Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Reverse (-)

32132112 .. 32135541

Gene Structure 3430 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG303800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCATAAAGCTACTGACAATGGAGGTGCTTACATGATGAAAAATCCTGCAGGAAATGAGGGGATTCATCATGATTCCGGTAGTGCGCCCAAAGGTGGTCAAGCCGTAAAGGCCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTGAAGGAAATTACAGATAACTTTGGGACAAGTGCCTTGATTGGGGAAGGTTCTTATGGAAGAGTATATTTTGGAGTACTTAAAAGCGGGGAGCAGGCAGCAATCAAGAAGCTCGATGCCAGCAAACAACCTGATGAGGAATATCTTGCGCAGGTTTCTATGGTATCACGGCTGAAAAATGATAATTTTGTTCAACTTCTTGGTTACTGCGTTGATGGGAGTTCTCGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACACGGAAGGAAAGGTGTCAAAGGAGCTCAACCTGGTCCTGTTCTAACTTGGGCACAGCGTGTTAAAATTGCAGTGGGTGCTGCAAGAGGACTCGAGTATCTACATGAAAAAGCAGTCCCCCATATCATTCATCGCGACATCAAGTCCAGCAATGTACTAATATTTGATGATGATGTCGCTAAGATTGCAGACTTTGATTTATCCAACCAAGCTCCTGATATGGCAGCACGTCTTCACTCCACTCGTGTTCTAGGAACCTTTGGTTATCATGCCCCAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

246

Amino Acids

26.55

Weight (kDa)

5.8

Isoelectric Point (pI)

