCAAAGGAGCTGCATAAGTGGATAAAGATAATGCTTGATGCTTACCATCTCAACAAAGAAGAAACAGACATTAAAGAAGCTAAACAGATGAGCCAACCTATCGTTATTCAGCGGCTTTTCATTCTCAAGGACACTATCGAAGACGAGTATTTAGACAAGAAAACAATCGTGGCTGATGAAACTCCAAAGAAGGAAGAAGAAGATACGACTATTGAAGATTTTTTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

427

Amino Acids

48.73

Weight (kDa)

5.47

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37920
fragaria_vesca	FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990
malus_domestica	MD01G1044700.v1.1
prunus_persica	Prupe.6G209500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110011
rosa_laevigata	RLG00000017777
rosa_multiflora	Rmu_sc0001870.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133780
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216700 Rh2BG226700 Rh2CG218900 Rh2DG222300
rosa_wichuraiana	Rw2G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	62, 188, 565, 1165
AclWI	GGATC	3 cut(s)	206, 219, 395
AcsI	RAATTY	2 cut(s)	7, 70
AcuI	CTGAAG	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	1052
AfaI	GTAC	2 cut(s)	350, 947
AfiI	CCNNNNNNNGG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	7 cut(s)	286, 412, 487, 497, 716, 1268, 1279
AjnI	CCWGG	1 cut(s)	1006
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	9 cut(s)	135, 201, 386, 787, 893, 992, 1025, 1063, 1133
AluI	AGCT	9 cut(s)	135, 201, 386, 787, 893, 992, 1025, 1063, 1133
Alw26I	GTCTC	4 cut(s)	529, 537, 680, 846
AlwI	GGATC	3 cut(s)	206, 219, 395
AlwNI	CAGNNNCTG	1 cut(s)	421
ApeKI	GCWGC	4 cut(s)	527, 827, 830, 1063
ApoI	RAATTY	2 cut(s)	7, 70
AspS9I	GGNCC	1 cut(s)	1030
AsuHPI	GGTGA	2 cut(s)	136, 1022
AvaII	GGWCC	1 cut(s)	1030
BamHI	GGATCC	1 cut(s)	211
BbsI	GAAGAC	3 cut(s)	320, 612, 1200
BbvI	GCAGC	4 cut(s)	514, 814, 817, 1050
BccI	CCATC	4 cut(s)	90, 590, 742, 1107
BciT130I	CCWGG	1 cut(s)	1008
BclI	TGATCA	1 cut(s)	810
BcoDI	GTCTC	4 cut(s)	529, 537, 680, 846
BfaI	CTAG	3 cut(s)	636, 692, 989
BfmI	CTRYAG	1 cut(s)	993
BisI	GCNGC	5 cut(s)	528, 828, 831, 1064, 1166
BlsI	GCNGC	5 cut(s)	529, 829, 832, 1065, 1167
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	1 cut(s)	1008
Bme18I	GGWCC	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	1030
BmiI	GGNNCC	2 cut(s)	213, 1032
BmrFI	CCNGG	1 cut(s)	1008
BmsI	GCATC	3 cut(s)	604, 924, 1081
BpiI	GAAGAC	3 cut(s)	320, 612, 1200
Bpu10I	CCTNAGC	1 cut(s)	1026
BpuEI	CTTGAG	2 cut(s)	687, 1163
BsaBI	GATNNNNATC	1 cut(s)	643
BsaHI	GRCGYC	1 cut(s)	1052
BsaJI	CCNNGG	2 cut(s)	738, 774
Bsc4I	CCNNNNNNNGG	1 cut(s)	487
Bse1I	ACTGG	2 cut(s)	18, 426
Bse8I	GATNNNNATC	1 cut(s)	643
BseBI	CCWGG	1 cut(s)	1008
BseDI	CCNNGG	2 cut(s)	738, 774
BseGI	GGATG	1 cut(s)	734
BseJI	GATNNNNATC	1 cut(s)	643
BseLI	CCNNNNNNNGG	1 cut(s)	487
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	18, 426
BseRI	GAGGAG	1 cut(s)	25
BseXI	GCAGC	4 cut(s)	514, 814, 817, 1050
BslI	CCNNNNNNNGG	1 cut(s)	487
BsmAI	GTCTC	4 cut(s)	529, 537, 680, 846
