Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002056

Physical Location & Seq

Genomic Coordinates Forward (+)

34258756 .. 34270266

Gene Structure 11511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1283600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGCATAAAGCGAACGACCATGGAGGTCAATACACGGTGAAAAATCCGGCAGGAAATGAGGGAAGTCATCATGCTTCAGGAACGGCACCCAGAGGCGCTCAACCCGTAAGGGTCCAGCCTATCGAAGTTCCTACGATACCAATAGACGAACTAAAGGAGATTACGGAAGGCTTTGGGACCAGTGCTTTGATCGGAGAGGGTTCGTATGGAAGAGTATACTATGGGGTGCTTAAAAGTGGGCAGCATGCAGCAATCAAGAAGTTGGATGCCAGCAAACAACCTGATGAGGAATTTCTGGCGCAGGTTTCTATGGTGTCAAGGCTGAAACACGACCATTTTGTTCAACTACTTGGTTACTGCGTTGATGGGGTTTCACGTGTTCTTGCCTATGAGTTTGCATCTAATGGATCTCTTCATGATATTCTACACGGAAGGAAAGGTGTTAAAGGGGCACAGCCTGGTCCAGTTTTGTCGTGGGCGCAACGTGTGAAAATTGCCGTGGGTGCTGCAAAAGGGCTTGAGTATTTGCACGAAAAGGCTGATCCCCACATCATTCATCGCGACATCAAATCTAGCAATGTACTAATATTTGATGATGATGTTGCTAAGATTGCAGACTTTGATTTGTCCAATCAAGCTCCTGATAATGCAGCACGTCTCCACTCCACTCGTGTGCTAGGAACTTTTGGTTATCATGCCCCTGAATATGCAATGACTGGACAGTTGAATGCCAAGAGTGATGTTTACAGTTTTGGTGTTGTCCTGCTTGAGCTTTTGACTGGACGAAAACCTGTTGATCATACATTGCCACGGGGGCAGCAGAGTCTAGTAACATGGGCTACACCAAAGCTTAGTGAAGACAAAGTTAGGCAGTGCATTGATTCAAGACTAGGAGGAGAGTACCCACCAAAGGCGGTTGCAAAGATGGCTGCAGTTGCTGCCCTGTGCGTGCAATATGAGGCCGATTTCCGCCCAAACATGAGCATTGTTGTCAAAGCCCTCCAACCCCTGTTAAATGCTCGGCATGGACCCGCCGGTGAATCACCAAACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

352

Amino Acids

37.96

Weight (kDa)

7.8

Isoelectric Point (pI)