30.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 246	4.7e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	74 - 246	6.7e-29	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	333
Acc36I	ACCTGC	1 cut(s)	325
AccII	CGCG	1 cut(s)	594
AciI	CCGC	2 cut(s)	164, 270
AclWI	GGATC	1 cut(s)	448
AcuI	CTGAAG	1 cut(s)	206
AdeI	CACNNNGTG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	261, 615
AfiI	CCNNNNNNNGG	2 cut(s)	128, 225
AgsI	TTSAA	2 cut(s)	158, 377
AhdI	GACNNNNNGTC	1 cut(s)	601
AjiI	CACGTC	1 cut(s)	689
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	6 cut(s)	6, 44, 184, 295, 485, 671
AluI	AGCT	6 cut(s)	6, 44, 184, 295, 485, 671
Alw21I	GWGCWC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	4 cut(s)	6, 281, 539, 683
AspLEI	GCGC	2 cut(s)	121, 334
AspS9I	GGNCC	2 cut(s)	145, 494
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	1 cut(s)	494
BaeGI	GKGCMC	1 cut(s)	514
BaeI	ACNNNNGTAYC	2 cut(s)	539, 572
BanII	GRGCYC	1 cut(s)	487
BauI	CACGAG	2 cut(s)	408, 702
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	487
BbvI	GCAGC	3 cut(s)	293, 526, 695
BccI	CCATC	1 cut(s)	392
BceAI	ACGGC	2 cut(s)	122, 368
BciT130I	CCWGG	1 cut(s)	492
BfaI	CTAG	1 cut(s)	710
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	325
BglI	GCCNNNNNGGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	7, 282, 540, 684
BlsI	GCNGC	4 cut(s)	8, 283, 541, 685
BmcAI	AGTACT	1 cut(s)	261
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	1 cut(s)	494
BmeRI	GACNNNNNGTC	1 cut(s)	601
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	689
BmgT120I	GGNCC	2 cut(s)	145, 494
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	289, 440
BpiI	GAAGAC	1 cut(s)	683
BsaWI	WCCGGW	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 225
Bse1I	ACTGG	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	128, 225
BseMI	GCAATG	1 cut(s)	616
BseNI	ACTGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	3 cut(s)	293, 526, 695
BseYI	CCCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	487
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	111
BslFI	GGGAC	2 cut(s)	223, 560
BslI	CCNNNNNNNGG	2 cut(s)	128, 225
BsmFI	GGGAC	2 cut(s)	223, 560
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	2 cut(s)	487, 514
Bsp143I	GATC	1 cut(s)	440
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	2 cut(s)	164, 270
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	2 cut(s)	103, 448
BspLI	GGNNCC	1 cut(s)	715
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	1 cut(s)	448
BsrDI	GCAATG	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	440
BssSI	CACGAG	2 cut(s)	408, 702
Bst2BI	CACGAG	2 cut(s)	408, 702
Bst2UI	CCWGG	1 cut(s)	492
Bst6I	CTCTTC	2 cut(s)	238, 450
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	279, 304
BstDEI	CTNAG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	594
BstHHI	GCGC	2 cut(s)	121, 334
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	4 cut(s)	12, 143, 536, 644
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	514
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	293, 526, 695
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	146
BtgZI	GCGATG	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	689
BtsI	GCAGTG	1 cut(s)	537
BtsIMutI	CAGTG	1 cut(s)	537
BtuMI	TCGCGA	1 cut(s)	594
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	279, 304
CciI	TCATGA	2 cut(s)	103, 448
CfoI	GCGC	2 cut(s)	121, 334
Cfr13I	GGNCC	2 cut(s)	145, 494
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	2 cut(s)	260, 614
CviAII	CATG	5 cut(s)	67, 104, 449, 563, 728
CviQI	GTAC	2 cut(s)	260, 614
DdeI	CTNAG	1 cut(s)	639
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
DraIII	CACNNNGTG	1 cut(s)	518
DriI	GACNNNNNGTC	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	238, 450
Eam1105I	GACNNNNNGTC	1 cut(s)	601
EarI	CTCTTC	2 cut(s)	238, 450
Ecl136II	GAGCTC	1 cut(s)	485
Eco24I	GRGCYC	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	551
EcoICRI	GAGCTC	1 cut(s)	485
EcoRII	CCWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	5 cut(s)	70, 107, 452, 566, 731
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	2 cut(s)	223, 560
FatI	CATG	5 cut(s)	66, 103, 448, 562, 727
FauI	CCCGC	1 cut(s)	263
Fnu4HI	GCNGC	4 cut(s)	7, 282, 540, 684
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	4 cut(s)	7, 282, 540, 684
FspBI	CTAG	1 cut(s)	710
FspI	TGCGCA	1 cut(s)	333
GlaI	GCGC	2 cut(s)	120, 333
GluI	GCNGC	4 cut(s)	7, 282, 540, 684
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	121, 334
Hin1II	CATG	5 cut(s)	70, 107, 452, 566, 731
Hin6I	GCGC	2 cut(s)	119, 332
HinP1I	GCGC	2 cut(s)	119, 332
HinfI	GANTC	3 cut(s)	97, 107, 549
HpaII	CCGG	1 cut(s)	111
Hpy188III	TCNNGA	5 cut(s)	104, 289, 449, 593, 674
HpyAV	CCTTC	3 cut(s)	181, 224, 459
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	37, 83, 431, 530, 542, 647
HpyF10VI	GCNNNNNNNGC	4 cut(s)	12, 143, 536, 644
HpyF3I	CTNAG	1 cut(s)	639
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	5 cut(s)	70, 107, 452, 566, 731
HspAI	GCGC	2 cut(s)	119, 332
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	4 cut(s)	181, 274, 482, 676
Lsp1109I	GCAGC	3 cut(s)	293, 526, 695
LweI	GCATC	2 cut(s)	289, 440
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	5 cut(s)	35, 38, 255, 437, 683
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	487, 514
MluCI	AATT	3 cut(s)	192, 367, 525
MlyI	GAGTC	1 cut(s)	543
MmeI	TCCRAC	1 cut(s)	687
MnlI	CCTC	5 cut(s)	50, 85, 172, 313, 539
Mph1103I	ATGCAT	1 cut(s)	39
MseI	TTAA	2 cut(s)	264, 522
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	4 cut(s)	12, 143, 536, 644
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	5 cut(s)	70, 107, 452, 566, 731
NlaIV	GGNNCC	1 cut(s)	715
NruI	TCGCGA	1 cut(s)	594
NsbI	TGCGCA	1 cut(s)	333
NsiI	ATGCAT	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	2 cut(s)	103, 448
PfeI	GAWTC	2 cut(s)	97, 107
PkrI	GCNGC	4 cut(s)	8, 283, 541, 685
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
Psp124BI	GAGCTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	715
PspPI	GGNCC	2 cut(s)	145, 494
PspXI	VCTCGAGB	1 cut(s)	551
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	2 cut(s)	261, 615
RsaNI	GTAC	2 cut(s)	260, 614
SacI	GAGCTC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	264, 522
SatI	GCNGC	4 cut(s)	7, 282, 540, 684
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	145, 494
SbfI	CCTGCAGG	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	261
SchI	GAGTC	1 cut(s)	543
ScrFI	CCNGG	1 cut(s)	492
SdaI	CCTGCAGG	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	487, 514
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	2 cut(s)	289, 440
SfcI	CTRYAG	1 cut(s)	81
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	1 cut(s)	494
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse8387I	CCTGCAGG	1 cut(s)	85
Sse9I	AATT	3 cut(s)	192, 367, 525
SsiI	CCGC	2 cut(s)	164, 270
SspI	AATATT	1 cut(s)	621
SspMI	CTAG	1 cut(s)	710
SstI	GAGCTC	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	490
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	2 cut(s)	297, 552
TasI	AATT	3 cut(s)	192, 367, 525
TatI	WGTACW	2 cut(s)	259, 613
TfiI	GAWTC	2 cut(s)	97, 107
Tru1I	TTAA	2 cut(s)	264, 522
Tru9I	TTAA	2 cut(s)	264, 522
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	4 cut(s)	6, 281, 539, 683
TspDTI	ATGAA	5 cut(s)	86, 89, 437, 578, 579
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	494
XhoI	CTCGAG	1 cut(s)	551
XspI	CTAG	1 cut(s)	710
ZrmI	AGTACT	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.