Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0013303

Physical Location & Seq

Genomic Coordinates Forward (+)

14424970 .. 14427610

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1044700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGAAGGAAAAGTTTACTTCTTTGGGAAGAAAGGTGAAGAAGATTGATGATGAAATGGAAAGGCACAATGAACTTCTCAATGAGATACAAGACAATCCAACTGACGTTAATGCAATAGTTGCACGGAGGCGTAAAGACTTCACAGAGGAATTCTTTCGCCACCTTAACCTACTTTCGGAAATTTATGATAGTTTGGAGGATCGTGATGCGATGGCCCGGCTGGGGGCTAGGTGTTTGTCTGCTGTCAGTGCTTATGATAACACACTGGAATATGTGGAGACATTAGATACTGCTCAGGCCAAATTTGATGAAATCCTAAATTCTCCTTCCATGGATGTAGCATGTGAGAAGATTAAAAGCCTTGCCAAGGCTAAGGCGCTTGATTCTTCATTAGTATTGTTGATAAACAGTGCTTGGGCTTCAGCAAAGGAGTCCACAACTATGAAAAACGAGGTCAAAGACGTAATGTATCATTTGTACAAAGCCACAAAAAGCAGTCTTCGGAGCATTGCACCAAAAGAAATAAAACTACTCAAGCATTTGCTGAACATCACGGATCCCGAAGAGCGATTCTCGGCATTGGCAACAGCTTTCTCCCCTGGAGATGGACCTGAAGCCAAGGACCCCAAAGCTGTATATACTACTCCGAAAGAGCTTCACAGGTGGATTAAGATCATGCTTGATGCGTACCATCTAAATGCGGAAGAAACCGACATTAGAGAAGCCAAGCAGATGACTCAGCCTGTGGTTATACAAAGGCTGTTCATCCTCAAGGAAACTATCGAACAGGAATATTTGGAACGAAGCACAGAGCAGGAGTCTCAAGCAGAGGGTGCTAAACCAGAGGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009941 GO:0016020 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.47

Weight (kDa)

