Rh2CG295200

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019890
Physical Location & Seq
Reverse (-)
33869798 .. 33880821
11024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG295200.1

Sequence Viewer

Length: 675 bp
ATGAGGGAGCTTCAAAGTCTTCTTGCTATGGTTTCTCAGCCAGAACAAGCTGCTGAATTAAGTAGGGCACTTGGTATCATATATAAGGCACCTGGGACGAATGTGGTTTCTTCCATTGTCAAGATTGAGCGATCAGAATCTTCGCTGGCCAGAAATGAAGCAACTCTTTCTCCTCGAAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCTATTGTCAAGACTGAGGGACCCGAATATTTTGGGGCTAGATCTGCAGCAACTATATCTTCACCAAATAATGCTGAGGGACCAGAATCTTTGCTGGCTAGAAATGAAGCAACTCCTTCTCCTCCGAATAAATATTTACAGAATGAAAGGATTGTTTCTCTTCCTTCCATTGCCAAGACTGGGGGACCCAAATCTTTTGGGGCTAGATTTGCAGCAACTCTTTTTTCACCAAATAATGCTGAGGGACCAGAATCTTCACTCACTAGAATTGCAGCAACTCTTTCTTCACCGAATAATGCTTTACACTTTTACAGGAAAATCTGTTGGTCACTCTTAAATCATCATCAGACCCTGCAAAACTTGTGTTGGATTCGATGCAAGGGTCTCTTACGTATTACTGGAGAAATGGAGATGTTAGTTCCAAAGAAAAGGTTGTATCTGGTAACATTACTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

224

Amino Acids

24.67

Weight (kDa)

