Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

19332825 .. 19335163

Gene Structure 2339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAGTTGCTTTGGGTGTTGTGGGGAGGATGATGATATGCATAAAACTGCTGATTATGGAGGTCGTCATAACCAAGCCAAACACTTTCCTCCAGGAAATGATGCAAGGCACCACCAAGCCTCTGAAACTGCACAGAAGGGTCCTCCAGTTGTGAAGTTGCAGCCTATTGAAGTACCTATTATCCCTTTTAGTGAACTCAAAGAAGCAACTGATGATTTTGGATCGAATTCTCTCATCGGTGAAGGCTCTTATGGAAGAGTATACTACGGGGTATTAAACAATGATCTGCCTTCAGCGATTAAAAAGTTGGATTCTAACAAACAGCCTGACAATGAATTCCTTGCTCAGGTTTCCATGGTTTCTAGGCTTAAACATGATAACTTTGTTCAACTTCTTGGCTACTGTGTTGATGGGAATTCACGGATACTTTCTTATGAATTTGCCAATAATGGATCTCTTCATGATATTCTTCATGGGAGAAAAGGTGTGAAAGGAGCACAGCCAGGTCCTGTCTTGTCGTGGTATCAACGAGTCAAAATTGCAGTTGGAGCTGCAAGAGGCCTTGAGTACTTGCATGAAAAAGCTAATCCTCACATCATTCACCGTGACATTAAATCCAGCAATGTCCTCCTCTTTGAAGATGATGTTGCCAAAATTGCTGACTTTGATCTCTCTAATCAAGCTCCTGATATGGCAGCTCGCCTTCATTCCACCCGAGTTCTTGGGACTTTTGGTTACCATGCCCCTGAATATGCAATGACCGGGCAGTTAAATGCCAAGAGTGATGTCTACAGCTTTGGAGTTGTCTTACTCGAACTTCTTACAGGTCGAAAGCCTGTTGATCATAGACTACCCAGAGGCCAGCAAAGTTTAGTCACATGGGCTACACCTAAACTGAGTGAAGACAAGGTTAAACAATGCGTTGATGCAAGACTCGGTGGCGATTACCCTCCAAAAGCTGTTGCTAAGTTAGCCGCGGTTGCTGCGTTGTGTGTGCAATATGAAGCAGATTTTAGGCCGAATATGAGTATCGTTGTCAAAGCTCTTCAACCTTTGTTGAATGCTCGAGCCGTAGCTCCAGGGGAAGGAGTACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

365

Amino Acids

39.93

Weight (kDa)