5.29

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37920
fragaria_vesca	FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990 FvH4_1g18990
malus_domestica	MD01G1044700.v1.1
prunus_persica	Prupe.6G209500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0110011
rosa_laevigata	RLG00000017777
rosa_multiflora	Rmu_sc0001870.1_g000006
rosa_roxburghii	Rroxscaffold_2G00133780
rosa_rugosa	Rorug02G0165100
rosa_samantha	Rh2AG216700 Rh2BG226700 Rh2CG218900 Rh2DG222300
rosa_wichuraiana	Rw2G016750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	701
AclWI	GGATC	3 cut(s)	207, 551, 564
AcsI	RAATTY	4 cut(s)	149, 180, 302, 319
AcuI	CTGAAG	2 cut(s)	405, 633
AfaI	GTAC	2 cut(s)	479, 689
AfiI	CCNNNNNNNGG	5 cut(s)	175, 222, 223, 367, 605
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	590, 632, 655
AluI	AGCT	3 cut(s)	590, 632, 655
Alw26I	GTCTC	2 cut(s)	272, 825
AlwI	GGATC	3 cut(s)	207, 551, 564
AoxI	GGCC	2 cut(s)	213, 297
ApoI	RAATTY	4 cut(s)	149, 180, 302, 319
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	3 cut(s)	214, 608, 622
AsuC2I	CCSGG	1 cut(s)	217
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	608, 622
BamHI	GGATCC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	491
BccI	CCATC	3 cut(s)	205, 599, 699
BciT130I	CCWGG	1 cut(s)	600
BcnI	CCSGG	1 cut(s)	217
BcoDI	GTCTC	2 cut(s)	272, 825
BfaI	CTAG	2 cut(s)	228, 853
BfoI	RGCGCY	1 cut(s)	380
Bme1390I	CCNGG	2 cut(s)	217, 600
Bme18I	GGWCC	2 cut(s)	608, 622
BmgT120I	GGNCC	3 cut(s)	214, 608, 622
BmiI	GGNNCC	2 cut(s)	558, 624
BmrFI	CCNGG	2 cut(s)	217, 600
BmsI	GCATC	2 cut(s)	196, 673
BpiI	GAAGAC	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	1 cut(s)	621
Bpu10I	CCTNAGC	2 cut(s)	294, 372
BpuEI	CTTGAG	3 cut(s)	518, 755, 807
BpuMI	CCSGG	1 cut(s)	217
BsaBI	GATNNNNATC	1 cut(s)	671
BsaJI	CCNNGG	4 cut(s)	330, 366, 598, 618
Bsc4I	CCNNNNNNNGG	5 cut(s)	175, 222, 223, 367, 605
Bse1I	ACTGG	1 cut(s)	270
Bse3DI	GCAATG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	4 cut(s)	330, 366, 598, 618
BseGI	GGATG	2 cut(s)	340, 765
BseJI	GATNNNNATC	1 cut(s)	671
BseLI	CCNNNNNNNGG	5 cut(s)	175, 222, 223, 367, 605
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	2 cut(s)	308, 752
BseNI	ACTGG	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	215, 299
BsiSI	CCGG	1 cut(s)	217
BslI	CCNNNNNNNGG	5 cut(s)	175, 222, 223, 367, 605
BsmAI	GTCTC	2 cut(s)	272, 825
BsnI	GGCC	2 cut(s)	215, 299
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	199, 556, 672
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	701
BspANI	GGCC	2 cut(s)	215, 299
BspCNI	CTCAG	2 cut(s)	307, 751
BspLI	GGNNCC	2 cut(s)	558, 624
BspPI	GGATC	3 cut(s)	207, 551, 564
BspQI	GCTCTTC	1 cut(s)	558
BsrDI	GCAATG	1 cut(s)	507
BsrGI	TGTACA	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	4 cut(s)	330, 366, 598, 618
BssMI	GATC	3 cut(s)	199, 556, 672
BssT1I	CCWWGG	3 cut(s)	330, 366, 618
Bst2UI	CCWGG	1 cut(s)	600
Bst4CI	ACNGT	1 cut(s)	410
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	2 cut(s)	119, 833
BstAUI	TGTACA	1 cut(s)	477
BstDEI	CTNAG	3 cut(s)	294, 372, 738
BstDSI	CCRYGG	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	340, 765
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	202, 559, 675
BstMAI	GTCTC	2 cut(s)	272, 825
BstMBI	GATC	3 cut(s)	199, 556, 672
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 248, 833
BstNI	CCWGG	1 cut(s)	600
BstNSI	RCATGY	1 cut(s)	345
BstSCI	CCNGG	2 cut(s)	215, 598
BstV2I	GAAGAC	1 cut(s)	491
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuRI	GGCC	2 cut(s)	215, 299
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	2 cut(s)	340, 765
BtsIMutI	CAGTG	3 cut(s)	253, 263, 415
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	3 cut(s)	214, 608, 622
Csp6I	GTAC	2 cut(s)	478, 688
CviAII	CATG	3 cut(s)	331, 342, 676
CviQI	GTAC	2 cut(s)	478, 688
DdeI	CTNAG	3 cut(s)	294, 372, 738
DpnI	GATC	3 cut(s)	201, 558, 674
DpnII	GATC	3 cut(s)	199, 556, 672
