Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013303

Physical Location & Seq

Genomic Coordinates Reverse (-)

11256494 .. 11260412

Gene Structure 3919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g18990.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGAACAATCTACTGGGACTAGACCTCTCCACCTCCACAACCCACCACTCCATCTTCCTCAACACTTCAACCTCATTTGACTTCTTCCCAACTTTCAATGAAATCATTTCCCCAACTACCCTTATCCCTCTCATATCCTCTGCCTCTCTCACTTCCAACCACAAAAGAAACACAAGACCAACTCAATGCTTCAAAACCCATGCTGCCCACTCAAGCCCCACTATCAGTGCTCATGTTGAAGTGGAGGAGCAAATGGAGGTTGAAGTTGCTGAGGGGTACACCGTCACTCAATTTTGTGATAAGATAATTGATGTTTTCTTGAATGAGAAGCCTAGGGTAAAAGAGTGGAGAAGATATCTGGTGTTTAGGGAGGAGTGGAAGAAATATAGAGATTGCTTTTATAATAGGTGTAGGAATCGGGCAGATGCCGAGAGTGATGCAACTGTGAAAGCAAAATTGGTTTCTATGGGGAGAAAGGTGAAGAAGATTGATGATGAAATGGAAAGACACAATGAACTTCTCAAGGAGATACAGGATAACCCAACTGACATCAATGCAATAGTTGCACGAAGGCGTACAGACTTCACAGATGAATTTTTTCGGCACCTCAACCTACTTTCAGAAGTTTATGATGGTTTGGAGGATCGTGATGCAATGGCTAGGCTTGGGGCTAGATGTTTGTCTGCTGTTAGTGCTTATGATAACACGCTTGAATATGTGGACACATTAGATACAGCCCAGGCGAAATTTGATGATATCCTAAATTCACCTTCAATCGATGTAGCATGTGAGAAAATTAAAAGCCTTGCCAAGGCAAAGGAACTGGATTCTTCATTGGTATTATTGATAAACAGTGCCTGGGCTTCAGCAAAGGAATCCACAACGATGAAAAATGAGGTTAAAGACATAATGTATCGTTTGTACAAAGCCACAAAAAGCAGTCTACGGAGTATTGTACCGAAAGAAATAAAGCTGCTCAAACATTTGCTGAACATAACAGATCCTGAAGAGCGATTCTCAGCACTGGCAACAGCTTTCTGCCCTGGTGATGATAATGAAGCCAAAGACCCCAAAGCTGTGTACAGAAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.61

Weight (kDa)

