Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001851.1

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

257821 .. 258259

Gene Structure 439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001851.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggacaatcttatggcaggggaagtgagctgcttcagctgttgtgatgaagatgatatgcataaagcaactgacaatggaggtgcttacatgatgaaaaatcctgcaagaaatgagggaagtcatcatgcctccggtaatgcacccaagggtggtcaaacggtaaaggtccagcctatcgaagttccacttataccagtagaggagctaaaggaaattacatataactttgggacaaatgccttgattggggaatggaagagtatattctggggtacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

93

Amino Acids

10.13

Weight (kDa)

4.81

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	19
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	2 cut(s)	152, 249
AluBI	AGCT	3 cut(s)	30, 39, 208
AluI	AGCT	3 cut(s)	30, 39, 208
ApeKI	GCWGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	169
BbvI	GCAGC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	31
BlsI	GCNGC	1 cut(s)	32
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 249
Bse1I	ACTGG	1 cut(s)	197
BseDI	CCNNGG	1 cut(s)	147
BseLI	CCNNNNNNNGG	2 cut(s)	152, 249
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	2 cut(s)	152, 249
BsmFI	GGGAC	1 cut(s)	247
BsrI	ACTGG	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	147
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	276
CviAII	CATG	2 cut(s)	91, 128
CviJI	RGCY	4 cut(s)	30, 39, 175, 208
CviKI_1	RGCY	4 cut(s)	30, 39, 175, 208
CviQI	GTAC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	19
EcoT14I	CCWWGG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	94, 131
FaiI	YATR	9 cut(s)	14, 59, 63, 92, 129, 194, 223, 225, 266
FalI	AAGNNNNNCTT	2 cut(s)	174, 206
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	2 cut(s)	90, 127
Fnu4HI	GCNGC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	31
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	2 cut(s)	94, 131
HpaII	CCGG	1 cut(s)	135
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	3 cut(s)	61, 107, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	94, 131
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	3, 117, 148, 185, 210, 256
Lsp1109I	GCAGC	1 cut(s)	17
MboII	GAAGA	2 cut(s)	62, 271
MluCI	AATT	1 cut(s)	216
MnlI	CCTC	4 cut(s)	74, 109, 142, 196
Mph1103I	ATGCAT	1 cut(s)	63
MseI	TTAA	1 cut(s)	280
MspA1I	CMGCKG	1 cut(s)	39
MspI	CCGG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	94, 131
NsiI	ATGCAT	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	39
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	280
SatI	GCNGC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	5 cut(s)	32, 41, 85, 171, 210
SinI	GGWCC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	180
TasI	AATT	1 cut(s)	216
Tru1I	TTAA	1 cut(s)	280
Tru9I	TTAA	1 cut(s)	280
TseI	GCWGC	1 cut(s)	30
TspDTI	ATGAA	2 cut(s)	63, 110
VpaK11BI	GGWCC	1 cut(s)	169
Zsp2I	ATGCAT	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.