25.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	62 - 268	1.5e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	63 - 334	1.5e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47060 AT2G47060 AT2G47060 AT2G47060 AT3G62220 AT3G62220
fragaria_vesca	FvH4_1g26420 FvH4_1g26420
malus_domestica	MD09G1292500.v1.1 MD17G1283600.v1.1
prunus_persica	Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1 Prupe.3G003900_v2.0.a1
pyrus_communis	pycom09g19700
rosa_chinensis	RchiOBHm_Chr3g0486191 RchiOBHm_Chr5g0052601
rosa_laevigata	RLG00000023094 RLG00000034754
rosa_multiflora	Rmu_co8331037.1_g000001 Rmu_sc0001209.1_g000013 Rmu_sc0001851.1_g000047 Rmu_sc0003459.1_g000004 Rmu_sc0017021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008910 Rroxscaffold_6G00394750 Rroxscaffold_6G00396000
rosa_rugosa	Rorug02G0403900 Rorug02G0403900 Rorug02G0403900 Rorug03G0223900 Rorug03G0223900 Rorug03G0224000 Rorug06G0040100
rosa_samantha	Rh1AG084600 Rh1CG082400 Rh1DG088900 Rh3AG273900 Rh3AG282400 Rh3BG309200 Rh3DG303800 Rh3DG314200 Rh5BG354300 Rh5DG369900
rosa_wichuraiana	Rw3G024270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	292
AccB1I	GGYRCC	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	561
AciI	CCGC	3 cut(s)	914, 970, 1032
AclWI	GGATC	2 cut(s)	415, 536
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	60
AcvI	CACGTG	1 cut(s)	377
AfaI	GTAC	2 cut(s)	582, 902
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflIII	ACRYGT	2 cut(s)	376, 484
AgsI	TTSAA	3 cut(s)	344, 727, 885
AjiI	CACGTC	1 cut(s)	656
AjnI	CCWGG	1 cut(s)	457
AleI	CACNNNNGTG	1 cut(s)	671
AluBI	AGCT	3 cut(s)	638, 772, 850
AluI	AGCT	3 cut(s)	638, 772, 850
Alw26I	GTCTC	1 cut(s)	662
AlwI	GGATC	2 cut(s)	415, 536
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	1 cut(s)	960
ApeKI	GCWGC	7 cut(s)	241, 248, 506, 650, 817, 929, 938
ApoI	RAATTY	1 cut(s)	290
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AspLEI	GCGC	3 cut(s)	98, 301, 481
AspS9I	GGNCC	4 cut(s)	112, 177, 461, 1028
AsuHPI	GGTGA	3 cut(s)	49, 1035, 1049
AvaII	GGWCC	4 cut(s)	112, 177, 461, 1028
BaeGI	GKGCMC	1 cut(s)	454
BanI	GGYRCC	1 cut(s)	85
BauI	CACGAG	1 cut(s)	669
BbrPI	CACGTG	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	864
BbvI	GCAGC	7 cut(s)	253, 260, 493, 662, 829, 916, 925
BccI	CCATC	2 cut(s)	359, 919
BceAI	ACGGC	2 cut(s)	99, 482
BciT130I	CCWGG	1 cut(s)	459
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	1 cut(s)	662
BfaI	CTAG	4 cut(s)	573, 677, 827, 890
BfmI	CTRYAG	1 cut(s)	930
BfoI	RGCGCY	1 cut(s)	99
BfuAI	ACCTGC	1 cut(s)	292
BglI	GCCNNNNNGGC	1 cut(s)	814
BisI	GCNGC	7 cut(s)	242, 249, 507, 651, 818, 930, 939
BlsI	GCNGC	7 cut(s)	243, 250, 508, 652, 819, 931, 940
Bme1390I	CCNGG	1 cut(s)	459
Bme18I	GGWCC	4 cut(s)	112, 177, 461, 1028
BmgBI	CACGTC	1 cut(s)	656
BmgT120I	GGNCC	4 cut(s)	112, 177, 461, 1028
BmiI	GGNNCC	4 cut(s)	87, 113, 178, 1030
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	256, 407
BpiI	GAAGAC	1 cut(s)	864
BpuEI	CTTGAG	2 cut(s)	539, 788
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	19, 498, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse118I	RCCGGY	1 cut(s)	1034
Bse1I	ACTGG	4 cut(s)	180, 464, 721, 784
Bse3DI	GCAATG	3 cut(s)	583, 717, 803
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	3 cut(s)	19, 498, 809
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	3 cut(s)	583, 717, 803
BseNI	ACTGG	4 cut(s)	180, 464, 721, 784
BseRI	GAGGAG	1 cut(s)	909
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	7 cut(s)	253, 260, 493, 662, 829, 916, 925
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	1 cut(s)	962
BshNI	GGYRCC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	47, 1035
