Rh7DG447100

Frigida-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0019890
Physical Location & Seq
Reverse (-)
63452472 .. 63452801
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG447100.1

Sequence Viewer

Length: 330 bp
ATGTCACCACAGATTAGTCTTCAGGTGAGAGTAGAAGCAATGAAGTTAATTAGCCCTTGTTTGGAAAGCGAAGATGGGCCGGGACTGGCTATTCAGAACAGTTGGGAGGTTTTGGGATTCTTGCGCCTTATGGCTGCATATGGATTGACGGGAATTTGTGAGGCCGAGGAGCTTCAGAGTCTTCTTGCTACGGTGGAGCAGCCTAAACAAGCTAGTGAGTTGAGCAGGGCCGTTGGTATCACAGATAAGGCACCTGGTGAGCGCTTCTTTTTGGTCTTTCAGAGTCATTTTGCTGTAAATCTTTCTCATTTTATAGCATTGAAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

109

Amino Acids

11.92

Weight (kDa)

5.05

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Frigida PF07899 28 - 86 3.7e-08 Frigida-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019890)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0124191
rosa_multiflora Rmu_sc0002968.1_g000032
rosa_roxburghii Rroxscaffold_3G00224230
rosa_rugosa Rorug07G0303100
rosa_samantha Rh2BG317300 Rh2CG295200 Rh7DG447100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 2 cut(s) 5, 158
AdeI CACNNNGTG 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 61
AgsI TTSAA 1 cut(s) 322
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 2 cut(s) 172, 212
AluI AGCT 2 cut(s) 172, 212
Aor51HI AGCGCT 1 cut(s) 263
AoxI GGCC 3 cut(s) 77, 162, 228
ApeKI GCWGC 2 cut(s) 134, 199
ApoI RAATTY 1 cut(s) 153
AspLEI GCGC 2 cut(s) 126, 264
AspS9I GGNCC 2 cut(s) 77, 228
AsuC2I CCSGG 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 37, 269
BanI GGYRCC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 11, 173
BbvI GCAGC 2 cut(s) 121, 211
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 1 cut(s) 81
BfaI CTAG 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 265
BisI GCNGC 2 cut(s) 135, 200
BlsI GCNGC 2 cut(s) 136, 201
Bme1390I CCNGG 2 cut(s) 81, 255
BmgT120I GGNCC 2 cut(s) 77, 228
BmiI GGNNCC 1 cut(s) 252
BmrFI CCNGG 2 cut(s) 81, 255
BpiI GAAGAC 2 cut(s) 11, 173
BpuMI CCSGG 1 cut(s) 81
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 90
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 2 cut(s) 121, 211
BshFI GGCC 3 cut(s) 79, 164, 230
BshNI GGYRCC 1 cut(s) 250
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 3 cut(s) 79, 164, 230
BspANI GGCC 3 cut(s) 79, 164, 230
BspLI GGNNCC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 1 cut(s) 90
BssECI CCNNGG 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 2 cut(s) 101, 193
BstH2I RGCGCY 1 cut(s) 265
BstHHI GCGC 2 cut(s) 126, 264
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 79, 253
BstV1I GCAGC 2 cut(s) 121, 211
BstV2I GAAGAC 2 cut(s) 11, 173
BsuRI GGCC 3 cut(s) 79, 164, 230
CfoI GCGC 2 cut(s) 126, 264
Cfr13I GGNCC 2 cut(s) 77, 228
CsiI ACCWGGT 1 cut(s) 253
CviJI RGCY 9 cut(s) 54, 79, 89, 134, 164, 172, 202, 212, 230
CviKI_1 RGCY 9 cut(s) 54, 79, 89, 134, 164, 172, 202, 212, 230
DraIII CACNNNGTG 1 cut(s) 257
Eco47III AGCGCT 1 cut(s) 263
Eco57I CTGAAG 2 cut(s) 5, 158
EcoRII CCWGG 1 cut(s) 253
FaiI YATR 4 cut(s) 131, 139, 141, 314
FaqI GGGAC 1 cut(s) 96
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 135, 200
Fsp4HI GCNGC 2 cut(s) 135, 200
FspBI CTAG 1 cut(s) 213
GlaI GCGC 2 cut(s) 125, 263
GluI GCNGC 2 cut(s) 135, 200
HaeII RGCGCY 1 cut(s) 265
HaeIII GGCC 3 cut(s) 79, 164, 230
HapII CCGG 1 cut(s) 80
HhaI GCGC 2 cut(s) 126, 264
Hin6I GCGC 2 cut(s) 124, 262
HinP1I GCGC 2 cut(s) 124, 262
HinfI GANTC 3 cut(s) 117, 178, 283
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 37, 269
Hpy188I TCNGA 3 cut(s) 96, 177, 282
HpyCH4III ACNGT 2 cut(s) 101, 193
HpyCH4V TGCA 1 cut(s) 137
HspAI GCGC 2 cut(s) 124, 262
LmnI GCTCC 2 cut(s) 169, 196
LpnPI CCDG 6 cut(s) 8, 71, 93, 211, 240, 267
Lsp1109I GCAGC 2 cut(s) 121, 211
MabI ACCWGGT 1 cut(s) 253
MaeI CTAG 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 3 cut(s) 11, 83, 173
MluCI AATT 2 cut(s) 48, 153
MlyI GAGTC 2 cut(s) 187, 292
MnlI CCTC 3 cut(s) 100, 154, 160
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 322
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 2 cut(s) 81, 255
MvaI CCWGG 1 cut(s) 255
NciI CCSGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 252
NmeAIII GCCGAG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 136, 201
PleI GAGTC 2 cut(s) 186, 291
PpsI GAGTC 2 cut(s) 186, 291
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 252
PspPI GGNCC 2 cut(s) 77, 228
RseI CAYNNNNRTG 1 cut(s) 322
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 2 cut(s) 135, 200
Sau96I GGNCC 2 cut(s) 77, 228
SchI GAGTC 2 cut(s) 187, 292
ScrFI CCNGG 2 cut(s) 81, 255
SetI ASST 5 cut(s) 27, 111, 174, 214, 256
SexAI ACCWGGT 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 322
Sse9I AATT 2 cut(s) 48, 153
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 79, 253
TaaI ACNGT 2 cut(s) 101, 193
TasI AATT 2 cut(s) 48, 153
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 134, 199
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 56
XapI RAATTY 1 cut(s) 153
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.