6.94

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	76 - 283	2.3e-39	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	77 - 349	1e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	108
AccI	GTMKAC	2 cut(s)	261, 789
AccII	CGCG	1 cut(s)	977
AciI	CCGC	2 cut(s)	975, 977
AclWI	GGATC	2 cut(s)	229, 460
AcsI	RAATTY	4 cut(s)	226, 335, 415, 437
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	174, 569, 1092
AfiI	CCNNNNNNNGG	2 cut(s)	346, 1085
AgsI	TTSAA	5 cut(s)	170, 389, 638, 1049, 1060
AjnI	CCWGG	3 cut(s)	91, 502, 1078
AluBI	AGCT	8 cut(s)	551, 584, 683, 698, 795, 959, 1043, 1076
AluI	AGCT	8 cut(s)	551, 584, 683, 698, 795, 959, 1043, 1076
Alw21I	GWGCWC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	229, 460
AlwNI	CAGNNNCTG	1 cut(s)	509
Ama87I	CYCGRG	2 cut(s)	714, 1065
AoxI	GGCC	3 cut(s)	559, 859, 1016
ApeKI	GCWGC	4 cut(s)	160, 551, 695, 983
ApoI	RAATTY	4 cut(s)	226, 335, 415, 437
AspS9I	GGNCC	2 cut(s)	140, 506
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	2 cut(s)	251, 593
AvaI	CYCGRG	2 cut(s)	714, 1065
AvaII	GGWCC	2 cut(s)	140, 506
BanI	GGYRCC	1 cut(s)	108
BbsI	GAAGAC	1 cut(s)	909
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	4 cut(s)	172, 538, 707, 970
BccI	CCATC	1 cut(s)	404
BceAI	ACGGC	1 cut(s)	1055
BciT130I	CCWGG	3 cut(s)	93, 504, 1080
BciVI	GTATCC	1 cut(s)	417
BclI	TGATCA	1 cut(s)	841
BcnI	CCSGG	1 cut(s)	763
BfaI	CTAG	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	790
BfuI	GTATCC	1 cut(s)	417
BisI	GCNGC	5 cut(s)	161, 552, 696, 975, 984
BlsI	GCNGC	5 cut(s)	162, 553, 697, 976, 985
BmcAI	AGTACT	1 cut(s)	569
Bme1390I	CCNGG	4 cut(s)	93, 504, 763, 1080
Bme18I	GGWCC	2 cut(s)	140, 506
BmeT110I	CYCGRG	2 cut(s)	714, 1065
BmgT120I	GGNCC	2 cut(s)	140, 506
BmiI	GGNNCC	2 cut(s)	110, 141
BmrFI	CCNGG	4 cut(s)	93, 504, 763, 1080
BmsI	GCATC	2 cut(s)	91, 916
BpiI	GAAGAC	1 cut(s)	909
BpmI	CTGGAG	3 cut(s)	75, 129, 1062
Bpu10I	CCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	763
BsaJI	CCNNGG	3 cut(s)	354, 975, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 1085
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	628, 762
BseBI	CCWGG	3 cut(s)	93, 504, 1080
BseDI	CCNNGG	3 cut(s)	354, 975, 1079
BseGI	GGATG	1 cut(s)	34
BseLI	CCNNNNNNNGG	2 cut(s)	346, 1085
BseMI	GCAATG	2 cut(s)	628, 762
BseMII	CTCAG	2 cut(s)	359, 887
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	4 cut(s)	172, 538, 707, 970
BsgI	GTGCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	977
BshFI	GGCC	3 cut(s)	561, 861, 1018
BshNI	GGYRCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	2 cut(s)	714, 1065
BsiSI	CCGG	1 cut(s)	762
BslFI	GGGAC	1 cut(s)	739
BslI	CCNNNNNNNGG	2 cut(s)	346, 1085
BsmFI	GGGAC	1 cut(s)	739
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	3 cut(s)	561, 861, 1018
BsoBI	CYCGRG	2 cut(s)	714, 1065
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	5 cut(s)	221, 283, 452, 667, 841
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	2 cut(s)	975, 977
BspANI	GGCC	3 cut(s)	561, 861, 1018
BspCNI	CTCAG	2 cut(s)	358, 888
BspFNI	CGCG	1 cut(s)	977
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	110, 141
BspPI	GGATC	2 cut(s)	229, 460
BspQI	GCTCTTC	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	108
BsrDI	GCAATG	2 cut(s)	628, 762