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	1 cut(s)	662
BsmBI	CGTCTC	1 cut(s)	662
BsmFI	GGGAC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	733
BsnI	GGCC	1 cut(s)	962
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp143I	GATC	4 cut(s)	189, 407, 541, 796
Bsp19I	CCATGG	1 cut(s)	19
Bsp68I	TCGCGA	1 cut(s)	561
BspACI	CCGC	3 cut(s)	914, 970, 1032
BspANI	GGCC	1 cut(s)	962
BspFNI	CGCG	1 cut(s)	561
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	4 cut(s)	87, 113, 178, 1030
BspMAI	CTGCAG	1 cut(s)	934
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	415, 536
BspT107I	GGYRCC	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	583, 717, 803
BsrFI	RCCGGY	1 cut(s)	1034
BsrI	ACTGG	4 cut(s)	180, 464, 721, 784
BssAI	RCCGGY	1 cut(s)	1034
BssECI	CCNNGG	3 cut(s)	19, 498, 809
BssMI	GATC	4 cut(s)	189, 407, 541, 796
BssNAI	GTATAC	1 cut(s)	217
BssSI	CACGAG	1 cut(s)	669
BssT1I	CCWWGG	1 cut(s)	19
Bst1107I	GTATAC	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	669
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	3 cut(s)	37, 723, 749
Bst6I	CTCTTC	2 cut(s)	205, 417
BstAPI	GCANNNNNTGC	1 cut(s)	938
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	3 cut(s)	246, 271, 950
BstDEI	CTNAG	2 cut(s)	606, 851
BstDSI	CCRYGG	3 cut(s)	19, 498, 809
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	3 cut(s)	98, 301, 481
BstKTI	GATC	4 cut(s)	192, 410, 544, 799
BstMAI	GTCTC	1 cut(s)	662
BstMBI	GATC	4 cut(s)	189, 407, 541, 796
BstMWI	GCNNNNNNNGC	6 cut(s)	503, 611, 814, 926, 935, 938
BstNI	CCWGG	1 cut(s)	459
BstNSI	RCATGY	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	7 cut(s)	253, 260, 493, 662, 829, 916, 925
BstV2I	GAAGAC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	407
BstYI	RGATCY	1 cut(s)	407
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	962
BtgI	CCRYGG	3 cut(s)	19, 498, 809
BtgZI	GCGATG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	656
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	2 cut(s)	187, 878
BtuMI	TCGCGA	1 cut(s)	561
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	246, 271, 950
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	415
CfoI	GCGC	3 cut(s)	98, 301, 481
Cfr10I	RCCGGY	1 cut(s)	1034
Cfr13I	GGNCC	4 cut(s)	112, 177, 461, 1028
Csp6I	GTAC	2 cut(s)	581, 901
CviAII	CATG	8 cut(s)	20, 71, 245, 416, 695, 834, 979, 1025
CviQI	GTAC	2 cut(s)	581, 901
DdeI	CTNAG	2 cut(s)	606, 851
DpnI	GATC	4 cut(s)	191, 409, 543, 798
DpnII	GATC	4 cut(s)	189, 407, 541, 796
Eam1104I	CTCTTC	2 cut(s)	205, 417
EarI	CTCTTC	2 cut(s)	205, 417
EciI	GGCGGA	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	19
Eco47I	GGWCC	4 cut(s)	112, 177, 461, 1028
Eco57I	CTGAAG	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	662
FaeI	CATG	8 cut(s)	23, 74, 248, 419, 698, 837, 982, 1028
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	8 cut(s)	19, 70, 244, 415, 694, 833, 978, 1024
FauI	CCCGC	1 cut(s)	1039
FbaI	TGATCA	1 cut(s)	796
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	7 cut(s)	242, 249, 507, 651, 818, 930, 939
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	7 cut(s)	242, 249, 507, 651, 818, 930, 939
FspBI	CTAG	4 cut(s)	573, 677, 827, 890
GlaI	GCGC	3 cut(s)	97, 300, 480
GluI	GCNGC	7 cut(s)	242, 249, 507, 651, 818, 930, 939
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	962
HapII	CCGG	2 cut(s)	47, 1035
HhaI	GCGC	3 cut(s)	98, 301, 481
Hin1II	CATG	8 cut(s)	23, 74, 248, 419, 698, 837, 982, 1028
Hin6I	GCGC	3 cut(s)	96, 299, 479
HinP1I	GCGC	3 cut(s)	96, 299, 479
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	3 cut(s)	823, 881, 1040
HpaII	CCGG	2 cut(s)	47, 1035
HphI	GGTGA	3 cut(s)	49, 1035, 1049
Hpy166II	GTNNAC	2 cut(s)	217, 745