6.19

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37920
fragaria_vesca	FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990
malus_domestica	MD01G1044700.v1.1
prunus_persica	Prupe.6G209500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110011
rosa_laevigata	RLG00000017777
rosa_multiflora	Rmu_sc0001870.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133780
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216700 Rh2BG226700 Rh2CG218900 Rh2DG222300
rosa_wichuraiana	Rw2G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	402
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	943
AclWI	GGATC	2 cut(s)	651, 995
AcsI	RAATTY	3 cut(s)	593, 746, 763
AcuI	CTGAAG	2 cut(s)	849, 1026
AfaI	GTAC	5 cut(s)	278, 577, 923, 957, 1082
AfiI	CCNNNNNNNGG	1 cut(s)	811
AgsI	TTSAA	8 cut(s)	69, 97, 193, 239, 263, 322, 713, 774
AjnI	CCWGG	3 cut(s)	738, 857, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AluBI	AGCT	3 cut(s)	973, 1034, 1076
AluI	AGCT	3 cut(s)	973, 1034, 1076
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	651, 995
AlwNI	CAGNNNCTG	2 cut(s)	858, 1004
ApeKI	GCWGC	2 cut(s)	203, 973
ApoI	RAATTY	3 cut(s)	593, 746, 763
Asp700I	GAANNNNTTC	1 cut(s)	597
AspA2I	CCTAGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	490, 759, 1058
AvrII	CCTAGG	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	190, 960
BccI	CCATC	2 cut(s)	59, 626
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	3 cut(s)	740, 859, 1044
BfaI	CTAG	4 cut(s)	20, 333, 660, 672
BisI	GCNGC	2 cut(s)	204, 974
BlnI	CCTAGG	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	205, 975
Bme1390I	CCNGG	3 cut(s)	740, 859, 1044
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	3 cut(s)	740, 859, 1044
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	3 cut(s)	415, 427, 640
BmuI	ACTGGG	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	1001, 1033
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	196, 506
Bsa29I	ATCGAT	1 cut(s)	777
BsaJI	CCNNGG	5 cut(s)	332, 738, 810, 858, 1042
Bsc4I	CCNNNNNNNGG	1 cut(s)	811
Bse1I	ACTGG	3 cut(s)	18, 828, 1029
Bse3DI	GCAATG	1 cut(s)	660
BseBI	CCWGG	3 cut(s)	740, 859, 1044
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	5 cut(s)	332, 738, 810, 858, 1042
BseLI	CCNNNNNNNGG	1 cut(s)	811
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	261, 1032
BseNI	ACTGG	3 cut(s)	18, 828, 1029
BseRI	GAGGAG	2 cut(s)	260, 386
BseXI	GCAGC	2 cut(s)	190, 960
BshNI	GGYRCC	1 cut(s)	603
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	811
BsmFI	GGGAC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	2 cut(s)	921, 1080
Bsp143I	GATC	2 cut(s)	643, 1000
BspCNI	CTCAG	2 cut(s)	262, 1031
BspDI	ATCGAT	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	651, 995
BspQI	GCTCTTC	1 cut(s)	1002
BspT107I	GGYRCC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	660
BsrGI	TGTACA	2 cut(s)	921, 1080
BsrI	ACTGG	3 cut(s)	18, 828, 1029
BssECI	CCNNGG	5 cut(s)	332, 738, 810, 858, 1042
BssMI	GATC	2 cut(s)	643, 1000
BssT1I	CCWWGG	2 cut(s)	332, 810
Bst2UI	CCWGG	3 cut(s)	740, 859, 1044
Bst4CI	ACNGT	3 cut(s)	283, 445, 854
Bst6I	CTCTTC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	2 cut(s)	921, 1080
BstDEI	CTNAG	2 cut(s)	270, 1018
BstENI	CCTNNNNNAGG	1 cut(s)	809
BstKTI	GATC	2 cut(s)	646, 1003
BstMBI	GATC	2 cut(s)	643, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	563, 692
BstNI	CCWGG	3 cut(s)	740, 859, 1044
BstNSI	RCATGY	1 cut(s)	789
BstSCI	CCNGG	3 cut(s)	738, 857, 1042
BstV1I	GCAGC	2 cut(s)	190, 960
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
Bsu15I	ATCGAT	1 cut(s)	777
BsuTUI	ATCGAT	1 cut(s)	777
BtsIMutI	CAGTG	3 cut(s)	232, 859, 1022
CaiI	CAGNNNCTG	2 cut(s)	858, 1004
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	5 cut(s)	277, 576, 922, 956, 1081
