Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0020869

Physical Location & Seq

Genomic Coordinates Reverse (-)

23091523 .. 23092055

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG224700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCCAAAAGGGCAACAGAGTCTTGTTACCTGGGCAACTCCAAGATTGAGTGAGGACAAAGTGAAGCAGTGTGTTGATCCTAAGCTAAACAACGACTACCCACCAAAGGCGATTGCTAAGTTGGCAGCAGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGGCCAAACATGACAATTGTTGTAAAGGCTCTACAGCCACTGCTCAATTCAAAACCTGCAGGACCAGACGCAAACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0036211 GO:0038023 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0044706 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0060089 GO:0060560 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

81

Amino Acids

8.76

Weight (kDa)

9.03

Isoelectric Point (pI)

22.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060
rosa_samantha	Rh3AG224700 Rh3CG252900 Rh4BG142300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	71
AcuI	CTGAAG	1 cut(s)	148
AdeI	CACNNNGTG	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	2 cut(s)	85, 158
AluI	AGCT	2 cut(s)	85, 158
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	125, 134
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	137, 146
BciT130I	CCWGG	1 cut(s)	31
BfmI	CTRYAG	2 cut(s)	197, 222
BfuAI	ACCTGC	1 cut(s)	229
BglI	GCCNNNNNGGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	126, 135
BlsI	GCNGC	2 cut(s)	127, 136
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseXI	GCAGC	2 cut(s)	137, 146
BshFI	GGCC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	106
BsnI	GGCC	1 cut(s)	169
Bsp143I	GATC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	76
Bst2UI	CCWGG	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	81, 117
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 122, 131, 134
BstNI	CCWGG	1 cut(s)	31
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	197, 222
BstV1I	GCAGC	2 cut(s)	137, 146
BsuRI	GGCC	1 cut(s)	169
BtsI	GCAGTG	3 cut(s)	74, 135, 203
BtsIMutI	CAGTG	3 cut(s)	74, 135, 203
BveI	ACCTGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	227
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	85, 158, 169, 194, 202
CviKI_1	RGCY	5 cut(s)	85, 158, 169, 194, 202
DdeI	CTNAG	2 cut(s)	81, 117
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DraIII	CACNNNGTG	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	29
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	153, 176, 244
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	126, 135
Fsp4HI	GCNGC	2 cut(s)	126, 135
GluI	GCNGC	2 cut(s)	126, 135
HaeIII	GGCC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	178
HinfI	GANTC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 122, 131, 134
HpyF3I	CTNAG	2 cut(s)	81, 117
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	5 cut(s)	16, 43, 151, 210, 234
Lsp1109I	GCAGC	2 cut(s)	137, 146
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	2 cut(s)	180, 211
MlyI	GAGTC	1 cut(s)	28
MnlI	CCTC	1 cut(s)	46
MspR9I	CCNGG	1 cut(s)	31
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	10, 122, 131, 134
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	127, 136
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	205
SatI	GCNGC	2 cut(s)	126, 135
Sau3AI	GATC	1 cut(s)	76
Sau96I	GGNCC	1 cut(s)	227
SbfI	CCTGCAGG	1 cut(s)	226
SchI	GAGTC	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	31
SdaI	CCTGCAGG	1 cut(s)	226
SetI	ASST	4 cut(s)	32, 87, 160, 223
SfcI	CTRYAG	2 cut(s)	197, 222
SgeI	CNNG	9 cut(s)	35, 42, 43, 54, 178, 187, 233, 237, 242
SinI	GGWCC	1 cut(s)	227
Sse8387I	CCTGCAGG	1 cut(s)	226
Sse9I	AATT	2 cut(s)	180, 211
StyD4I	CCNGG	1 cut(s)	29
TasI	AATT	2 cut(s)	180, 211
TscAI	CASTG	3 cut(s)	74, 135, 210
TseI	GCWGC	2 cut(s)	125, 134
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	3 cut(s)	74, 135, 210
VpaK11BI	GGWCC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.