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	6 cut(s)	78, 256, 416, 560, 641, 885
Hpy8I	GTNNAC	2 cut(s)	217, 745
HpyAV	CCTTC	2 cut(s)	161, 426
HpyCH4III	ACNGT	3 cut(s)	37, 723, 749
HpyCH4IV	ACGT	3 cut(s)	376, 484, 655
HpyF10VI	GCNNNNNNNGC	6 cut(s)	503, 611, 814, 926, 935, 938
HpyF3I	CTNAG	2 cut(s)	606, 851
HpySE526I	ACGT	3 cut(s)	376, 484, 655
Hsp92II	CATG	8 cut(s)	23, 74, 248, 419, 698, 837, 982, 1028
HspAI	GCGC	3 cut(s)	96, 299, 479
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	4 cut(s)	189, 407, 541, 796
LmnI	GCTCC	1 cut(s)	643
Lsp1109I	GCAGC	7 cut(s)	253, 260, 493, 662, 829, 916, 925
LweI	GCATC	2 cut(s)	256, 407
MaeI	CTAG	4 cut(s)	573, 677, 827, 890
MaeII	ACGT	3 cut(s)	376, 484, 655
MaeIII	GTNAC	2 cut(s)	353, 829
MalI	GATC	4 cut(s)	191, 409, 543, 798
MboI	GATC	4 cut(s)	189, 407, 541, 796
MboII	GAAGA	3 cut(s)	222, 404, 869
MflI	RGATCY	1 cut(s)	407
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	2 cut(s)	290, 492
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	2 cut(s)	243, 1027
MnlI	CCTC	8 cut(s)	17, 52, 86, 190, 280, 887, 952, 1010
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	231, 444, 1013
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	2 cut(s)	47, 1035
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	459
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	6 cut(s)	503, 611, 814, 926, 935, 938
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	4 cut(s)	189, 407, 541, 796
NlaIII	CATG	8 cut(s)	23, 74, 248, 419, 698, 837, 982, 1028
NlaIV	GGNNCC	4 cut(s)	87, 113, 178, 1030
NmeAIII	GCCGAG	1 cut(s)	1000
NruI	TCGCGA	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	248
OliI	CACNNNNGTG	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	248
PagI	TCATGA	1 cut(s)	415
PctI	GAATGC	1 cut(s)	733
PfeI	GAWTC	2 cut(s)	881, 1040
PkrI	GCNGC	7 cut(s)	243, 250, 508, 652, 819, 931, 940
PleI	GAGTC	1 cut(s)	831
PmaCI	CACGTG	1 cut(s)	377
PmlI	CACGTG	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	831
Ppu21I	YACGTR	1 cut(s)	377
Psp6I	CCWGG	1 cut(s)	457
PspCI	CACGTG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	457
PspN4I	GGNNCC	4 cut(s)	87, 113, 178, 1030
PspPI	GGNCC	4 cut(s)	112, 177, 461, 1028
PstI	CTGCAG	1 cut(s)	934
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	407
RruI	TCGCGA	1 cut(s)	561
RsaI	GTAC	2 cut(s)	582, 902
RsaNI	GTAC	2 cut(s)	581, 901
RseI	CAYNNNNRTG	1 cut(s)	671
SaqAI	TTAA	3 cut(s)	231, 444, 1013
SatI	GCNGC	7 cut(s)	242, 249, 507, 651, 818, 930, 939
Sau3AI	GATC	4 cut(s)	189, 407, 541, 796
Sau96I	GGNCC	4 cut(s)	112, 177, 461, 1028
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	256, 407
SfcI	CTRYAG	1 cut(s)	930
SgrAI	CRCCGGYG	1 cut(s)	1034
SinI	GGWCC	4 cut(s)	112, 177, 461, 1028
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	2 cut(s)	518, 767
SmoI	CTYRAG	2 cut(s)	518, 767
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	2 cut(s)	290, 492
SsiI	CCGC	3 cut(s)	914, 970, 1032
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	4 cut(s)	573, 677, 827, 890
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	37, 723, 749
TaiI	ACGT	3 cut(s)	379, 487, 658
TaqI	TCGA	1 cut(s)	123
TasI	AATT	2 cut(s)	290, 492
TatI	WGTACW	1 cut(s)	580
TfiI	GAWTC	2 cut(s)	881, 1040
Tru1I	TTAA	3 cut(s)	231, 444, 1013
Tru9I	TTAA	3 cut(s)	231, 444, 1013
TscAI	CASTG	2 cut(s)	187, 878
TseI	GCWGC	7 cut(s)	241, 248, 506, 650, 817, 929, 938
TspDTI	ATGAA	2 cut(s)	404, 545
TspGWI	ACGGA	2 cut(s)	179, 444
TspRI	CASTG	2 cut(s)	187, 878
VpaK11BI	GGWCC	4 cut(s)	112, 177, 461, 1028
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	1 cut(s)	248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	216
XspI	CTAG	4 cut(s)	573, 677, 827, 890
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.