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco130I	CCWWGG	3 cut(s)	330, 366, 618
Eco47I	GGWCC	2 cut(s)	608, 622
Eco57I	CTGAAG	2 cut(s)	405, 633
EcoNI	CCTNNNNNAGG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	598
EcoT14I	CCWWGG	3 cut(s)	330, 366, 618
ErhI	CCWWGG	3 cut(s)	330, 366, 618
FaeI	CATG	3 cut(s)	334, 345, 679
FatI	CATG	3 cut(s)	330, 341, 675
FokI	GGATG	2 cut(s)	347, 752
FspBI	CTAG	2 cut(s)	228, 853
GlaI	GCGC	1 cut(s)	378
GsaI	CCCAGC	1 cut(s)	224
GsuI	CTGGAG	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	215, 299
HapII	CCGG	1 cut(s)	217
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	3 cut(s)	334, 345, 679
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	5 cut(s)	383, 431, 570, 736, 818
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	15, 435
Hpy188I	TCNGA	3 cut(s)	178, 504, 648
Hpy188III	TCNNGA	2 cut(s)	203, 560
Hpy8I	GTNNAC	2 cut(s)	15, 435
HpyAV	CCTTC	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	2 cut(s)	105, 462
HpyCH4V	TGCA	3 cut(s)	113, 122, 512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 248, 833
HpyF3I	CTNAG	3 cut(s)	294, 372, 738
HpySE526I	ACGT	2 cut(s)	105, 462
Hsp92II	CATG	3 cut(s)	334, 345, 679
HspAI	GCGC	1 cut(s)	377
Kzo9I	GATC	3 cut(s)	199, 556, 672
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	504
LweI	GCATC	2 cut(s)	196, 673
MaeI	CTAG	2 cut(s)	228, 853
MaeII	ACGT	2 cut(s)	105, 462
MalI	GATC	3 cut(s)	201, 558, 674
MboI	GATC	3 cut(s)	199, 556, 672
MboII	GAAGA	8 cut(s)	39, 49, 52, 361, 378, 491, 575, 716
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	4 cut(s)	149, 180, 302, 319
MlyI	GAGTC	3 cut(s)	440, 730, 827
MmeI	TCCRAC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	120, 139, 190, 445, 779, 823, 838
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	4 cut(s)	108, 165, 354, 669
MslI	CAYNNNNRTG	2 cut(s)	440, 696
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	2 cut(s)	217, 600
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	119, 248, 833
NciI	CCSGG	1 cut(s)	217
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	199, 556, 672
NlaIII	CATG	3 cut(s)	334, 345, 679
NlaIV	GGNNCC	2 cut(s)	558, 624
NmeAIII	GCCGAG	1 cut(s)	554
NspI	RCATGY	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	383, 570
PleI	GAGTC	3 cut(s)	439, 730, 826
PpsI	GAGTC	3 cut(s)	439, 730, 826
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	598
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	558, 624
PspPI	GGNCC	3 cut(s)	214, 608, 622
PspPPI	RGGWCCY	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	2 cut(s)	479, 689
RsaNI	GTAC	2 cut(s)	478, 688
RseI	CAYNNNNRTG	2 cut(s)	440, 696
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	4 cut(s)	108, 165, 354, 669
Sau3AI	GATC	3 cut(s)	199, 556, 672
Sau96I	GGNCC	3 cut(s)	214, 608, 622
SchI	GAGTC	3 cut(s)	440, 730, 827
ScrFI	CCNGG	2 cut(s)	217, 600
SfaNI	GCATC	2 cut(s)	196, 673
SinI	GGWCC	2 cut(s)	608, 622
SmiMI	CAYNNNNRTG	2 cut(s)	440, 696
SmlI	CTYRAG	3 cut(s)	533, 770, 822
SmoI	CTYRAG	3 cut(s)	533, 770, 822
Sse9I	AATT	4 cut(s)	149, 180, 302, 319
SsiI	CCGC	1 cut(s)	701
SspI	AATATT	1 cut(s)	794
SspMI	CTAG	2 cut(s)	228, 853
StyD4I	CCNGG	2 cut(s)	215, 598
StyI	CCWWGG	3 cut(s)	330, 366, 618
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	2 cut(s)	108, 465
TaqI	TCGA	1 cut(s)	783
TasI	AATT	4 cut(s)	149, 180, 302, 319
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	2 cut(s)	383, 570
Tru1I	TTAA	4 cut(s)	108, 165, 354, 669
Tru9I	TTAA	4 cut(s)	108, 165, 354, 669
TscAI	CASTG	3 cut(s)	253, 270, 415
TspDTI	ATGAA	7 cut(s)	17, 66, 84, 324, 378, 458, 754
TspGWI	ACGGA	2 cut(s)	139, 569
TspRI	CASTG	3 cut(s)	253, 270, 415
VpaK11BI	GGWCC	2 cut(s)	608, 622
XagI	CCTNNNNNAGG	1 cut(s)	365
XapI	RAATTY	4 cut(s)	149, 180, 302, 319
XceI	RCATGY	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	2 cut(s)	228, 853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.