BsmBI	CGTCTC	1 cut(s)	529
BsmI	GAATGC	1 cut(s)	998
Bsp143I	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
BspACI	CCGC	4 cut(s)	62, 188, 565, 1165
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	213, 1032
BspPI	GGATC	3 cut(s)	206, 219, 395
BsrI	ACTGG	2 cut(s)	18, 426
BssECI	CCNNGG	2 cut(s)	738, 774
BssMI	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
BssNI	GRCGYC	1 cut(s)	1052
BssT1I	CCWWGG	1 cut(s)	774
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	5 cut(s)	54, 163, 353, 818, 850
Bst6I	CTCTTC	1 cut(s)	284
BstACI	GRCGYC	1 cut(s)	1052
BstAPI	GCANNNNNTGC	2 cut(s)	527, 827
BstC8I	GCNNGC	2 cut(s)	630, 751
BstDEI	CTNAG	4 cut(s)	66, 252, 908, 1026
BstDSI	CCRYGG	1 cut(s)	738
BstENI	CCTNNNNNAGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	734
BstKTI	GATC	7 cut(s)	214, 277, 403, 762, 804, 813, 933
BstMAI	GTCTC	4 cut(s)	529, 537, 680, 846
BstMBI	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	527, 629, 656, 827, 1060
BstNI	CCWGG	1 cut(s)	1008
BstSCI	CCNGG	1 cut(s)	1006
BstSFI	CTRYAG	1 cut(s)	993
BstV1I	GCAGC	4 cut(s)	514, 814, 817, 1050
BstV2I	GAAGAC	3 cut(s)	320, 612, 1200
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtgI	CCRYGG	1 cut(s)	738
BtsCI	GGATG	1 cut(s)	734
BtsIMutI	CAGTG	3 cut(s)	159, 358, 823
Cac8I	GCNNGC	2 cut(s)	630, 751
CaiI	CAGNNNCTG	1 cut(s)	421
Cfr13I	GGNCC	1 cut(s)	1030
CseI	GACGC	2 cut(s)	546, 1060
Csp6I	GTAC	2 cut(s)	349, 946
CviQI	GTAC	2 cut(s)	349, 946
DdeI	CTNAG	4 cut(s)	66, 252, 908, 1026
DpnI	GATC	7 cut(s)	213, 276, 402, 761, 803, 812, 932
DpnII	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
DraI	TTTAAA	2 cut(s)	726, 942
Eam1104I	CTCTTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	255
EcoNI	CCTNNNNNAGG	1 cut(s)	485
EcoO109I	RGGNCCY	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	1006
EcoT14I	CCWWGG	1 cut(s)	774
ErhI	CCWWGG	1 cut(s)	774
Esp3I	CGTCTC	1 cut(s)	529
FauI	CCCGC	1 cut(s)	69
FbaI	TGATCA	1 cut(s)	810
Fnu4HI	GCNGC	5 cut(s)	528, 828, 831, 1064, 1166
FokI	GGATG	1 cut(s)	721
Fsp4HI	GCNGC	5 cut(s)	528, 828, 831, 1064, 1166
FspBI	CTAG	3 cut(s)	636, 692, 989
GluI	GCNGC	5 cut(s)	528, 828, 831, 1064, 1166
HgaI	GACGC	2 cut(s)	546, 1060
Hin1I	GRCGYC	1 cut(s)	1052
HinfI	GANTC	7 cut(s)	378, 493, 688, 743, 791, 839, 978
HphI	GGTGA	2 cut(s)	136, 1022
Hpy188I	TCNGA	3 cut(s)	383, 586, 764
Hpy188III	TCNNGA	5 cut(s)	283, 445, 497, 593, 692
Hpy99I	CGWCG	1 cut(s)	1054
HpyAV	CCTTC	3 cut(s)	230, 481, 1237
HpyCH4III	ACNGT	5 cut(s)	54, 163, 353, 818, 850
HpyCH4IV	ACGT	2 cut(s)	317, 671
HpyCH4V	TGCA	5 cut(s)	375, 632, 821, 833, 1066
HpyF10VI	GCNNNNNNNGC	5 cut(s)	527, 629, 656, 827, 1060
HpyF3I	CTNAG	4 cut(s)	66, 252, 908, 1026
HpySE526I	ACGT	2 cut(s)	317, 671
Hsp92I	GRCGYC	1 cut(s)	1052
Ksp22I	TGATCA	1 cut(s)	810
Kzo9I	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
LmnI	GCTCC	2 cut(s)	784, 1060