CviAII	CATG	3 cut(s)	200, 233, 786
CviQI	GTAC	5 cut(s)	277, 576, 922, 956, 1081
DdeI	CTNAG	2 cut(s)	270, 1018
DpnI	GATC	2 cut(s)	645, 1002
DpnII	GATC	2 cut(s)	643, 1000
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Eco130I	CCWWGG	2 cut(s)	332, 810
Eco32I	GATATC	2 cut(s)	356, 757
Eco57I	CTGAAG	2 cut(s)	849, 1026
EcoNI	CCTNNNNNAGG	1 cut(s)	809
EcoRII	CCWGG	3 cut(s)	738, 857, 1042
EcoRV	GATATC	2 cut(s)	356, 757
EcoT14I	CCWWGG	2 cut(s)	332, 810
ErhI	CCWWGG	2 cut(s)	332, 810
FaeI	CATG	3 cut(s)	203, 236, 789
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	199, 232, 785
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	2 cut(s)	204, 974
Fsp4HI	GCNGC	2 cut(s)	204, 974
FspBI	CTAG	4 cut(s)	20, 333, 660, 672
GluI	GCNGC	2 cut(s)	204, 974
Hin1II	CATG	3 cut(s)	203, 236, 789
HinfI	GANTC	4 cut(s)	415, 827, 875, 1014
HphI	GGTGA	3 cut(s)	490, 759, 1058
Hpy166II	GTNNAC	4 cut(s)	279, 721, 944, 1081
Hpy188I	TCNGA	1 cut(s)	622
Hpy188III	TCNNGA	3 cut(s)	319, 647, 1004
Hpy8I	GTNNAC	4 cut(s)	279, 721, 944, 1081
HpyAV	CCTTC	2 cut(s)	564, 780
HpyCH4III	ACNGT	3 cut(s)	283, 445, 854
HpyCH4V	TGCA	4 cut(s)	440, 557, 566, 653
HpyF10VI	GCNNNNNNNGC	2 cut(s)	563, 692
HpyF3I	CTNAG	2 cut(s)	270, 1018
Hsp92II	CATG	3 cut(s)	203, 236, 789
Kzo9I	GATC	2 cut(s)	643, 1000
LguI	GCTCTTC	1 cut(s)	1002
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	190, 960
LweI	GCATC	3 cut(s)	415, 427, 640
MaeI	CTAG	4 cut(s)	20, 333, 660, 672
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	645, 1002
MboI	GATC	2 cut(s)	643, 1000
MboII	GAAGA	8 cut(s)	46, 76, 363, 391, 493, 496, 822, 1019
MflI	RGATCY	1 cut(s)	1000
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	7 cut(s)	290, 306, 455, 593, 746, 763, 795
MmeI	TCCRAC	1 cut(s)	180
MroXI	GAANNNNTTC	1 cut(s)	597
MseI	TTAA	2 cut(s)	798, 900
MslI	CAYNNNNRTG	1 cut(s)	884
MspR9I	CCNGG	3 cut(s)	740, 859, 1044
MvaI	CCWGG	3 cut(s)	740, 859, 1044
MwoI	GCNNNNNNNGC	2 cut(s)	563, 692
NdeII	GATC	2 cut(s)	643, 1000
NlaIII	CATG	3 cut(s)	203, 236, 789
NlaIV	GGNNCC	1 cut(s)	605
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	283
NspI	RCATGY	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	1002
PdmI	GAANNNNTTC	1 cut(s)	597
PfeI	GAWTC	4 cut(s)	415, 827, 875, 1014
PkrI	GCNGC	2 cut(s)	205, 975
PsiI	TTATAA	1 cut(s)	402
Psp6I	CCWGG	3 cut(s)	738, 857, 1042
PspGI	CCWGG	3 cut(s)	738, 857, 1042
PspN4I	GGNNCC	1 cut(s)	605
PstNI	CAGNNNCTG	2 cut(s)	858, 1004
PsuI	RGATCY	1 cut(s)	1000
RsaI	GTAC	5 cut(s)	278, 577, 923, 957, 1082
RsaNI	GTAC	5 cut(s)	277, 576, 922, 956, 1081
RseI	CAYNNNNRTG	1 cut(s)	884
SapI	GCTCTTC	1 cut(s)	1002
SaqAI	TTAA	2 cut(s)	798, 900
SatI	GCNGC	2 cut(s)	204, 974
Sau3AI	GATC	2 cut(s)	643, 1000
ScrFI	CCNGG	3 cut(s)	740, 859, 1044
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	3 cut(s)	415, 427, 640
SmiMI	CAYNNNNRTG	1 cut(s)	884
SmlI	CTYRAG	2 cut(s)	211, 521
SmoI	CTYRAG	2 cut(s)	211, 521
Sse9I	AATT	7 cut(s)	290, 306, 455, 593, 746, 763, 795
SspMI	CTAG	4 cut(s)	20, 333, 660, 672
StyD4I	CCNGG	3 cut(s)	738, 857, 1042
StyI	CCWWGG	2 cut(s)	332, 810
TaaI	ACNGT	3 cut(s)	283, 445, 854
TaqI	TCGA	1 cut(s)	777
TasI	AATT	7 cut(s)	290, 306, 455, 593, 746, 763, 795
TatI	WGTACW	2 cut(s)	921, 1080
TfiI	GAWTC	4 cut(s)	415, 827, 875, 1014
Tru1I	TTAA	2 cut(s)	798, 900
Tru9I	TTAA	2 cut(s)	798, 900
TscAI	CASTG	3 cut(s)	232, 859, 1029
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	203, 973
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	8 cut(s)	17, 114, 510, 528, 606, 822, 902, 1071
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	3 cut(s)	232, 859, 1029
XagI	CCTNNNNNAGG	1 cut(s)	809
XapI	RAATTY	3 cut(s)	593, 746, 763
XceI	RCATGY	1 cut(s)	789
XmaJI	CCTAGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	4 cut(s)	20, 333, 660, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.