Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0020869

Physical Location & Seq

Genomic Coordinates Forward (+)

25252411 .. 25252862

Gene Structure 452 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG142300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGCCCCGTGGACAGCAGAGTCTTGTGACTTGGGCTACTCCAAGATTGAGTGAAGATAAGGTTAAACAATGTGTAGATCCTAAGCTGAAGGGAGAATATCCTCCGAAAGGAGTCGCAAAGCTAGCAGCTGTGGCAGCTTTGTGTGTACAATATGAAGCTGAGTTCCGGCCAAATATGAGCATTGTTGTTAAGGCGCTACAACCGCTTCTAAAGCCACCTGCACCAGCTCCAGAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

79

Amino Acids

8.58

Weight (kDa)

9.3

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020869)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060
rosa_samantha	Rh3AG224700 Rh3CG252900 Rh4BG142300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	226
AasI	GACNNNNNNGTC	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	1 cut(s)	203
AclWI	GGATC	1 cut(s)	71
AcoI	YGGCCR	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	107
AluBI	AGCT	6 cut(s)	85, 121, 128, 137, 158, 227
AluI	AGCT	6 cut(s)	85, 121, 128, 137, 158, 227
AlwI	GGATC	1 cut(s)	71
AoxI	GGCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	125, 134
AspLEI	GCGC	1 cut(s)	196
AsuNHI	GCTAGC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	137, 146
BfaI	CTAG	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	226
BisI	GCNGC	2 cut(s)	126, 135
BlsI	GCNGC	2 cut(s)	127, 136
BmtI	GCTAGC	1 cut(s)	125
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	7
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	137, 146
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	76
BspACI	CCGC	1 cut(s)	203
BspANI	GGCC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	151
BspMI	ACCTGC	1 cut(s)	226
BspOI	GCTAGC	1 cut(s)	125
BspPI	GGATC	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	7
BssMI	GATC	1 cut(s)	76
BstAUI	TGTACA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	2 cut(s)	81, 159
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 131, 134, 202, 211
BstV1I	GCAGC	2 cut(s)	137, 146
BstX2I	RGATCY	1 cut(s)	76
BstYI	RGATCY	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	123
CfoI	GCGC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	146
CviJI	RGCY	9 cut(s)	35, 85, 121, 128, 137, 158, 169, 214, 227
CviKI_1	RGCY	9 cut(s)	35, 85, 121, 128, 137, 158, 169, 214, 227
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	2 cut(s)	81, 159
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	18
DseDI	GACNNNNNNGTC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	107
EcoNI	CCTNNNNNAGG	1 cut(s)	105
FaiI	YATR	2 cut(s)	153, 176
Fnu4HI	GCNGC	2 cut(s)	126, 135
Fsp4HI	GCNGC	2 cut(s)	126, 135
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	2 cut(s)	126, 135
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	169
HapII	CCGG	1 cut(s)	166
HhaI	GCGC	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	19, 111, 233
HpaII	CCGG	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	11, 146
Hpy188I	TCNGA	1 cut(s)	105
Hpy188III	TCNNGA	2 cut(s)	230, 237
Hpy8I	GTNNAC	2 cut(s)	11, 146
HpyAV	CCTTC	1 cut(s)	82
HpyCH4V	TGCA	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 131, 134, 202, 211
HpyF3I	CTNAG	2 cut(s)	81, 159
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	2 cut(s)	179, 231
Lsp1109I	GCAGC	2 cut(s)	137, 146
MaeI	CTAG	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	28, 120
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	2 cut(s)	63, 189
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	166
MwoI	GCNNNNNNNGC	5 cut(s)	122, 131, 134, 202, 211
NdeII	GATC	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	226
PkrI	GCNGC	2 cut(s)	127, 136
PleI	GAGTC	2 cut(s)	27, 119
PpsI	GAGTC	2 cut(s)	27, 119
PsuI	RGATCY	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	128
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	63, 189
SatI	GCNGC	2 cut(s)	126, 135
Sau3AI	GATC	1 cut(s)	76
SchI	GAGTC	2 cut(s)	28, 120
SetI	ASST	8 cut(s)	63, 87, 123, 130, 139, 160, 220, 229
SgeI	CNNG	9 cut(s)	18, 20, 35, 42, 54, 134, 178, 230, 236
SsiI	CCGC	1 cut(s)	203
SspMI	CTAG	1 cut(s)	122
TatI	WGTACW	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	63, 189
Tru9I	TTAA	2 cut(s)	63, 189
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	2 cut(s)	125, 134
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	1 cut(s)	168
XagI	CCTNNNNNAGG	1 cut(s)	105
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.