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	354, 975, 1079
BssMI	GATC	5 cut(s)	221, 283, 452, 667, 841
BssNAI	GTATAC	1 cut(s)	262
BssT1I	CCWWGG	1 cut(s)	354
Bst1107I	GTATAC	1 cut(s)	262
Bst2UI	CCWGG	3 cut(s)	93, 504, 1080
Bst4CI	ACNGT	2 cut(s)	404, 605
Bst6I	CTCTTC	3 cut(s)	250, 462, 1050
BstC8I	GCNNGC	2 cut(s)	700, 863
BstDEI	CTNAG	3 cut(s)	345, 896, 966
BstDSI	CCRYGG	2 cut(s)	354, 975
BstEII	GGTNACC	1 cut(s)	734
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	977
BstKTI	GATC	5 cut(s)	224, 286, 455, 670, 844
BstMBI	GATC	5 cut(s)	221, 283, 452, 667, 841
BstMWI	GCNNNNNNNGC	5 cut(s)	548, 656, 971, 980, 983
BstNI	CCWGG	3 cut(s)	93, 504, 1080
BstPI	GGTNACC	1 cut(s)	734
BstSCI	CCNGG	4 cut(s)	91, 502, 761, 1078
BstSFI	CTRYAG	1 cut(s)	790
BstUI	CGCG	1 cut(s)	977
BstV1I	GCAGC	4 cut(s)	172, 538, 707, 970
BstV2I	GAAGAC	1 cut(s)	909
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BstZ17I	GTATAC	1 cut(s)	262
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	561, 861, 1018
BtgI	CCRYGG	2 cut(s)	354, 975
BtsCI	GGATG	1 cut(s)	34
Cac8I	GCNNGC	2 cut(s)	700, 863
CaiI	CAGNNNCTG	1 cut(s)	509
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	140, 506
Cfr42I	CCGCGG	1 cut(s)	978
Csp6I	GTAC	3 cut(s)	173, 568, 1091
CviAII	CATG	7 cut(s)	355, 374, 461, 473, 575, 740, 879
CviQI	GTAC	3 cut(s)	173, 568, 1091
DdeI	CTNAG	3 cut(s)	345, 896, 966
DpnI	GATC	5 cut(s)	223, 285, 454, 669, 843
DpnII	GATC	5 cut(s)	221, 283, 452, 667, 841
Eam1104I	CTCTTC	3 cut(s)	250, 462, 1050
EarI	CTCTTC	3 cut(s)	250, 462, 1050
Eco130I	CCWWGG	1 cut(s)	354
Eco147I	AGGCCT	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	140, 506
Eco57I	CTGAAG	1 cut(s)	276
Eco88I	CYCGRG	2 cut(s)	714, 1065
Eco91I	GGTNACC	1 cut(s)	734
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	140, 506
EcoO65I	GGTNACC	1 cut(s)	734
EcoRI	GAATTC	3 cut(s)	226, 335, 415
EcoRII	CCWGG	3 cut(s)	91, 502, 1078
EcoT14I	CCWWGG	1 cut(s)	354
EcoT22I	ATGCAT	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	7 cut(s)	358, 377, 464, 476, 578, 743, 882
FaqI	GGGAC	1 cut(s)	739
FatI	CATG	7 cut(s)	354, 373, 460, 472, 574, 739, 878
FbaI	TGATCA	1 cut(s)	841
FblI	GTMKAC	2 cut(s)	261, 789
Fnu4HI	GCNGC	5 cut(s)	161, 552, 696, 975, 984
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	5 cut(s)	161, 552, 696, 975, 984
FspBI	CTAG	1 cut(s)	363
GluI	GCNGC	5 cut(s)	161, 552, 696, 975, 984
GsuI	CTGGAG	3 cut(s)	75, 129, 1062
HaeIII	GGCC	3 cut(s)	561, 861, 1018
HapII	CCGG	1 cut(s)	762
Hin1II	CATG	7 cut(s)	358, 377, 464, 476, 578, 743, 882
HinfI	GANTC	3 cut(s)	311, 531, 933
HpaII	CCGG	1 cut(s)	762
HphI	GGTGA	2 cut(s)	251, 593
Hpy166II	GTNNAC	3 cut(s)	194, 262, 790
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	461, 686
Hpy8I	GTNNAC	3 cut(s)	194, 262, 790
HpyAV	CCTTC	5 cut(s)	130, 236, 300, 713, 1079
HpyCH4III	ACNGT	2 cut(s)	404, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	548, 656, 971, 980, 983
HpyF3I	CTNAG	3 cut(s)	345, 896, 966
Hsp92II	CATG	7 cut(s)	358, 377, 464, 476, 578, 743, 882
Ksp22I	TGATCA	1 cut(s)	841
KspI	CCGCGG	1 cut(s)	978
Kzo9I	GATC	5 cut(s)	221, 283, 452, 667, 841
LguI	GCTCTTC	1 cut(s)	1050
LmnI	GCTCC	4 cut(s)	494, 548, 688, 1081
Lsp1109I	GCAGC	4 cut(s)	172, 538, 707, 970
LweI	GCATC	2 cut(s)	91, 916
MaeI	CTAG	1 cut(s)	363