LpnPI	CCDG	3 cut(s)	407, 993, 1020
Lsp1109I	GCAGC	4 cut(s)	514, 814, 817, 1050
LweI	GCATC	3 cut(s)	604, 924, 1081
MaeI	CTAG	3 cut(s)	636, 692, 989
MaeII	ACGT	2 cut(s)	317, 671
MaeIII	GTNAC	5 cut(s)	163, 239, 260, 571, 850
MalI	GATC	7 cut(s)	213, 276, 402, 761, 803, 812, 932
MboI	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
MflI	RGATCY	1 cut(s)	211
MluCI	AATT	4 cut(s)	7, 47, 70, 358
MlyI	GAGTC	2 cut(s)	682, 848
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	7 cut(s)	46, 107, 202, 220, 618, 805, 853
MseI	TTAA	6 cut(s)	303, 329, 357, 725, 941, 1125
MspA1I	CMGCKG	1 cut(s)	1165
MspR9I	CCNGG	1 cut(s)	1008
Mva1269I	GAATGC	1 cut(s)	998
MvaI	CCWGG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	5 cut(s)	527, 629, 656, 827, 1060
NdeII	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
NlaIV	GGNNCC	2 cut(s)	213, 1032
NmuCI	GTSAC	2 cut(s)	163, 260
PctI	GAATGC	1 cut(s)	998
PfeI	GAWTC	5 cut(s)	378, 493, 743, 791, 978
PflFI	GACNNNGTC	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	529, 829, 832, 1065, 1167
PleI	GAGTC	2 cut(s)	682, 847
PpsI	GAGTC	2 cut(s)	682, 847
PpuMI	RGGWCCY	1 cut(s)	1030
Psp5II	RGGWCCY	1 cut(s)	1030
Psp6I	CCWGG	1 cut(s)	1006
PspGI	CCWGG	1 cut(s)	1006
PspN4I	GGNNCC	2 cut(s)	213, 1032
PspPI	GGNCC	1 cut(s)	1030
PspPPI	RGGWCCY	1 cut(s)	1030
PstNI	CAGNNNCTG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	161
RsaI	GTAC	2 cut(s)	350, 947
RsaNI	GTAC	2 cut(s)	349, 946
SaqAI	TTAA	6 cut(s)	303, 329, 357, 725, 941, 1125
SatI	GCNGC	5 cut(s)	528, 828, 831, 1064, 1166
Sau3AI	GATC	7 cut(s)	211, 274, 400, 759, 801, 810, 930
Sau96I	GGNCC	1 cut(s)	1030
ScaI	AGTACT	1 cut(s)	947
SchI	GAGTC	2 cut(s)	682, 848
ScrFI	CCNGG	1 cut(s)	1008
SfaNI	GCATC	3 cut(s)	604, 924, 1081
SfcI	CTRYAG	1 cut(s)	993
SinI	GGWCC	1 cut(s)	1030
SmlI	CTYRAG	2 cut(s)	702, 1178
SmoI	CTYRAG	2 cut(s)	702, 1178
Sse9I	AATT	4 cut(s)	7, 47, 70, 358
SsiI	CCGC	4 cut(s)	62, 188, 565, 1165
SspMI	CTAG	3 cut(s)	636, 692, 989
StyD4I	CCNGG	1 cut(s)	1006
StyI	CCWWGG	1 cut(s)	774
TaaI	ACNGT	5 cut(s)	54, 163, 353, 818, 850
TaiI	ACGT	2 cut(s)	320, 674
TaqI	TCGA	1 cut(s)	1191
TaqII	GACCGA	1 cut(s)	624
TasI	AATT	4 cut(s)	7, 47, 70, 358
TatI	WGTACW	2 cut(s)	348, 945
TauI	GCSGC	1 cut(s)	1168
TfiI	GAWTC	5 cut(s)	378, 493, 743, 791, 978
Tru1I	TTAA	6 cut(s)	303, 329, 357, 725, 941, 1125
Tru9I	TTAA	6 cut(s)	303, 329, 357, 725, 941, 1125
TscAI	CASTG	3 cut(s)	166, 358, 823
TseFI	GTSAC	2 cut(s)	163, 260
TseI	GCWGC	4 cut(s)	527, 827, 830, 1063
Tsp45I	GTSAC	2 cut(s)	163, 260
TspDTI	ATGAA	4 cut(s)	94, 351, 1162, 1245
TspGWI	ACGGA	1 cut(s)	727
TspRI	CASTG	3 cut(s)	166, 358, 823
Tth111I	GACNNNGTC	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	1030
XagI	CCTNNNNNAGG	1 cut(s)	485
XapI	RAATTY	2 cut(s)	7, 70
XbaI	TCTAGA	1 cut(s)	691
XspI	CTAG	3 cut(s)	636, 692, 989
ZrmI	AGTACT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.