9.64

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019890)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124191
rosa_multiflora Rmu_sc0002968.1_g000032
rosa_roxburghii Rroxscaffold_3G00224230
rosa_rugosa Rorug07G0303100
rosa_samantha Rh2BG317300 Rh2CG295200 Rh7DG447100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AcoI YGGCCR 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 14
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 2 cut(s) 10, 50
AluI AGCT 2 cut(s) 10, 50
Alw26I GTCTC 1 cut(s) 605
AlwNI CAGNNNCTG 1 cut(s) 568
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 4 cut(s) 50, 263, 428, 488
AspS9I GGNCC 4 cut(s) 236, 296, 401, 461
AsuHPI GGTGA 3 cut(s) 270, 435, 495
AvaII GGWCC 4 cut(s) 236, 296, 401, 461
BaeGI GKGCMC 1 cut(s) 70
BalI TGGCCA 1 cut(s) 149
BanI GGYRCC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 11
BbvCI CCTCAGC 2 cut(s) 291, 456
BbvI GCAGC 4 cut(s) 37, 275, 440, 500
BciT130I CCWGG 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 605
BfaI CTAG 4 cut(s) 255, 315, 420, 480
BfmI CTRYAG 1 cut(s) 261
BglII AGATCT 1 cut(s) 257
BisI GCNGC 4 cut(s) 51, 264, 429, 489
BlsI GCNGC 4 cut(s) 52, 265, 430, 490
Bme1390I CCNGG 1 cut(s) 93
Bme18I GGWCC 4 cut(s) 236, 296, 401, 461
BmgT120I GGNCC 4 cut(s) 236, 296, 401, 461
BmiI GGNNCC 7 cut(s) 90, 237, 238, 297, 402, 403, 462
BmrFI CCNGG 1 cut(s) 93
BmrI ACTGGG 1 cut(s) 405
BmsI GCATC 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 405
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 636
Bpu10I CCTNAGC 2 cut(s) 291, 456
BsaAI YACGTR 1 cut(s) 608
BsaBI GATNNNNATC 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 92
BsaXI ACNNNNNCTCC 4 cut(s) 154, 184, 319, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 2 cut(s) 400, 619
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 136
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 92
BseJI GATNNNNATC 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 4 cut(s) 50, 222, 282, 447
BseNI ACTGG 2 cut(s) 400, 619
BseRI GAGGAG 2 cut(s) 162, 327
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 4 cut(s) 37, 275, 440, 500
BshFI GGCC 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 88
BslFI GGGAC 5 cut(s) 109, 249, 309, 414, 474
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 5 cut(s) 109, 249, 309, 414, 474
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 131, 257
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 4 cut(s) 49, 223, 283, 448
BspLI GGNNCC 7 cut(s) 90, 237, 238, 297, 402, 403, 462
BspMAI CTGCAG 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 605
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 2 cut(s) 400, 619
BssECI CCNNGG 1 cut(s) 92
BssMI GATC 2 cut(s) 131, 257
Bst2UI CCWGG 1 cut(s) 93
Bst6I CTCTTC 2 cut(s) 216, 381
BstBAI YACGTR 1 cut(s) 608
BstC8I GCNNGC 2 cut(s) 147, 312
BstDEI CTNAG 4 cut(s) 36, 231, 291, 456
BstKTI GATC 2 cut(s) 134, 260
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 2 cut(s) 131, 257
BstMWI GCNNNNNNNGC 2 cut(s) 260, 425
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 1 cut(s) 70
BstSNI TACGTA 1 cut(s) 608
BstV1I GCAGC 4 cut(s) 37, 275, 440, 500
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 257
BstYI RGATCY 1 cut(s) 257
BsuRI GGCC 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 147, 312
CaiI CAGNNNCTG 1 cut(s) 568
Cfr13I GGNCC 4 cut(s) 236, 296, 401, 461
CviJI RGCY 7 cut(s) 10, 40, 50, 149, 254, 314, 419
CviKI_1 RGCY 7 cut(s) 10, 40, 50, 149, 254, 314, 419
DdeI CTNAG 4 cut(s) 36, 231, 291, 456
DpnI GATC 2 cut(s) 133, 259
DpnII GATC 2 cut(s) 131, 257
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 2 cut(s) 216, 381
EarI CTCTTC 2 cut(s) 216, 381
Eco105I TACGTA 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 4 cut(s) 236, 296, 401, 461
EcoO109I RGGNCCY 2 cut(s) 236, 401
EcoRII CCWGG 1 cut(s) 91
FaiI YATR 5 cut(s) 29, 80, 82, 84, 272
FalI AAGNNNNNCTT 4 cut(s) 150, 182, 587, 619
FaqI GGGAC 5 cut(s) 109, 249, 309, 414, 474
Fnu4HI GCNGC 4 cut(s) 51, 264, 429, 489
Fsp4HI GCNGC 4 cut(s) 51, 264, 429, 489
FspBI CTAG 4 cut(s) 255, 315, 420, 480
GluI GCNGC 4 cut(s) 51, 264, 429, 489
GsuI CTGGAG 1 cut(s) 636
HaeIII GGCC 1 cut(s) 149
HinfI GANTC 4 cut(s) 137, 302, 467, 586
HphI GGTGA 3 cut(s) 270, 435, 495
Hpy188I TCNGA 3 cut(s) 136, 342, 564
Hpy188III TCNNGA 2 cut(s) 121, 226
HpyAV CCTTC 3 cut(s) 225, 342, 390
HpyCH4IV ACGT 1 cut(s) 607
HpyCH4V TGCA 5 cut(s) 263, 428, 488, 571, 594
HpyF10VI GCNNNNNNNGC 2 cut(s) 260, 425
HpyF3I CTNAG 4 cut(s) 36, 231, 291, 456
HpySE526I ACGT 1 cut(s) 607
KflI GGGWCCC 2 cut(s) 236, 401
Kzo9I GATC 2 cut(s) 131, 257
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 4 cut(s) 37, 275, 440, 500
LweI GCATC 1 cut(s) 581
MaeI CTAG 4 cut(s) 255, 315, 420, 480
MaeII ACGT 1 cut(s) 607
MaeIII GTNAC 2 cut(s) 543, 658
MalI GATC 2 cut(s) 133, 259
MboI GATC 2 cut(s) 131, 257
MboII GAAGA 8 cut(s) 11, 102, 132, 203, 267, 368, 462, 492
MflI RGATCY 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 70
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 2 cut(s) 56, 483
MluNI TGGCCA 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 563
MnlI CCTC 5 cut(s) 183, 226, 286, 348, 451
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 59, 551
Msp20I TGGCCA 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 260, 425
NdeII GATC 2 cut(s) 131, 257
NlaIV GGNNCC 7 cut(s) 90, 237, 238, 297, 402, 403, 462
NmuCI GTSAC 1 cut(s) 543
PfeI GAWTC 4 cut(s) 137, 302, 467, 586
PkrI GCNGC 4 cut(s) 52, 265, 430, 490
Ppu21I YACGTR 1 cut(s) 608
PpuMI RGGWCCY 2 cut(s) 236, 401
Psp5II RGGWCCY 2 cut(s) 236, 401
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 7 cut(s) 90, 237, 238, 297, 402, 403, 462
PspPI GGNCC 4 cut(s) 236, 296, 401, 461
PspPPI RGGWCCY 2 cut(s) 236, 401
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 257
SaqAI TTAA 2 cut(s) 59, 551
SatI GCNGC 4 cut(s) 51, 264, 429, 489
Sau3AI GATC 2 cut(s) 131, 257
Sau96I GGNCC 4 cut(s) 236, 296, 401, 461
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 70
SetI ASST 5 cut(s) 12, 52, 94, 610, 650
SfaNI GCATC 1 cut(s) 581
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 4 cut(s) 236, 296, 401, 461
SnaBI TACGTA 1 cut(s) 608
Sse9I AATT 2 cut(s) 56, 483
SspI AATATT 3 cut(s) 185, 245, 350
SspMI CTAG 4 cut(s) 255, 315, 420, 480
StyD4I CCNGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 610
TaqI TCGA 2 cut(s) 175, 589
TasI AATT 2 cut(s) 56, 483
TfiI GAWTC 4 cut(s) 137, 302, 467, 586
Tru1I TTAA 2 cut(s) 59, 551
Tru9I TTAA 2 cut(s) 59, 551
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 4 cut(s) 50, 263, 428, 488
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 4 cut(s) 171, 210, 336, 375
VpaK11BI GGWCC 4 cut(s) 236, 296, 401, 461
XspI CTAG 4 cut(s) 255, 315, 420, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.