MaeIII	GTNAC	3 cut(s)	605, 734, 874
MalI	GATC	5 cut(s)	223, 285, 454, 669, 843
MboI	GATC	5 cut(s)	221, 283, 452, 667, 841
MboII	GAAGA	6 cut(s)	267, 449, 461, 650, 914, 1037
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	6 cut(s)	226, 335, 415, 437, 537, 654
MlyI	GAGTC	2 cut(s)	540, 927
MmeI	TCCRAC	2 cut(s)	288, 526
Mph1103I	ATGCAT	1 cut(s)	42
MseI	TTAA	6 cut(s)	275, 300, 369, 612, 770, 912
MspA1I	CMGCKG	1 cut(s)	977
MspI	CCGG	1 cut(s)	762
MspR9I	CCNGG	4 cut(s)	93, 504, 763, 1080
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	3 cut(s)	93, 504, 1080
MvnI	CGCG	1 cut(s)	977
MwoI	GCNNNNNNNGC	5 cut(s)	548, 656, 971, 980, 983
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	5 cut(s)	221, 283, 452, 667, 841
NlaIII	CATG	7 cut(s)	358, 377, 464, 476, 578, 743, 882
NlaIV	GGNNCC	2 cut(s)	110, 141
NmuCI	GTSAC	2 cut(s)	605, 874
NsiI	ATGCAT	1 cut(s)	42
PaeR7I	CTCGAG	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	460
PceI	AGGCCT	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	1050
PctI	GAATGC	1 cut(s)	1066
PfeI	GAWTC	1 cut(s)	311
PfoI	TCCNGGA	1 cut(s)	91
PkrI	GCNGC	5 cut(s)	162, 553, 697, 976, 985
PleI	GAGTC	2 cut(s)	539, 927
PpsI	GAGTC	2 cut(s)	539, 927
PpuMI	RGGWCCY	2 cut(s)	140, 506
Psp5II	RGGWCCY	2 cut(s)	140, 506
Psp6I	CCWGG	3 cut(s)	91, 502, 1078
PspEI	GGTNACC	1 cut(s)	734
PspGI	CCWGG	3 cut(s)	91, 502, 1078
PspN4I	GGNNCC	2 cut(s)	110, 141
PspPI	GGNCC	2 cut(s)	140, 506
PspPPI	RGGWCCY	2 cut(s)	140, 506
PspXI	VCTCGAGB	1 cut(s)	1065
PstNI	CAGNNNCTG	1 cut(s)	509
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	3 cut(s)	174, 569, 1092
RsaNI	GTAC	3 cut(s)	173, 568, 1091
SacII	CCGCGG	1 cut(s)	978
SapI	GCTCTTC	1 cut(s)	1050
SaqAI	TTAA	6 cut(s)	275, 300, 369, 612, 770, 912
SatI	GCNGC	5 cut(s)	161, 552, 696, 975, 984
Sau3AI	GATC	5 cut(s)	221, 283, 452, 667, 841
Sau96I	GGNCC	2 cut(s)	140, 506
ScaI	AGTACT	1 cut(s)	569
SchI	GAGTC	2 cut(s)	540, 927
ScrFI	CCNGG	4 cut(s)	93, 504, 763, 1080
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	91, 916
SfcI	CTRYAG	1 cut(s)	790
Sfr274I	CTCGAG	1 cut(s)	1065
Sfr303I	CCGCGG	1 cut(s)	978
SgrBI	CCGCGG	1 cut(s)	978
SinI	GGWCC	2 cut(s)	140, 506
SlaI	CTCGAG	1 cut(s)	1065
SmlI	CTYRAG	2 cut(s)	563, 1065
SmoI	CTYRAG	2 cut(s)	563, 1065
Sse9I	AATT	6 cut(s)	226, 335, 415, 437, 537, 654
SseBI	AGGCCT	1 cut(s)	561
SsiI	CCGC	2 cut(s)	975, 977
SspMI	CTAG	1 cut(s)	363
StuI	AGGCCT	1 cut(s)	561
StyD4I	CCNGG	4 cut(s)	91, 502, 761, 1078
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	2 cut(s)	404, 605
TaqI	TCGA	4 cut(s)	224, 813, 829, 1066
TasI	AATT	6 cut(s)	226, 335, 415, 437, 537, 654
TatI	WGTACW	2 cut(s)	567, 1090
TauI	GCSGC	1 cut(s)	977
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	6 cut(s)	275, 300, 369, 612, 770, 912
Tru9I	TTAA	6 cut(s)	275, 300, 369, 612, 770, 912
TseFI	GTSAC	2 cut(s)	605, 874
TseI	GCWGC	4 cut(s)	160, 551, 695, 983
Tsp45I	GTSAC	2 cut(s)	605, 874
TspDTI	ATGAA	7 cut(s)	348, 449, 450, 461, 591, 695, 1017
TspGWI	ACGGA	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	140, 506
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	4 cut(s)	226, 335, 415, 437
XhoI	CTCGAG	1 cut(s)	1065
XmiI	GTMKAC	2 cut(s)	261, 789
XspI	CTAG	1 cut(s)	363
ZrmI	AGTACT	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.